[INFO] cloning repository https://github.com/omarbaldeh/sylph [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/omarbaldeh/sylph" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fomarbaldeh%2Fsylph", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fomarbaldeh%2Fsylph'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 9e0e48c389fe0998b0c1c3fa0321eb93b8b36394 [INFO] testing omarbaldeh/sylph against master#d933cf483edf1605142ac6899ff32536c0ad8b22 for pr-150933 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fomarbaldeh%2Fsylph" "/workspace/builds/worker-0-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc1/source'... [INFO] [stderr] done. [INFO] removed /workspace/builds/worker-0-tc1/source/.cargo/config.toml [INFO] started tweaking git repo https://github.com/omarbaldeh/sylph [INFO] finished tweaking git repo https://github.com/omarbaldeh/sylph [INFO] tweaked toml for git repo https://github.com/omarbaldeh/sylph written to /workspace/builds/worker-0-tc1/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/omarbaldeh/sylph on toolchain d933cf483edf1605142ac6899ff32536c0ad8b22 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d933cf483edf1605142ac6899ff32536c0ad8b22" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/omarbaldeh/sylph already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d933cf483edf1605142ac6899ff32536c0ad8b22" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded sdd v3.0.4 [INFO] [stderr] Downloaded scalable_cuckoo_filter v0.2.4 [INFO] [stderr] Downloaded predicates v2.1.5 [INFO] [stderr] Downloaded assert_cmd v1.0.8 [INFO] [stderr] Downloaded statrs v0.16.1 [INFO] [stderr] Downloaded needletail v0.5.1 [INFO] [stderr] Downloaded predicates v1.0.8 [INFO] [stderr] Downloaded wide v0.7.28 [INFO] [stderr] Downloaded simple_logger v3.0.0 [INFO] [stderr] Downloaded tikv-jemallocator v0.6.0 [INFO] [stderr] Downloaded predicates-tree v1.0.11 [INFO] [stderr] Downloaded memory-stats v1.2.0 [INFO] [stderr] Downloaded buffer-redux v1.0.2 [INFO] [stderr] Downloaded safe_arch v0.7.2 [INFO] [stderr] Downloaded tikv-jemalloc-sys v0.6.0+5.3.0-1-ge13ca993e8ccb9ba9847cc330696e02839f328f7 [INFO] [stderr] Downloaded scc v2.2.4 [INFO] [stderr] Downloaded float-cmp v0.8.0 [INFO] [stderr] Downloaded predicates-core v1.0.8 [INFO] [stderr] Downloaded libz-ng-sys v1.1.20 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+d933cf483edf1605142ac6899ff32536c0ad8b22" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 99a2667a4be9d080f51d77b027c15c30a9e56dc25386c56de0371f3ccef51ede [INFO] running `Command { std: "docker" "start" "-a" "99a2667a4be9d080f51d77b027c15c30a9e56dc25386c56de0371f3ccef51ede", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "99a2667a4be9d080f51d77b027c15c30a9e56dc25386c56de0371f3ccef51ede", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "99a2667a4be9d080f51d77b027c15c30a9e56dc25386c56de0371f3ccef51ede", kill_on_drop: false }` [INFO] [stdout] 99a2667a4be9d080f51d77b027c15c30a9e56dc25386c56de0371f3ccef51ede [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+d933cf483edf1605142ac6899ff32536c0ad8b22" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] e1dd4ff41decf409bee1087229a5c383bc28971887f3735ff77b48887ea37896 [INFO] running `Command { std: "docker" "start" "-a" "e1dd4ff41decf409bee1087229a5c383bc28971887f3735ff77b48887ea37896", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.89 [INFO] [stderr] Compiling unicode-ident v1.0.13 [INFO] [stderr] Compiling libc v0.2.161 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling byteorder v1.5.0 [INFO] [stderr] Compiling cc v1.1.36 [INFO] [stderr] Compiling libm v0.2.11 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling memchr v2.7.4 [INFO] [stderr] Compiling bytemuck v1.19.0 [INFO] [stderr] Compiling serde v1.0.214 [INFO] [stderr] Compiling matrixmultiply v0.3.9 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling crossbeam-utils v0.8.20 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Compiling typenum v1.17.0 [INFO] [stderr] Compiling indexmap v1.9.3 [INFO] [stderr] Compiling lazy_static v1.5.0 [INFO] [stderr] Compiling safe_arch v0.7.2 [INFO] [stderr] Compiling powerfmt v0.2.0 [INFO] [stderr] Compiling adler2 v2.0.0 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling time-core v0.1.2 [INFO] [stderr] Compiling itoa v1.0.11 [INFO] [stderr] Compiling num-conv v0.1.0 [INFO] [stderr] Compiling rayon-core v1.12.1 [INFO] [stderr] Compiling miniz_oxide v0.8.0 [INFO] [stderr] Compiling crc32fast v1.4.2 [INFO] [stderr] Compiling deranged v0.3.11 [INFO] [stderr] Compiling hashbrown v0.15.1 [INFO] [stderr] Compiling time-macros v0.2.18 [INFO] [stderr] Compiling equivalent v1.0.1 [INFO] [stderr] Compiling wide v0.7.28 [INFO] [stderr] Compiling num_threads v0.1.7 [INFO] [stderr] Compiling crossbeam-epoch v0.9.18 [INFO] [stderr] Compiling hashbrown v0.12.3 [INFO] [stderr] Compiling cmake v0.1.51 [INFO] [stderr] Compiling os_str_bytes v6.6.1 [INFO] [stderr] Compiling quote v1.0.37 [INFO] [stderr] Compiling getrandom v0.2.15 [INFO] [stderr] Compiling crossbeam-deque v0.8.5 [INFO] [stderr] Compiling aho-corasick v1.1.3 [INFO] [stderr] Compiling regex-syntax v0.8.5 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling syn v2.0.87 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling libz-ng-sys v1.1.20 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling time v0.3.36 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling xz2 v0.1.7 [INFO] [stderr] Compiling indexmap v2.6.0 [INFO] [stderr] Compiling clap_lex v0.2.4 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling buffer-redux v1.0.2 [INFO] [stderr] Compiling colored v2.1.0 [INFO] [stderr] Compiling simba v0.6.0 [INFO] [stderr] Compiling bytecount v0.6.8 [INFO] [stderr] Compiling termcolor v1.4.1 [INFO] [stderr] Compiling siphasher v1.0.1 [INFO] [stderr] Compiling strsim v0.10.0 [INFO] [stderr] Compiling unsafe-libyaml v0.2.11 [INFO] [stderr] Compiling once_cell v1.20.2 [INFO] [stderr] Compiling textwrap v0.16.1 [INFO] [stderr] Compiling log v0.4.22 [INFO] [stderr] Compiling bitflags v1.3.2 [INFO] [stderr] Compiling ryu v1.0.18 [INFO] [stderr] Compiling regex-automata v0.4.8 [INFO] [stderr] Compiling zerocopy-derive v0.7.35 [INFO] [stderr] Compiling serde_derive v1.0.214 [INFO] [stderr] Compiling either v1.13.0 [INFO] [stderr] Compiling simple_logger v3.0.0 [INFO] [stderr] Compiling rayon v1.10.0 [INFO] [stderr] Compiling memory-stats v1.2.0 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling fastrand v2.1.1 [INFO] [stderr] Compiling zerocopy v0.7.35 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Compiling clap_derive v3.2.25 [INFO] [stderr] Compiling ppv-lite86 v0.2.20 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling clap v3.2.25 [INFO] [stderr] Compiling scalable_cuckoo_filter v0.2.4 [INFO] [stderr] Compiling regex v1.11.1 [INFO] [stderr] Compiling nalgebra v0.29.0 [INFO] [stderr] Compiling bzip2 v0.4.4 [INFO] [stderr] Compiling serde_yaml v0.9.34+deprecated [INFO] [stderr] Compiling bincode v1.3.3 [INFO] [stderr] Compiling smallvec v1.13.2 [INFO] [stderr] Compiling flate2 v1.0.34 [INFO] [stderr] Compiling needletail v0.5.1 [INFO] [stderr] Compiling statrs v0.16.1 [INFO] [stderr] Compiling sylph v0.9.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [optimized + debuginfo] target(s) in 2m 25s [INFO] running `Command { std: "docker" "inspect" "e1dd4ff41decf409bee1087229a5c383bc28971887f3735ff77b48887ea37896", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e1dd4ff41decf409bee1087229a5c383bc28971887f3735ff77b48887ea37896", kill_on_drop: false }` [INFO] [stdout] e1dd4ff41decf409bee1087229a5c383bc28971887f3735ff77b48887ea37896 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+d933cf483edf1605142ac6899ff32536c0ad8b22" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 45e5174c31a3cd0c3096fe4630892b5bedc9c7eb1b3d43881da5627cdd800917 [INFO] running `Command { std: "docker" "start" "-a" "45e5174c31a3cd0c3096fe4630892b5bedc9c7eb1b3d43881da5627cdd800917", kill_on_drop: false }` [INFO] [stderr] Compiling either v1.13.0 [INFO] [stderr] Compiling slab v0.4.9 [INFO] [stderr] Compiling futures-sink v0.3.31 [INFO] [stderr] Compiling futures-core v0.3.31 [INFO] [stderr] Compiling syn v2.0.87 [INFO] [stderr] Compiling predicates-core v1.0.8 [INFO] [stderr] Compiling futures-io v0.3.31 [INFO] [stderr] Compiling pin-project-lite v0.2.15 [INFO] [stderr] Compiling futures-task v0.3.31 [INFO] [stderr] Compiling pin-utils v0.1.0 [INFO] [stderr] Compiling parking_lot_core v0.9.10 [INFO] [stderr] Compiling lock_api v0.4.12 [INFO] [stderr] Compiling scopeguard v1.2.0 [INFO] [stderr] Compiling doc-comment v0.3.3 [INFO] [stderr] Compiling sdd v3.0.4 [INFO] [stderr] Compiling termtree v0.4.1 [INFO] [stderr] Compiling regex-automata v0.1.10 [INFO] [stderr] Compiling difflib v0.4.0 [INFO] [stderr] Compiling float-cmp v0.8.0 [INFO] [stderr] Compiling futures-channel v0.3.31 [INFO] [stderr] Compiling itertools v0.10.5 [INFO] [stderr] Compiling rayon v1.10.0 [INFO] [stderr] Compiling wait-timeout v0.2.0 [INFO] [stderr] Compiling predicates-tree v1.0.11 [INFO] [stderr] Compiling normalize-line-endings v0.3.0 [INFO] [stderr] Compiling difference v2.0.0 [INFO] [stderr] Compiling scc v2.2.4 [INFO] [stderr] Compiling futures-util v0.3.31 [INFO] [stderr] Compiling predicates v1.0.8 [INFO] [stderr] Compiling bstr v0.2.17 [INFO] [stderr] Compiling predicates v2.1.5 [INFO] [stderr] Compiling assert_cmd v1.0.8 [INFO] [stderr] Compiling futures-executor v0.3.31 [INFO] [stderr] Compiling zerocopy-derive v0.7.35 [INFO] [stderr] Compiling serde_derive v1.0.214 [INFO] [stderr] Compiling serial_test_derive v3.1.1 [INFO] [stderr] Compiling futures v0.3.31 [INFO] [stderr] Compiling zerocopy v0.7.35 [INFO] [stderr] Compiling ppv-lite86 v0.2.20 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling serde v1.0.214 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling scalable_cuckoo_filter v0.2.4 [INFO] [stderr] Compiling nalgebra v0.29.0 [INFO] [stderr] Compiling smallvec v1.13.2 [INFO] [stderr] Compiling bincode v1.3.3 [INFO] [stderr] Compiling serde_yaml v0.9.34+deprecated [INFO] [stderr] Compiling parking_lot v0.12.3 [INFO] [stderr] Compiling serial_test v3.1.1 [INFO] [stderr] Compiling statrs v0.16.1 [INFO] [stderr] Compiling sylph v0.9.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `std::fs` [INFO] [stdout] --> tests/integration_test.rs:3:5 [INFO] [stdout] | [INFO] [stdout] 3 | use std::fs; [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `assert_cmd::prelude::*` [INFO] [stdout] --> tests/unit_test.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use assert_cmd::prelude::*; // Add methods on commands [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> tests/unit_test.rs:20:17 [INFO] [stdout] | [INFO] [stdout] 20 | let mut rolling_kmer_f_marker = _mm256_set_epi64x(0, 0, 0, key); [INFO] [stdout] | ----^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `test_hash` is never used [INFO] [stdout] --> tests/unit_test.rs:4:4 [INFO] [stdout] | [INFO] [stdout] 4 | fn test_hash(){ [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> tests/integration_test.rs:9:5 [INFO] [stdout] | [INFO] [stdout] 9 | / Command::new("rm") [INFO] [stdout] 10 | | .arg("-r") [INFO] [stdout] 11 | | .args(["./tests/results/test_sketch_dir"]) [INFO] [stdout] 12 | | .spawn(); [INFO] [stdout] | |________________^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] = note: `#[warn(unused_must_use)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] help: use `let _ = ...` to ignore the resulting value [INFO] [stdout] | [INFO] [stdout] 9 | let _ = Command::new("rm") [INFO] [stdout] | +++++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [optimized + debuginfo] target(s) in 1m 02s [INFO] running `Command { std: "docker" "inspect" "45e5174c31a3cd0c3096fe4630892b5bedc9c7eb1b3d43881da5627cdd800917", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "45e5174c31a3cd0c3096fe4630892b5bedc9c7eb1b3d43881da5627cdd800917", kill_on_drop: false }` [INFO] [stdout] 45e5174c31a3cd0c3096fe4630892b5bedc9c7eb1b3d43881da5627cdd800917 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+d933cf483edf1605142ac6899ff32536c0ad8b22" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 1c9a441155d5c06f6254c91471efc62aec959f1571ca9fa3c99ca5a4d8725538 [INFO] running `Command { std: "docker" "start" "-a" "1c9a441155d5c06f6254c91471efc62aec959f1571ca9fa3c99ca5a4d8725538", kill_on_drop: false }` [INFO] [stderr] warning: unused import: `assert_cmd::prelude::*` [INFO] [stderr] --> tests/unit_test.rs:1:5 [INFO] [stderr] | [INFO] [stderr] 1 | use assert_cmd::prelude::*; // Add methods on commands [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> tests/unit_test.rs:20:17 [INFO] [stderr] | [INFO] [stderr] 20 | let mut rolling_kmer_f_marker = _mm256_set_epi64x(0, 0, 0, key); [INFO] [stderr] | ----^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: function `test_hash` is never used [INFO] [stderr] --> tests/unit_test.rs:4:4 [INFO] [stderr] | [INFO] [stderr] 4 | fn test_hash(){ [INFO] [stderr] | ^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: unused import: `std::fs` [INFO] [stderr] --> tests/integration_test.rs:3:5 [INFO] [stderr] | [INFO] [stderr] 3 | use std::fs; [INFO] [stderr] | ^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: unused `Result` that must be used [INFO] [stderr] --> tests/integration_test.rs:9:5 [INFO] [stderr] | [INFO] [stderr] 9 | / Command::new("rm") [INFO] [stderr] 10 | | .arg("-r") [INFO] [stderr] 11 | | .args(["./tests/results/test_sketch_dir"]) [INFO] [stderr] 12 | | .spawn(); [INFO] [stderr] | |________________^ [INFO] [stderr] | [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] = note: `#[warn(unused_must_use)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] help: use `let _ = ...` to ignore the resulting value [INFO] [stderr] | [INFO] [stderr] 9 | let _ = Command::new("rm") [INFO] [stderr] | +++++++ [INFO] [stderr] [INFO] [stderr] warning: `sylph` (test "unit_test") generated 3 warnings (run `cargo fix --test "unit_test" -p sylph` to apply 2 suggestions) [INFO] [stderr] warning: `sylph` (test "integration_test") generated 2 warnings (run `cargo fix --test "integration_test" -p sylph` to apply 1 suggestion) [INFO] [stderr] Finished `test` profile [optimized + debuginfo] target(s) in 0.18s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/sylph-758eb5c93dd9877b) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/sylph-0ac27bb86b1ae2b0) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running tests/integration_test.rs (/opt/rustwide/target/debug/deps/integration_test-b8ef05693190b94a) [INFO] [stdout] [INFO] [stdout] running 11 tests [INFO] [stdout] test test_fpr ... FAILED [INFO] [stderr] rm: cannot remove './tests/results/test_sketch_dir': No such file or directory [INFO] [stdout] test test_profile_disabling ... FAILED [INFO] [stderr] rm: cannot remove './tests/results/test_sketch_dir': No such file or directory [INFO] [stdout] test test_estimate_read_counts ... ok [INFO] [stderr] rm: cannot remove './tests/results/test_sketch_dir': No such file or directory [INFO] [stderr] rm: cannot remove './tests/results/test_sketch_dir': No such file or directory [INFO] [stdout] test test_profile_vs_query ... ok [INFO] [stderr] rm: cannot remove './tests/results/test_sketch_dir': No such file or directory [INFO] [stdout] test test_sample_names ... FAILED [INFO] [stderr] rm: cannot remove './tests/results/test_sketch_dir': No such file or directory [INFO] [stderr] rm: cannot remove './tests/results/test_sketch_dir': No such file or directory [INFO] [stdout] test test_raw_inputs_profile_simple ... ok [INFO] [stderr] rm: cannot remove './tests/results/test_sketch_dir': No such file or directory [INFO] [stdout] test test_sketch_commands ... FAILED [INFO] [stderr] rm: cannot remove './tests/results/test_sketch_dir': No such file or directory [INFO] [stdout] test test_sketch_fasta_fastq_concord ... FAILED [INFO] [stderr] rm: cannot remove './tests/results/test_sketch_dir': No such file or directory [INFO] [stdout] test test_sketch_list ... FAILED [INFO] [stdout] test test_inspect ... FAILED [INFO] [stdout] test test_raw_inputs_profile_with_sketch ... FAILED [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- test_fpr stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'test_fpr' (28) panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/assert_cmd-1.0.8/src/assert.rs:124:9: [INFO] [stdout] Unexpected failure. [INFO] [stdout] code-1 [INFO] [stdout] stderr=```"2026-03-06T21:56:53.387Z WARN [sylph::sketch] ./tests/results/test_sketch_dir does not have a fasta/fastq/gzip type extension; skipping\n2026-03-06T21:56:53.387Z WARN [sylph::sketch] 0 does not have a fasta/fastq/gzip type extension; skipping\n2026-03-06T21:56:53.387Z INFO [sylph::sketch] Sketching paired sequences...\n2026-03-06T21:56:53.388Z ERROR [sylph::sketch] Could not create directory at \n"``` [INFO] [stdout] command=`"/opt/rustwide/target/debug/sylph" "sketch" "-1" "test_files/t1.fq" "-2" "test_files/t2.fq" "-d " "./tests/results/test_sketch_dir" "0"` [INFO] [stdout] code=1 [INFO] [stdout] stdout=```""``` [INFO] [stdout] stderr=```"2026-03-06T21:56:53.387Z WARN [sylph::sketch] ./tests/results/test_sketch_dir does not have a fasta/fastq/gzip type extension; skipping\n2026-03-06T21:56:53.387Z WARN [sylph::sketch] 0 does not have a fasta/fastq/gzip type extension; skipping\n2026-03-06T21:56:53.387Z INFO [sylph::sketch] Sketching paired sequences...\n2026-03-06T21:56:53.388Z ERROR [sylph::sketch] Could not create directory at \n"``` [INFO] [stdout] [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x61bb3238237a - std[69d51b4813ba037]::backtrace_rs::backtrace::libunwind::trace [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stdout] 1: 0x61bb3238237a - std[69d51b4813ba037]::backtrace_rs::backtrace::trace_unsynchronized:: [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stdout] 2: 0x61bb3238237a - std[69d51b4813ba037]::sys::backtrace::_print_fmt [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:74:9 [INFO] [stdout] 3: 0x61bb3238237a - <::print::DisplayBacktrace as core[51d4adbef590f61]::fmt::Display>::fmt [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:44:26 [INFO] [stdout] 4: 0x61bb32397dba - ::fmt [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/fmt/rt.rs:152:76 [INFO] [stdout] 5: 0x61bb32397dba - core[51d4adbef590f61]::fmt::write [INFO] [stdout] 6: 0x61bb32387f22 - std[69d51b4813ba037]::io::default_write_fmt::> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/io/mod.rs:639:11 [INFO] [stdout] 7: 0x61bb32387f22 - as std[69d51b4813ba037]::io::Write>::write_fmt [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/io/mod.rs:1994:13 [INFO] [stdout] 8: 0x61bb32360d8f - ::print [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:47:9 [INFO] [stdout] 9: 0x61bb32360d8f - std[69d51b4813ba037]::panicking::default_hook::{closure#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:292:27 [INFO] [stdout] 10: 0x61bb3237a739 - std[69d51b4813ba037]::panicking::default_hook [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:316:9 [INFO] [stdout] 11: 0x61bb322f878c - core[51d4adbef590f61]::ops::function::Fn<(&'a std[69d51b4813ba037]::panic::PanicHookInfo<'b>,), Output = ()> + core[51d4adbef590f61]::marker::Sync + core[51d4adbef590f61]::marker::Send> as core[51d4adbef590f61]::ops::function::Fn<(&std[69d51b4813ba037]::panic::PanicHookInfo,)>>::call [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/alloc/src/boxed.rs:2254:9 [INFO] [stdout] 12: 0x61bb322f878c - test[8fe65b9e05bf4c74]::test_main_with_exit_callback::::{closure#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/test/src/lib.rs:145:21 [INFO] [stdout] 13: 0x61bb3237a8f2 - core[51d4adbef590f61]::ops::function::Fn<(&'a std[69d51b4813ba037]::panic::PanicHookInfo<'b>,), Output = ()> + core[51d4adbef590f61]::marker::Sync + core[51d4adbef590f61]::marker::Send> as core[51d4adbef590f61]::ops::function::Fn<(&std[69d51b4813ba037]::panic::PanicHookInfo,)>>::call [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/alloc/src/boxed.rs:2254:9 [INFO] [stdout] 14: 0x61bb3237a8f2 - std[69d51b4813ba037]::panicking::panic_with_hook [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:833:13 [INFO] [stdout] 15: 0x61bb32360e48 - std[69d51b4813ba037]::panicking::panic_handler::{closure#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:698:13 [INFO] [stdout] 16: 0x61bb323587e9 - std[69d51b4813ba037]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:182:18 [INFO] [stdout] 17: 0x61bb32361b5d - __rustc[cb16bc19fc993bd7]::rust_begin_unwind [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:689:5 [INFO] [stdout] 18: 0x61bb3239865c - core[51d4adbef590f61]::panicking::panic_fmt [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/panicking.rs:80:14 [INFO] [stdout] 19: 0x61bb32341da8 - core[51d4adbef590f61]::panicking::panic_display:: [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/panicking.rs:259:5 [INFO] [stdout] 20: 0x61bb32341da8 - ::panic:: [INFO] [stdout] at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/assert_cmd-1.0.8/src/assert.rs:124:9 [INFO] [stdout] 21: 0x61bb32342926 - <::panic as core[51d4adbef590f61]::ops::function::FnOnce<(assert_cmd[1030f3e45aef8ea]::assert::AssertError,)>>::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 22: 0x61bb32342926 - >::unwrap_or_else::<::panic> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/result.rs:1622:23 [INFO] [stdout] 23: 0x61bb32342926 - ::success [INFO] [stdout] at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/assert_cmd-1.0.8/src/assert.rs:249:28 [INFO] [stdout] 24: 0x61bb322e98e8 - integration_test[87207cc6d35b2ef0]::test_fpr::{closure#0} [INFO] [stdout] at /opt/rustwide/workdir/tests/integration_test.rs:390:12 [INFO] [stdout] 25: 0x61bb322e98e8 - >::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 26: 0x61bb3232b56a - serial_test[51829e4c51456ab1]::serial_code_lock::local_serial_core [INFO] [stdout] at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/serial_test-3.1.1/src/serial_code_lock.rs:36:5 [INFO] [stdout] 27: 0x61bb322df8fd - integration_test[87207cc6d35b2ef0]::test_fpr [INFO] [stdout] at /opt/rustwide/workdir/tests/integration_test.rs:376:1 [INFO] [stdout] 28: 0x61bb322df8fd - integration_test[87207cc6d35b2ef0]::test_fpr::{closure#0} [INFO] [stdout] at /opt/rustwide/workdir/tests/integration_test.rs:376:10 [INFO] [stdout] 29: 0x61bb322df8fd - >::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 30: 0x61bb322ec86b - core[51d4adbef590f61]::result::Result<(), alloc[18203fec9a0cd4ec]::string::String> as core[51d4adbef590f61]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 31: 0x61bb322ec86b - test[8fe65b9e05bf4c74]::__rust_begin_short_backtrace::, fn() -> core[51d4adbef590f61]::result::Result<(), alloc[18203fec9a0cd4ec]::string::String>> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/test/src/lib.rs:663:18 [INFO] [stdout] 32: 0x61bb322f925b - test[8fe65b9e05bf4c74]::run_test_in_process::{closure#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/test/src/lib.rs:686:74 [INFO] [stdout] 33: 0x61bb322f925b - as core[51d4adbef590f61]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/panic/unwind_safe.rs:274:9 [INFO] [stdout] 34: 0x61bb322f925b - std[69d51b4813ba037]::panicking::catch_unwind::do_call::, core[51d4adbef590f61]::result::Result<(), alloc[18203fec9a0cd4ec]::string::String>> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:581:40 [INFO] [stdout] 35: 0x61bb322f925b - std[69d51b4813ba037]::panicking::catch_unwind::, core[51d4adbef590f61]::panic::unwind_safe::AssertUnwindSafe> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:544:19 [INFO] [stdout] 36: 0x61bb322f925b - std[69d51b4813ba037]::panic::catch_unwind::, core[51d4adbef590f61]::result::Result<(), alloc[18203fec9a0cd4ec]::string::String>> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panic.rs:359:14 [INFO] [stdout] 37: 0x61bb322f925b - test[8fe65b9e05bf4c74]::run_test_in_process [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/test/src/lib.rs:686:27 [INFO] [stdout] 38: 0x61bb322f925b - test[8fe65b9e05bf4c74]::run_test::{closure#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/test/src/lib.rs:607:43 [INFO] [stdout] 39: 0x61bb322f4974 - test[8fe65b9e05bf4c74]::run_test::{closure#1} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/test/src/lib.rs:637:41 [INFO] [stdout] 40: 0x61bb322f4974 - std[69d51b4813ba037]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:166:18 [INFO] [stdout] 41: 0x61bb322fbe62 - std[69d51b4813ba037]::thread::lifecycle::spawn_unchecked::::{closure#1}::{closure#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/thread/lifecycle.rs:91:13 [INFO] [stdout] 42: 0x61bb322fbe62 - ::{closure#1}::{closure#0}> as core[51d4adbef590f61]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/panic/unwind_safe.rs:274:9 [INFO] [stdout] 43: 0x61bb322fbe62 - std[69d51b4813ba037]::panicking::catch_unwind::do_call::::{closure#1}::{closure#0}>, ()> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:581:40 [INFO] [stdout] 44: 0x61bb322fbe62 - std[69d51b4813ba037]::panicking::catch_unwind::<(), core[51d4adbef590f61]::panic::unwind_safe::AssertUnwindSafe::{closure#1}::{closure#0}>> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:544:19 [INFO] [stdout] 45: 0x61bb322fbe62 - std[69d51b4813ba037]::panic::catch_unwind::::{closure#1}::{closure#0}>, ()> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panic.rs:359:14 [INFO] [stdout] 46: 0x61bb322fbe62 - std[69d51b4813ba037]::thread::lifecycle::spawn_unchecked::::{closure#1} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/thread/lifecycle.rs:89:26 [INFO] [stdout] 47: 0x61bb322fbe62 - ::{closure#1} as core[51d4adbef590f61]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 48: 0x61bb32381bdf - + core[51d4adbef590f61]::marker::Send> as core[51d4adbef590f61]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/alloc/src/boxed.rs:2240:9 [INFO] [stdout] 49: 0x61bb32381bdf - ::new::thread_start [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/thread/unix.rs:118:17 [INFO] [stdout] 50: 0x70b1b7d3aaa4 - [INFO] [stdout] 51: 0x70b1b7dc7a64 - clone [INFO] [stdout] 52: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- test_profile_disabling stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'test_profile_disabling' (31) panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/assert_cmd-1.0.8/src/assert.rs:124:9: [INFO] [stdout] Unexpected failure. [INFO] [stdout] code-101 [INFO] [stdout] stderr=```"2026-03-06T21:56:53.535Z INFO [sylph::sketch] Sketching genomes...\n\nthread \'main\' (43) panicked at src/sketch.rs:425:14:\nCould not create directory for output database file (-o). Exiting...: Os { code: 30, kind: ReadOnlyFilesystem, message: \"Read-only file system\" }\nstack backtrace:\n 0: 0x565dfa1e788a - std[69d51b4813ba037]::backtrace_rs::backtrace::libunwind::trace\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9\n 1: 0x565dfa1e788a - std[69d51b4813ba037]::backtrace_rs::backtrace::trace_unsynchronized::\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14\n 2: 0x565dfa1e788a - std[69d51b4813ba037]::sys::backtrace::_print_fmt\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:74:9\n 3: 0x565dfa1e788a - <::print::DisplayBacktrace as core[51d4adbef590f61]::fmt::Display>::fmt\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:44:26\n 4: 0x565dfa1fd5fa - ::fmt\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/fmt/rt.rs:152:76\n 5: 0x565dfa1fd5fa - core[51d4adbef590f61]::fmt::write\n 6: 0x565dfa1ecfb2 - std[69d51b4813ba037]::io::default_write_fmt::\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/io/mod.rs:639:11\n 7: 0x565dfa1ecfb2 - ::write_fmt\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/io/mod.rs:1994:13\n 8: 0x565dfa1cd1cf - ::print\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:47:9\n 9: 0x565dfa1cd1cf - std[69d51b4813ba037]::panicking::default_hook::{closure#0}\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:292:27\n 10: 0x565dfa1e0121 - std[69d51b4813ba037]::panicking::default_hook\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:319:9\n 11: 0x565dfa1e039b - std[69d51b4813ba037]::panicking::panic_with_hook\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:825:13\n 12: 0x565dfa1cd288 - std[69d51b4813ba037]::panicking::panic_handler::{closure#0}\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:698:13\n 13: 0x565dfa1c4a99 - std[69d51b4813ba037]::sys::backtrace::__rust_end_short_backtrace::\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:182:18\n 14: 0x565dfa1ce00d - __rustc[cb16bc19fc993bd7]::rust_begin_unwind\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:689:5\n 15: 0x565dfa1fde9c - core[51d4adbef590f61]::panicking::panic_fmt\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/panicking.rs:80:14\n 16: 0x565dfa1fdbe2 - core[51d4adbef590f61]::result::unwrap_failed\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/result.rs:1867:5\n 17: 0x565dfa0c444a - >::expect\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/result.rs:1185:23\n 18: 0x565dfa0c444a - sylph[86ac4816f649b013]::sketch::sketch\n at /opt/rustwide/workdir/src/sketch.rs:425:14\n 19: 0x565dfa06d424 - sylph[34eb17a455c8cac6]::main\n at /opt/rustwide/workdir/src/main.rs:26:38\n 20: 0x565dfa06d233 - >::call_once\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/ops/function.rs:250:5\n 21: 0x565dfa06d233 - std[69d51b4813ba037]::sys::backtrace::__rust_begin_short_backtrace::\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:166:18\n 22: 0x565dfa06d249 - std[69d51b4813ba037]::rt::lang_start::<()>::{closure#0}\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/rt.rs:206:18\n 23: 0x565dfa1df3e4 - <&dyn core[51d4adbef590f61]::ops::function::Fn<(), Output = i32> + core[51d4adbef590f61]::panic::unwind_safe::RefUnwindSafe + core[51d4adbef590f61]::marker::Sync as core[51d4adbef590f61]::ops::function::FnOnce<()>>::call_once\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/ops/function.rs:287:21\n 24: 0x565dfa1df3e4 - std[69d51b4813ba037]::panicking::catch_unwind::do_call::<&dyn core[51d4adbef590f61]::ops::function::Fn<(), Output = i32> + core[51d4adbef590f61]::panic::unwind_safe::RefUnwindSafe + core[51d4adbef590f61]::marker::Sync, i32>\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:581:40\n 25: 0x565dfa1df3e4 - std[69d51b4813ba037]::panicking::catch_unwind:: + core[51d4adbef590f61]::panic::unwind_safe::RefUnwindSafe + core[51d4adbef590f61]::marker::Sync>\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:544:19\n 26: 0x565dfa1df3e4 - std[69d51b4813ba037]::panic::catch_unwind::<&dyn core[51d4adbef590f61]::ops::function::Fn<(), Output = i32> + core[51d4adbef590f61]::panic::unwind_safe::RefUnwindSafe + core[51d4adbef590f61]::marker::Sync, i32>\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panic.rs:359:14\n 27: 0x565dfa1df3e4 - std[69d51b4813ba037]::rt::lang_start_internal::{closure#0}\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/rt.rs:175:24\n 28: 0x565dfa1df3e4 - std[69d51b4813ba037]::panicking::catch_unwind::do_call::\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:581:40\n 29: 0x565dfa1df3e4 - std[69d51b4813ba037]::panicking::catch_unwind::\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:544:19\n 30: 0x565dfa1df3e4 - std[69d51b4813ba037]::panic::catch_unwind::\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panic.rs:359:14\n 31: 0x565dfa1df3e4 - std[69d51b4813ba037]::rt::lang_start_internal\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/rt.rs:171:5\n 32: 0x565dfa06d6bc - main\n 33: 0x7b24b7a871ca - \n 34: 0x7b24b7a8728b - __libc_start_main\n 35: 0x565dfa0694a5 - _start\n 36: 0x0 - \n"``` [INFO] [stdout] command=`"/opt/rustwide/target/debug/sylph" "sketch" "-g" "./test_files/e.coli-EC590.fasta.gz" "-o" "./tests/results/test_sketch_dir/db" "-d" "./tests/results/test_sketch_dir" "--disable-profiling"` [INFO] [stdout] code=101 [INFO] [stdout] stdout=```""``` [INFO] [stdout] stderr=```"2026-03-06T21:56:53.535Z INFO [sylph::sketch] Sketching genomes...\n\nthread \'main\' (43) panicked at src/sketch.rs:425:14:\nCould not create directory for output database file (-o). Exiting...: Os { code: 30, kind: ReadOnlyFilesystem, message: \"Read-only file system\" }\nstack backtrace:\n 0: 0x565dfa1e788a - std[69d51b4813ba037]::backtrace_rs::backtrace::libunwind::trace\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9\n 1: 0x565dfa1e788a - std[69d51b4813ba037]::backtrace_rs::backtrace::trace_unsynchronized::\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14\n 2: 0x565dfa1e788a - std[69d51b4813ba037]::sys::backtrace::_print_fmt\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:74:9\n 3: 0x565dfa1e788a - <::print::DisplayBacktrace as core[51d4adbef590f61]::fmt::Display>::fmt\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:44:26\n 4: 0x565dfa1fd5fa - ::fmt\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/fmt/rt.rs:152:76\n 5: 0x565dfa1fd5fa - core[51d4adbef590f61]::fmt::write\n 6: 0x565dfa1ecfb2 - std[69d51b4813ba037]::io::default_write_fmt::\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/io/mod.rs:639:11\n 7: 0x565dfa1ecfb2 - ::write_fmt\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/io/mod.rs:1994:13\n 8: 0x565dfa1cd1cf - ::print\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:47:9\n 9: 0x565dfa1cd1cf - std[69d51b4813ba037]::panicking::default_hook::{closure#0}\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:292:27\n 10: 0x565dfa1e0121 - std[69d51b4813ba037]::panicking::default_hook\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:319:9\n 11: 0x565dfa1e039b - std[69d51b4813ba037]::panicking::panic_with_hook\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:825:13\n 12: 0x565dfa1cd288 - std[69d51b4813ba037]::panicking::panic_handler::{closure#0}\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:698:13\n 13: 0x565dfa1c4a99 - std[69d51b4813ba037]::sys::backtrace::__rust_end_short_backtrace::\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:182:18\n 14: 0x565dfa1ce00d - __rustc[cb16bc19fc993bd7]::rust_begin_unwind\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:689:5\n 15: 0x565dfa1fde9c - core[51d4adbef590f61]::panicking::panic_fmt\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/panicking.rs:80:14\n 16: 0x565dfa1fdbe2 - core[51d4adbef590f61]::result::unwrap_failed\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/result.rs:1867:5\n 17: 0x565dfa0c444a - >::expect\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/result.rs:1185:23\n 18: 0x565dfa0c444a - sylph[86ac4816f649b013]::sketch::sketch\n at /opt/rustwide/workdir/src/sketch.rs:425:14\n 19: 0x565dfa06d424 - sylph[34eb17a455c8cac6]::main\n at /opt/rustwide/workdir/src/main.rs:26:38\n 20: 0x565dfa06d233 - >::call_once\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/ops/function.rs:250:5\n 21: 0x565dfa06d233 - std[69d51b4813ba037]::sys::backtrace::__rust_begin_short_backtrace::\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:166:18\n 22: 0x565dfa06d249 - std[69d51b4813ba037]::rt::lang_start::<()>::{closure#0}\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/rt.rs:206:18\n 23: 0x565dfa1df3e4 - <&dyn core[51d4adbef590f61]::ops::function::Fn<(), Output = i32> + core[51d4adbef590f61]::panic::unwind_safe::RefUnwindSafe + core[51d4adbef590f61]::marker::Sync as core[51d4adbef590f61]::ops::function::FnOnce<()>>::call_once\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/ops/function.rs:287:21\n 24: 0x565dfa1df3e4 - std[69d51b4813ba037]::panicking::catch_unwind::do_call::<&dyn core[51d4adbef590f61]::ops::function::Fn<(), Output = i32> + core[51d4adbef590f61]::panic::unwind_safe::RefUnwindSafe + core[51d4adbef590f61]::marker::Sync, i32>\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:581:40\n 25: 0x565dfa1df3e4 - std[69d51b4813ba037]::panicking::catch_unwind:: + core[51d4adbef590f61]::panic::unwind_safe::RefUnwindSafe + core[51d4adbef590f61]::marker::Sync>\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:544:19\n 26: 0x565dfa1df3e4 - std[69d51b4813ba037]::panic::catch_unwind::<&dyn core[51d4adbef590f61]::ops::function::Fn<(), Output = i32> + core[51d4adbef590f61]::panic::unwind_safe::RefUnwindSafe + core[51d4adbef590f61]::marker::Sync, i32>\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panic.rs:359:14\n 27: 0x565dfa1df3e4 - std[69d51b4813ba037]::rt::lang_start_internal::{closure#0}\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/rt.rs:175:24\n 28: 0x565dfa1df3e4 - std[69d51b4813ba037]::panicking::catch_unwind::do_call::\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:581:40\n 29: 0x565dfa1df3e4 - std[69d51b4813ba037]::panicking::catch_unwind::\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:544:19\n 30: 0x565dfa1df3e4 - std[69d51b4813ba037]::panic::catch_unwind::\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panic.rs:359:14\n 31: 0x565dfa1df3e4 - std[69d51b4813ba037]::rt::lang_start_internal\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/rt.rs:171:5\n 32: 0x565dfa06d6bc - main\n 33: 0x7b24b7a871ca - \n 34: 0x7b24b7a8728b - __libc_start_main\n 35: 0x565dfa0694a5 - _start\n 36: 0x0 - \n"``` [INFO] [stdout] [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x61bb3238237a - std[69d51b4813ba037]::backtrace_rs::backtrace::libunwind::trace [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stdout] 1: 0x61bb3238237a - std[69d51b4813ba037]::backtrace_rs::backtrace::trace_unsynchronized:: [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stdout] 2: 0x61bb3238237a - std[69d51b4813ba037]::sys::backtrace::_print_fmt [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:74:9 [INFO] [stdout] 3: 0x61bb3238237a - <::print::DisplayBacktrace as core[51d4adbef590f61]::fmt::Display>::fmt [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:44:26 [INFO] [stdout] 4: 0x61bb32397dba - ::fmt [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/fmt/rt.rs:152:76 [INFO] [stdout] 5: 0x61bb32397dba - core[51d4adbef590f61]::fmt::write [INFO] [stdout] 6: 0x61bb32387f22 - std[69d51b4813ba037]::io::default_write_fmt::> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/io/mod.rs:639:11 [INFO] [stdout] 7: 0x61bb32387f22 - as std[69d51b4813ba037]::io::Write>::write_fmt [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/io/mod.rs:1994:13 [INFO] [stdout] 8: 0x61bb32360d8f - ::print [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:47:9 [INFO] [stdout] 9: 0x61bb32360d8f - std[69d51b4813ba037]::panicking::default_hook::{closure#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:292:27 [INFO] [stdout] 10: 0x61bb3237a739 - std[69d51b4813ba037]::panicking::default_hook [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:316:9 [INFO] [stdout] 11: 0x61bb322f878c - core[51d4adbef590f61]::ops::function::Fn<(&'a std[69d51b4813ba037]::panic::PanicHookInfo<'b>,), Output = ()> + core[51d4adbef590f61]::marker::Sync + core[51d4adbef590f61]::marker::Send> as core[51d4adbef590f61]::ops::function::Fn<(&std[69d51b4813ba037]::panic::PanicHookInfo,)>>::call [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/alloc/src/boxed.rs:2254:9 [INFO] [stdout] 12: 0x61bb322f878c - test[8fe65b9e05bf4c74]::test_main_with_exit_callback::::{closure#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/test/src/lib.rs:145:21 [INFO] [stdout] 13: 0x61bb3237a8f2 - core[51d4adbef590f61]::ops::function::Fn<(&'a std[69d51b4813ba037]::panic::PanicHookInfo<'b>,), Output = ()> + core[51d4adbef590f61]::marker::Sync + core[51d4adbef590f61]::marker::Send> as core[51d4adbef590f61]::ops::function::Fn<(&std[69d51b4813ba037]::panic::PanicHookInfo,)>>::call [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/alloc/src/boxed.rs:2254:9 [INFO] [stdout] 14: 0x61bb3237a8f2 - std[69d51b4813ba037]::panicking::panic_with_hook [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:833:13 [INFO] [stdout] 15: 0x61bb32360e48 - std[69d51b4813ba037]::panicking::panic_handler::{closure#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:698:13 [INFO] [stdout] 16: 0x61bb323587e9 - std[69d51b4813ba037]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:182:18 [INFO] [stdout] 17: 0x61bb32361b5d - __rustc[cb16bc19fc993bd7]::rust_begin_unwind [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:689:5 [INFO] [stdout] 18: 0x61bb3239865c - core[51d4adbef590f61]::panicking::panic_fmt [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/panicking.rs:80:14 [INFO] [stdout] 19: 0x61bb32341da8 - core[51d4adbef590f61]::panicking::panic_display:: [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/panicking.rs:259:5 [INFO] [stdout] 20: 0x61bb32341da8 - ::panic:: [INFO] [stdout] at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/assert_cmd-1.0.8/src/assert.rs:124:9 [INFO] [stdout] 21: 0x61bb32342926 - <::panic as core[51d4adbef590f61]::ops::function::FnOnce<(assert_cmd[1030f3e45aef8ea]::assert::AssertError,)>>::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 22: 0x61bb32342926 - >::unwrap_or_else::<::panic> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/result.rs:1622:23 [INFO] [stdout] 23: 0x61bb32342926 - ::success [INFO] [stdout] at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/assert_cmd-1.0.8/src/assert.rs:249:28 [INFO] [stdout] 24: 0x61bb322e5c2d - integration_test[87207cc6d35b2ef0]::test_profile_disabling::{closure#0} [INFO] [stdout] at /opt/rustwide/workdir/tests/integration_test.rs:226:12 [INFO] [stdout] 25: 0x61bb322e5c2d - >::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 26: 0x61bb3232b56a - serial_test[51829e4c51456ab1]::serial_code_lock::local_serial_core [INFO] [stdout] at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/serial_test-3.1.1/src/serial_code_lock.rs:36:5 [INFO] [stdout] 27: 0x61bb322df62d - integration_test[87207cc6d35b2ef0]::test_profile_disabling [INFO] [stdout] at /opt/rustwide/workdir/tests/integration_test.rs:210:1 [INFO] [stdout] 28: 0x61bb322df62d - integration_test[87207cc6d35b2ef0]::test_profile_disabling::{closure#0} [INFO] [stdout] at /opt/rustwide/workdir/tests/integration_test.rs:210:10 [INFO] [stdout] 29: 0x61bb322df62d - >::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 30: 0x61bb322ec86b - core[51d4adbef590f61]::result::Result<(), alloc[18203fec9a0cd4ec]::string::String> as core[51d4adbef590f61]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 31: 0x61bb322ec86b - test[8fe65b9e05bf4c74]::__rust_begin_short_backtrace::, fn() -> core[51d4adbef590f61]::result::Result<(), alloc[18203fec9a0cd4ec]::string::String>> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/test/src/lib.rs:663:18 [INFO] [stdout] 32: 0x61bb322f925b - test[8fe65b9e05bf4c74]::run_test_in_process::{closure#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/test/src/lib.rs:686:74 [INFO] [stdout] 33: 0x61bb322f925b - as core[51d4adbef590f61]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/panic/unwind_safe.rs:274:9 [INFO] [stdout] 34: 0x61bb322f925b - std[69d51b4813ba037]::panicking::catch_unwind::do_call::, core[51d4adbef590f61]::result::Result<(), alloc[18203fec9a0cd4ec]::string::String>> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:581:40 [INFO] [stdout] 35: 0x61bb322f925b - std[69d51b4813ba037]::panicking::catch_unwind::, core[51d4adbef590f61]::panic::unwind_safe::AssertUnwindSafe> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:544:19 [INFO] [stdout] 36: 0x61bb322f925b - std[69d51b4813ba037]::panic::catch_unwind::, core[51d4adbef590f61]::result::Result<(), alloc[18203fec9a0cd4ec]::string::String>> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panic.rs:359:14 [INFO] [stdout] 37: 0x61bb322f925b - test[8fe65b9e05bf4c74]::run_test_in_process [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/test/src/lib.rs:686:27 [INFO] [stdout] 38: 0x61bb322f925b - test[8fe65b9e05bf4c74]::run_test::{closure#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/test/src/lib.rs:607:43 [INFO] [stdout] 39: 0x61bb322f4974 - test[8fe65b9e05bf4c74]::run_test::{closure#1} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/test/src/lib.rs:637:41 [INFO] [stdout] 40: 0x61bb322f4974 - std[69d51b4813ba037]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:166:18 [INFO] [stdout] 41: 0x61bb322fbe62 - std[69d51b4813ba037]::thread::lifecycle::spawn_unchecked::::{closure#1}::{closure#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/thread/lifecycle.rs:91:13 [INFO] [stdout] 42: 0x61bb322fbe62 - ::{closure#1}::{closure#0}> as core[51d4adbef590f61]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/panic/unwind_safe.rs:274:9 [INFO] [stdout] 43: 0x61bb322fbe62 - std[69d51b4813ba037]::panicking::catch_unwind::do_call::::{closure#1}::{closure#0}>, ()> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:581:40 [INFO] [stdout] 44: 0x61bb322fbe62 - std[69d51b4813ba037]::panicking::catch_unwind::<(), core[51d4adbef590f61]::panic::unwind_safe::AssertUnwindSafe::{closure#1}::{closure#0}>> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:544:19 [INFO] [stdout] 45: 0x61bb322fbe62 - std[69d51b4813ba037]::panic::catch_unwind::::{closure#1}::{closure#0}>, ()> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panic.rs:359:14 [INFO] [stdout] 46: 0x61bb322fbe62 - std[69d51b4813ba037]::thread::lifecycle::spawn_unchecked::::{closure#1} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/thread/lifecycle.rs:89:26 [INFO] [stdout] 47: 0x61bb322fbe62 - ::{closure#1} as core[51d4adbef590f61]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 48: 0x61bb32381bdf - + core[51d4adbef590f61]::marker::Send> as core[51d4adbef590f61]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/alloc/src/boxed.rs:2240:9 [INFO] [stdout] 49: 0x61bb32381bdf - ::new::thread_start [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/thread/unix.rs:118:17 [INFO] [stdout] 50: 0x70b1b7d3aaa4 - [INFO] [stdout] 51: 0x70b1b7dc7a64 - clone [INFO] [stdout] 52: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- test_sample_names stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'test_sample_names' (35) panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/assert_cmd-1.0.8/src/assert.rs:124:9: [INFO] [stdout] Unexpected failure. [INFO] [stdout] code-1 [INFO] [stdout] stderr=```"2026-03-06T21:56:54.677Z INFO [sylph::sketch] Sketching paired sequences...\n2026-03-06T21:56:54.677Z ERROR [sylph::sketch] Could not create directory at ./tests/results/test_sketch_dir\n"``` [INFO] [stdout] command=`"/opt/rustwide/target/debug/sylph" "sketch" "-1" "test_files/t1.fq" "-2" "test_files/t2.fq" "-d" "./tests/results/test_sketch_dir" "--lS" "./test_files/single_sample.txt"` [INFO] [stdout] code=1 [INFO] [stdout] stdout=```""``` [INFO] [stdout] stderr=```"2026-03-06T21:56:54.677Z INFO [sylph::sketch] Sketching paired sequences...\n2026-03-06T21:56:54.677Z ERROR [sylph::sketch] Could not create directory at ./tests/results/test_sketch_dir\n"``` [INFO] [stdout] [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x61bb3238237a - std[69d51b4813ba037]::backtrace_rs::backtrace::libunwind::trace [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stdout] 1: 0x61bb3238237a - std[69d51b4813ba037]::backtrace_rs::backtrace::trace_unsynchronized:: [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stdout] 2: 0x61bb3238237a - std[69d51b4813ba037]::sys::backtrace::_print_fmt [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:74:9 [INFO] [stdout] 3: 0x61bb3238237a - <::print::DisplayBacktrace as core[51d4adbef590f61]::fmt::Display>::fmt [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:44:26 [INFO] [stdout] 4: 0x61bb32397dba - ::fmt [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/fmt/rt.rs:152:76 [INFO] [stdout] 5: 0x61bb32397dba - core[51d4adbef590f61]::fmt::write [INFO] [stdout] 6: 0x61bb32387f22 - std[69d51b4813ba037]::io::default_write_fmt::> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/io/mod.rs:639:11 [INFO] [stdout] 7: 0x61bb32387f22 - as std[69d51b4813ba037]::io::Write>::write_fmt [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/io/mod.rs:1994:13 [INFO] [stdout] 8: 0x61bb32360d8f - ::print [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:47:9 [INFO] [stdout] 9: 0x61bb32360d8f - std[69d51b4813ba037]::panicking::default_hook::{closure#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:292:27 [INFO] [stdout] 10: 0x61bb3237a739 - std[69d51b4813ba037]::panicking::default_hook [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:316:9 [INFO] [stdout] 11: 0x61bb322f878c - core[51d4adbef590f61]::ops::function::Fn<(&'a std[69d51b4813ba037]::panic::PanicHookInfo<'b>,), Output = ()> + core[51d4adbef590f61]::marker::Sync + core[51d4adbef590f61]::marker::Send> as core[51d4adbef590f61]::ops::function::Fn<(&std[69d51b4813ba037]::panic::PanicHookInfo,)>>::call [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/alloc/src/boxed.rs:2254:9 [INFO] [stdout] 12: 0x61bb322f878c - test[8fe65b9e05bf4c74]::test_main_with_exit_callback::::{closure#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/test/src/lib.rs:145:21 [INFO] [stdout] 13: 0x61bb3237a8f2 - core[51d4adbef590f61]::ops::function::Fn<(&'a std[69d51b4813ba037]::panic::PanicHookInfo<'b>,), Output = ()> + core[51d4adbef590f61]::marker::Sync + core[51d4adbef590f61]::marker::Send> as core[51d4adbef590f61]::ops::function::Fn<(&std[69d51b4813ba037]::panic::PanicHookInfo,)>>::call [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/alloc/src/boxed.rs:2254:9 [INFO] [stdout] 14: 0x61bb3237a8f2 - std[69d51b4813ba037]::panicking::panic_with_hook [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:833:13 [INFO] [stdout] 15: 0x61bb32360e48 - std[69d51b4813ba037]::panicking::panic_handler::{closure#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:698:13 [INFO] [stdout] 16: 0x61bb323587e9 - std[69d51b4813ba037]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:182:18 [INFO] [stdout] 17: 0x61bb32361b5d - __rustc[cb16bc19fc993bd7]::rust_begin_unwind [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:689:5 [INFO] [stdout] 18: 0x61bb3239865c - core[51d4adbef590f61]::panicking::panic_fmt [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/panicking.rs:80:14 [INFO] [stdout] 19: 0x61bb32341da8 - core[51d4adbef590f61]::panicking::panic_display:: [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/panicking.rs:259:5 [INFO] [stdout] 20: 0x61bb32341da8 - ::panic:: [INFO] [stdout] at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/assert_cmd-1.0.8/src/assert.rs:124:9 [INFO] [stdout] 21: 0x61bb32342926 - <::panic as core[51d4adbef590f61]::ops::function::FnOnce<(assert_cmd[1030f3e45aef8ea]::assert::AssertError,)>>::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 22: 0x61bb32342926 - >::unwrap_or_else::<::panic> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/result.rs:1622:23 [INFO] [stdout] 23: 0x61bb32342926 - ::success [INFO] [stdout] at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/assert_cmd-1.0.8/src/assert.rs:249:28 [INFO] [stdout] 24: 0x61bb322e1cf3 - integration_test[87207cc6d35b2ef0]::test_sample_names::{closure#0} [INFO] [stdout] at /opt/rustwide/workdir/tests/integration_test.rs:312:12 [INFO] [stdout] 25: 0x61bb322e1cf3 - >::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 26: 0x61bb3232b56a - serial_test[51829e4c51456ab1]::serial_code_lock::local_serial_core [INFO] [stdout] at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/serial_test-3.1.1/src/serial_code_lock.rs:36:5 [INFO] [stdout] 27: 0x61bb322df47d - integration_test[87207cc6d35b2ef0]::test_sample_names [INFO] [stdout] at /opt/rustwide/workdir/tests/integration_test.rs:296:1 [INFO] [stdout] 28: 0x61bb322df47d - integration_test[87207cc6d35b2ef0]::test_sample_names::{closure#0} [INFO] [stdout] at /opt/rustwide/workdir/tests/integration_test.rs:296:10 [INFO] [stdout] 29: 0x61bb322df47d - >::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 30: 0x61bb322ec86b - core[51d4adbef590f61]::result::Result<(), alloc[18203fec9a0cd4ec]::string::String> as core[51d4adbef590f61]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 31: 0x61bb322ec86b - test[8fe65b9e05bf4c74]::__rust_begin_short_backtrace::, fn() -> core[51d4adbef590f61]::result::Result<(), alloc[18203fec9a0cd4ec]::string::String>> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/test/src/lib.rs:663:18 [INFO] [stdout] 32: 0x61bb322f925b - test[8fe65b9e05bf4c74]::run_test_in_process::{closure#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/test/src/lib.rs:686:74 [INFO] [stdout] 33: 0x61bb322f925b - as core[51d4adbef590f61]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/panic/unwind_safe.rs:274:9 [INFO] [stdout] 34: 0x61bb322f925b - std[69d51b4813ba037]::panicking::catch_unwind::do_call::, core[51d4adbef590f61]::result::Result<(), alloc[18203fec9a0cd4ec]::string::String>> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:581:40 [INFO] [stdout] 35: 0x61bb322f925b - std[69d51b4813ba037]::panicking::catch_unwind::, core[51d4adbef590f61]::panic::unwind_safe::AssertUnwindSafe> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:544:19 [INFO] [stdout] 36: 0x61bb322f925b - std[69d51b4813ba037]::panic::catch_unwind::, core[51d4adbef590f61]::result::Result<(), alloc[18203fec9a0cd4ec]::string::String>> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panic.rs:359:14 [INFO] [stdout] 37: 0x61bb322f925b - test[8fe65b9e05bf4c74]::run_test_in_process [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/test/src/lib.rs:686:27 [INFO] [stdout] 38: 0x61bb322f925b - test[8fe65b9e05bf4c74]::run_test::{closure#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/test/src/lib.rs:607:43 [INFO] [stdout] 39: 0x61bb322f4974 - test[8fe65b9e05bf4c74]::run_test::{closure#1} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/test/src/lib.rs:637:41 [INFO] [stdout] 40: 0x61bb322f4974 - std[69d51b4813ba037]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:166:18 [INFO] [stdout] 41: 0x61bb322fbe62 - std[69d51b4813ba037]::thread::lifecycle::spawn_unchecked::::{closure#1}::{closure#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/thread/lifecycle.rs:91:13 [INFO] [stdout] 42: 0x61bb322fbe62 - ::{closure#1}::{closure#0}> as core[51d4adbef590f61]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/panic/unwind_safe.rs:274:9 [INFO] [stdout] 43: 0x61bb322fbe62 - std[69d51b4813ba037]::panicking::catch_unwind::do_call::::{closure#1}::{closure#0}>, ()> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:581:40 [INFO] [stdout] 44: 0x61bb322fbe62 - std[69d51b4813ba037]::panicking::catch_unwind::<(), core[51d4adbef590f61]::panic::unwind_safe::AssertUnwindSafe::{closure#1}::{closure#0}>> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:544:19 [INFO] [stdout] 45: 0x61bb322fbe62 - std[69d51b4813ba037]::panic::catch_unwind::::{closure#1}::{closure#0}>, ()> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panic.rs:359:14 [INFO] [stdout] 46: 0x61bb322fbe62 - std[69d51b4813ba037]::thread::lifecycle::spawn_unchecked::::{closure#1} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/thread/lifecycle.rs:89:26 [INFO] [stdout] 47: 0x61bb322fbe62 - ::{closure#1} as core[51d4adbef590f61]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 48: 0x61bb32381bdf - + core[51d4adbef590f61]::marker::Send> as core[51d4adbef590f61]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/alloc/src/boxed.rs:2240:9 [INFO] [stdout] 49: 0x61bb32381bdf - ::new::thread_start [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/thread/unix.rs:118:17 [INFO] [stdout] 50: 0x70b1b7d3aaa4 - [INFO] [stdout] 51: 0x70b1b7dc7a64 - clone [INFO] [stdout] 52: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- test_sketch_commands stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'test_sketch_commands' (36) panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/assert_cmd-1.0.8/src/assert.rs:124:9: [INFO] [stdout] Unexpected failure. [INFO] [stdout] code-101 [INFO] [stdout] stderr=```<13799 bytes total>"2026-03-06T21:56:54.948Z INFO [sylph::sketch] Sketching non-paired sequences...\n\nthread \'main\' (86) panicked at src/sketch.rs:374:14:\nCould not create directory for output sample files (-d). Exiting...: Os { code: 30, kind: ReadOnlyFilesystem, message: \"Read-only file system\" }\nstack backtrace:\n 0: 0x5cdadc53b88a - std[69d51b4813ba037]::backtrace_rs::backtrace::libunwind::trace\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9\n 1: 0x5cdadc53b88a - std[69d51b4813ba037]::backtrace_rs::backtrace::trace_unsynchronized::\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14\n 2: 0x5cdadc53b88a - std[69d51b4813ba037]::sys::backtrace::_print_fmt\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:74:9\n 3: 0x5cdadc53b88a - <::print::DisplayBacktrace as core[51d4adbef590f61]::fmt::Display>::fmt\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:44:26\n 4: 0x5cdadc5515fa - ::fmt\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/fmt/rt.rs:152:76\n 5: 0x5cdadc5515fa - core[51d4adbef590f61]::fmt::write\n 6: 0x5cdadc540fb2 - std[69d51b4813ba037]::io::default_write_fmt::\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/io/mod.rs:639:11\n 7: 0x5cdadc540fb2 - ::write_fmt\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/io/mod.rs:1994:13\n 8: 0x5cdad"...<9703 bytes omitted>..."0x5cdadc5333e4 - std[69d51b4813ba037]::panicking::catch_unwind:: + core[51d4adbef590f61]::panic::unwind_safe::RefUnwindSafe + core[51d4adbef590f61]::marker::Sync>\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:544:19\n 42: 0x5cdadc5333e4 - std[69d51b4813ba037]::panic::catch_unwind::<&dyn core[51d4adbef590f61]::ops::function::Fn<(), Output = i32> + core[51d4adbef590f61]::panic::unwind_safe::RefUnwindSafe + core[51d4adbef590f61]::marker::Sync, i32>\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panic.rs:359:14\n 43: 0x5cdadc5333e4 - std[69d51b4813ba037]::rt::lang_start_internal::{closure#0}\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/rt.rs:175:24\n 44: 0x5cdadc5333e4 - std[69d51b4813ba037]::panicking::catch_unwind::do_call::\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:581:40\n 45: 0x5cdadc5333e4 - std[69d51b4813ba037]::panicking::catch_unwind::\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:544:19\n 46: 0x5cdadc5333e4 - std[69d51b4813ba037]::panic::catch_unwind::\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panic.rs:359:14\n 47: 0x5cdadc5333e4 - std[69d51b4813ba037]::rt::lang_start_internal\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/rt.rs:171:5\n 48: 0x5cdadc3c16bc - main\n 49: 0x75df224f91ca - \n 50: 0x75df224f928b - __libc_start_main\n 51: 0x5cdadc3bd4a5 - _start\n 52: 0x0 - \n"``` [INFO] [stdout] command=`"/opt/rustwide/target/debug/sylph" "sketch" "test_files/e.coli-EC590.fasta.gz" "test_files/e.coli-K12.fasta.gz" "test_files/o157_reads.fastq.gz" "-o" "tests/results/test_sketch_dir/db" "-d" "./tests/results/test_sketch_dir"` [INFO] [stdout] code=101 [INFO] [stdout] stdout=```""``` [INFO] [stdout] stderr=```<13799 bytes total>"2026-03-06T21:56:54.948Z INFO [sylph::sketch] Sketching non-paired sequences...\n\nthread \'main\' (86) panicked at src/sketch.rs:374:14:\nCould not create directory for output sample files (-d). Exiting...: Os { code: 30, kind: ReadOnlyFilesystem, message: \"Read-only file system\" }\nstack backtrace:\n 0: 0x5cdadc53b88a - std[69d51b4813ba037]::backtrace_rs::backtrace::libunwind::trace\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9\n 1: 0x5cdadc53b88a - std[69d51b4813ba037]::backtrace_rs::backtrace::trace_unsynchronized::\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14\n 2: 0x5cdadc53b88a - std[69d51b4813ba037]::sys::backtrace::_print_fmt\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:74:9\n 3: 0x5cdadc53b88a - <::print::DisplayBacktrace as core[51d4adbef590f61]::fmt::Display>::fmt\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:44:26\n 4: 0x5cdadc5515fa - ::fmt\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/fmt/rt.rs:152:76\n 5: 0x5cdadc5515fa - core[51d4adbef590f61]::fmt::write\n 6: 0x5cdadc540fb2 - std[69d51b4813ba037]::io::default_write_fmt::\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/io/mod.rs:639:11\n 7: 0x5cdadc540fb2 - ::write_fmt\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/io/mod.rs:1994:13\n 8: 0x5cdad"...<9703 bytes omitted>..."0x5cdadc5333e4 - std[69d51b4813ba037]::panicking::catch_unwind:: + core[51d4adbef590f61]::panic::unwind_safe::RefUnwindSafe + core[51d4adbef590f61]::marker::Sync>\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:544:19\n 42: 0x5cdadc5333e4 - std[69d51b4813ba037]::panic::catch_unwind::<&dyn core[51d4adbef590f61]::ops::function::Fn<(), Output = i32> + core[51d4adbef590f61]::panic::unwind_safe::RefUnwindSafe + core[51d4adbef590f61]::marker::Sync, i32>\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panic.rs:359:14\n 43: 0x5cdadc5333e4 - std[69d51b4813ba037]::rt::lang_start_internal::{closure#0}\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/rt.rs:175:24\n 44: 0x5cdadc5333e4 - std[69d51b4813ba037]::panicking::catch_unwind::do_call::\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:581:40\n 45: 0x5cdadc5333e4 - std[69d51b4813ba037]::panicking::catch_unwind::\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:544:19\n 46: 0x5cdadc5333e4 - std[69d51b4813ba037]::panic::catch_unwind::\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panic.rs:359:14\n 47: 0x5cdadc5333e4 - std[69d51b4813ba037]::rt::lang_start_internal\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/rt.rs:171:5\n 48: 0x5cdadc3c16bc - main\n 49: 0x75df224f91ca - \n 50: 0x75df224f928b - __libc_start_main\n 51: 0x5cdadc3bd4a5 - _start\n 52: 0x0 - \n"``` [INFO] [stdout] [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x61bb3238237a - std[69d51b4813ba037]::backtrace_rs::backtrace::libunwind::trace [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stdout] 1: 0x61bb3238237a - std[69d51b4813ba037]::backtrace_rs::backtrace::trace_unsynchronized:: [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stdout] 2: 0x61bb3238237a - std[69d51b4813ba037]::sys::backtrace::_print_fmt [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:74:9 [INFO] [stdout] 3: 0x61bb3238237a - <::print::DisplayBacktrace as core[51d4adbef590f61]::fmt::Display>::fmt [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:44:26 [INFO] [stdout] 4: 0x61bb32397dba - ::fmt [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/fmt/rt.rs:152:76 [INFO] [stdout] 5: 0x61bb32397dba - core[51d4adbef590f61]::fmt::write [INFO] [stdout] 6: 0x61bb32387f22 - std[69d51b4813ba037]::io::default_write_fmt::> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/io/mod.rs:639:11 [INFO] [stdout] 7: 0x61bb32387f22 - as std[69d51b4813ba037]::io::Write>::write_fmt [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/io/mod.rs:1994:13 [INFO] [stdout] 8: 0x61bb32360d8f - ::print [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:47:9 [INFO] [stdout] 9: 0x61bb32360d8f - std[69d51b4813ba037]::panicking::default_hook::{closure#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:292:27 [INFO] [stdout] 10: 0x61bb3237a739 - std[69d51b4813ba037]::panicking::default_hook [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:316:9 [INFO] [stdout] 11: 0x61bb322f878c - core[51d4adbef590f61]::ops::function::Fn<(&'a std[69d51b4813ba037]::panic::PanicHookInfo<'b>,), Output = ()> + core[51d4adbef590f61]::marker::Sync + core[51d4adbef590f61]::marker::Send> as core[51d4adbef590f61]::ops::function::Fn<(&std[69d51b4813ba037]::panic::PanicHookInfo,)>>::call [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/alloc/src/boxed.rs:2254:9 [INFO] [stdout] 12: 0x61bb322f878c - test[8fe65b9e05bf4c74]::test_main_with_exit_callback::::{closure#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/test/src/lib.rs:145:21 [INFO] [stdout] 13: 0x61bb3237a8f2 - core[51d4adbef590f61]::ops::function::Fn<(&'a std[69d51b4813ba037]::panic::PanicHookInfo<'b>,), Output = ()> + core[51d4adbef590f61]::marker::Sync + core[51d4adbef590f61]::marker::Send> as core[51d4adbef590f61]::ops::function::Fn<(&std[69d51b4813ba037]::panic::PanicHookInfo,)>>::call [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/alloc/src/boxed.rs:2254:9 [INFO] [stdout] 14: 0x61bb3237a8f2 - std[69d51b4813ba037]::panicking::panic_with_hook [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:833:13 [INFO] [stdout] 15: 0x61bb32360e48 - std[69d51b4813ba037]::panicking::panic_handler::{closure#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:698:13 [INFO] [stdout] 16: 0x61bb323587e9 - std[69d51b4813ba037]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:182:18 [INFO] [stdout] 17: 0x61bb32361b5d - __rustc[cb16bc19fc993bd7]::rust_begin_unwind [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:689:5 [INFO] [stdout] 18: 0x61bb3239865c - core[51d4adbef590f61]::panicking::panic_fmt [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/panicking.rs:80:14 [INFO] [stdout] 19: 0x61bb32341da8 - core[51d4adbef590f61]::panicking::panic_display:: [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/panicking.rs:259:5 [INFO] [stdout] 20: 0x61bb32341da8 - ::panic:: [INFO] [stdout] at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/assert_cmd-1.0.8/src/assert.rs:124:9 [INFO] [stdout] 21: 0x61bb32342926 - <::panic as core[51d4adbef590f61]::ops::function::FnOnce<(assert_cmd[1030f3e45aef8ea]::assert::AssertError,)>>::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 22: 0x61bb32342926 - >::unwrap_or_else::<::panic> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/result.rs:1622:23 [INFO] [stdout] 23: 0x61bb32342926 - ::success [INFO] [stdout] at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/assert_cmd-1.0.8/src/assert.rs:249:28 [INFO] [stdout] 24: 0x61bb322e3353 - integration_test[87207cc6d35b2ef0]::test_sketch_commands::{closure#0} [INFO] [stdout] at /opt/rustwide/workdir/tests/integration_test.rs:29:12 [INFO] [stdout] 25: 0x61bb322e3353 - >::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 26: 0x61bb3232b56a - serial_test[51829e4c51456ab1]::serial_code_lock::local_serial_core [INFO] [stdout] at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/serial_test-3.1.1/src/serial_code_lock.rs:36:5 [INFO] [stdout] 27: 0x61bb322df50d - integration_test[87207cc6d35b2ef0]::test_sketch_commands [INFO] [stdout] at /opt/rustwide/workdir/tests/integration_test.rs:15:1 [INFO] [stdout] 28: 0x61bb322df50d - integration_test[87207cc6d35b2ef0]::test_sketch_commands::{closure#0} [INFO] [stdout] at /opt/rustwide/workdir/tests/integration_test.rs:15:10 [INFO] [stdout] 29: 0x61bb322df50d - >::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 30: 0x61bb322ec86b - core[51d4adbef590f61]::result::Result<(), alloc[18203fec9a0cd4ec]::string::String> as core[51d4adbef590f61]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 31: 0x61bb322ec86b - test[8fe65b9e05bf4c74]::__rust_begin_short_backtrace::, fn() -> core[51d4adbef590f61]::result::Result<(), alloc[18203fec9a0cd4ec]::string::String>> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/test/src/lib.rs:663:18 [INFO] [stdout] 32: 0x61bb322f925b - test[8fe65b9e05bf4c74]::run_test_in_process::{closure#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/test/src/lib.rs:686:74 [INFO] [stdout] 33: 0x61bb322f925b - as core[51d4adbef590f61]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/panic/unwind_safe.rs:274:9 [INFO] [stdout] 34: 0x61bb322f925b - std[69d51b4813ba037]::panicking::catch_unwind::do_call::, core[51d4adbef590f61]::result::Result<(), alloc[18203fec9a0cd4ec]::string::String>> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:581:40 [INFO] [stdout] 35: 0x61bb322f925b - std[69d51b4813ba037]::panicking::catch_unwind::, core[51d4adbef590f61]::panic::unwind_safe::AssertUnwindSafe> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:544:19 [INFO] [stdout] 36: 0x61bb322f925b - std[69d51b4813ba037]::panic::catch_unwind::, core[51d4adbef590f61]::result::Result<(), alloc[18203fec9a0cd4ec]::string::String>> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panic.rs:359:14 [INFO] [stdout] 37: 0x61bb322f925b - test[8fe65b9e05bf4c74]::run_test_in_process [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/test/src/lib.rs:686:27 [INFO] [stdout] 38: 0x61bb322f925b - test[8fe65b9e05bf4c74]::run_test::{closure#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/test/src/lib.rs:607:43 [INFO] [stdout] 39: 0x61bb322f4974 - test[8fe65b9e05bf4c74]::run_test::{closure#1} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/test/src/lib.rs:637:41 [INFO] [stdout] 40: 0x61bb322f4974 - std[69d51b4813ba037]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:166:18 [INFO] [stdout] 41: 0x61bb322fbe62 - std[69d51b4813ba037]::thread::lifecycle::spawn_unchecked::::{closure#1}::{closure#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/thread/lifecycle.rs:91:13 [INFO] [stdout] 42: 0x61bb322fbe62 - ::{closure#1}::{closure#0}> as core[51d4adbef590f61]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/panic/unwind_safe.rs:274:9 [INFO] [stdout] 43: 0x61bb322fbe62 - std[69d51b4813ba037]::panicking::catch_unwind::do_call::::{closure#1}::{closure#0}>, ()> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:581:40 [INFO] [stdout] 44: 0x61bb322fbe62 - std[69d51b4813ba037]::panicking::catch_unwind::<(), core[51d4adbef590f61]::panic::unwind_safe::AssertUnwindSafe::{closure#1}::{closure#0}>> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:544:19 [INFO] [stdout] 45: 0x61bb322fbe62 - std[69d51b4813ba037]::panic::catch_unwind::::{closure#1}::{closure#0}>, ()> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panic.rs:359:14 [INFO] [stdout] 46: 0x61bb322fbe62 - std[69d51b4813ba037]::thread::lifecycle::spawn_unchecked::::{closure#1} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/thread/lifecycle.rs:89:26 [INFO] [stdout] 47: 0x61bb322fbe62 - ::{closure#1} as core[51d4adbef590f61]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 48: 0x61bb32381bdf - + core[51d4adbef590f61]::marker::Send> as core[51d4adbef590f61]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/alloc/src/boxed.rs:2240:9 [INFO] [stdout] 49: 0x61bb32381bdf - ::new::thread_start [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/thread/unix.rs:118:17 [INFO] [stdout] 50: 0x70b1b7d3aaa4 - [INFO] [stdout] 51: 0x70b1b7dc7a64 - clone [INFO] [stdout] 52: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- test_sketch_fasta_fastq_concord stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'test_sketch_fasta_fastq_concord' (37) panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/assert_cmd-1.0.8/src/assert.rs:124:9: [INFO] [stdout] Unexpected failure. [INFO] [stdout] code-101 [INFO] [stdout] stderr=```<13799 bytes total>"2026-03-06T21:56:55.124Z INFO [sylph::sketch] Sketching non-paired sequences...\n\nthread \'main\' (91) panicked at src/sketch.rs:374:14:\nCould not create directory for output sample files (-d). Exiting...: Os { code: 30, kind: ReadOnlyFilesystem, message: \"Read-only file system\" }\nstack backtrace:\n 0: 0x5c41be12688a - std[69d51b4813ba037]::backtrace_rs::backtrace::libunwind::trace\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9\n 1: 0x5c41be12688a - std[69d51b4813ba037]::backtrace_rs::backtrace::trace_unsynchronized::\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14\n 2: 0x5c41be12688a - std[69d51b4813ba037]::sys::backtrace::_print_fmt\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:74:9\n 3: 0x5c41be12688a - <::print::DisplayBacktrace as core[51d4adbef590f61]::fmt::Display>::fmt\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:44:26\n 4: 0x5c41be13c5fa - ::fmt\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/fmt/rt.rs:152:76\n 5: 0x5c41be13c5fa - core[51d4adbef590f61]::fmt::write\n 6: 0x5c41be12bfb2 - std[69d51b4813ba037]::io::default_write_fmt::\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/io/mod.rs:639:11\n 7: 0x5c41be12bfb2 - ::write_fmt\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/io/mod.rs:1994:13\n 8: 0x5c41b"...<9703 bytes omitted>..."0x5c41be11e3e4 - std[69d51b4813ba037]::panicking::catch_unwind:: + core[51d4adbef590f61]::panic::unwind_safe::RefUnwindSafe + core[51d4adbef590f61]::marker::Sync>\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:544:19\n 42: 0x5c41be11e3e4 - std[69d51b4813ba037]::panic::catch_unwind::<&dyn core[51d4adbef590f61]::ops::function::Fn<(), Output = i32> + core[51d4adbef590f61]::panic::unwind_safe::RefUnwindSafe + core[51d4adbef590f61]::marker::Sync, i32>\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panic.rs:359:14\n 43: 0x5c41be11e3e4 - std[69d51b4813ba037]::rt::lang_start_internal::{closure#0}\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/rt.rs:175:24\n 44: 0x5c41be11e3e4 - std[69d51b4813ba037]::panicking::catch_unwind::do_call::\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:581:40\n 45: 0x5c41be11e3e4 - std[69d51b4813ba037]::panicking::catch_unwind::\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:544:19\n 46: 0x5c41be11e3e4 - std[69d51b4813ba037]::panic::catch_unwind::\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panic.rs:359:14\n 47: 0x5c41be11e3e4 - std[69d51b4813ba037]::rt::lang_start_internal\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/rt.rs:171:5\n 48: 0x5c41bdfac6bc - main\n 49: 0x7e2f0f8cc1ca - \n 50: 0x7e2f0f8cc28b - __libc_start_main\n 51: 0x5c41bdfa84a5 - _start\n 52: 0x0 - \n"``` [INFO] [stdout] command=`"/opt/rustwide/target/debug/sylph" "sketch" "./test_files/e.coli-EC590.fasta.gz" "./test_files/o157_reads.fastq.gz" "-o" "./tests/results/test_sketch_dir/db" "-d" "./tests/results/test_sketch_dir"` [INFO] [stdout] code=101 [INFO] [stdout] stdout=```""``` [INFO] [stdout] stderr=```<13799 bytes total>"2026-03-06T21:56:55.124Z INFO [sylph::sketch] Sketching non-paired sequences...\n\nthread \'main\' (91) panicked at src/sketch.rs:374:14:\nCould not create directory for output sample files (-d). Exiting...: Os { code: 30, kind: ReadOnlyFilesystem, message: \"Read-only file system\" }\nstack backtrace:\n 0: 0x5c41be12688a - std[69d51b4813ba037]::backtrace_rs::backtrace::libunwind::trace\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9\n 1: 0x5c41be12688a - std[69d51b4813ba037]::backtrace_rs::backtrace::trace_unsynchronized::\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14\n 2: 0x5c41be12688a - std[69d51b4813ba037]::sys::backtrace::_print_fmt\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:74:9\n 3: 0x5c41be12688a - <::print::DisplayBacktrace as core[51d4adbef590f61]::fmt::Display>::fmt\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:44:26\n 4: 0x5c41be13c5fa - ::fmt\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/fmt/rt.rs:152:76\n 5: 0x5c41be13c5fa - core[51d4adbef590f61]::fmt::write\n 6: 0x5c41be12bfb2 - std[69d51b4813ba037]::io::default_write_fmt::\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/io/mod.rs:639:11\n 7: 0x5c41be12bfb2 - ::write_fmt\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/io/mod.rs:1994:13\n 8: 0x5c41b"...<9703 bytes omitted>..."0x5c41be11e3e4 - std[69d51b4813ba037]::panicking::catch_unwind:: + core[51d4adbef590f61]::panic::unwind_safe::RefUnwindSafe + core[51d4adbef590f61]::marker::Sync>\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:544:19\n 42: 0x5c41be11e3e4 - std[69d51b4813ba037]::panic::catch_unwind::<&dyn core[51d4adbef590f61]::ops::function::Fn<(), Output = i32> + core[51d4adbef590f61]::panic::unwind_safe::RefUnwindSafe + core[51d4adbef590f61]::marker::Sync, i32>\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panic.rs:359:14\n 43: 0x5c41be11e3e4 - std[69d51b4813ba037]::rt::lang_start_internal::{closure#0}\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/rt.rs:175:24\n 44: 0x5c41be11e3e4 - std[69d51b4813ba037]::panicking::catch_unwind::do_call::\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:581:40\n 45: 0x5c41be11e3e4 - std[69d51b4813ba037]::panicking::catch_unwind::\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:544:19\n 46: 0x5c41be11e3e4 - std[69d51b4813ba037]::panic::catch_unwind::\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panic.rs:359:14\n 47: 0x5c41be11e3e4 - std[69d51b4813ba037]::rt::lang_start_internal\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/rt.rs:171:5\n 48: 0x5c41bdfac6bc - main\n 49: 0x7e2f0f8cc1ca - \n 50: 0x7e2f0f8cc28b - __libc_start_main\n 51: 0x5c41bdfa84a5 - _start\n 52: 0x0 - \n"``` [INFO] [stdout] [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x61bb3238237a - std[69d51b4813ba037]::backtrace_rs::backtrace::libunwind::trace [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stdout] 1: 0x61bb3238237a - std[69d51b4813ba037]::backtrace_rs::backtrace::trace_unsynchronized:: [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stdout] 2: 0x61bb3238237a - std[69d51b4813ba037]::sys::backtrace::_print_fmt [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:74:9 [INFO] [stdout] 3: 0x61bb3238237a - <::print::DisplayBacktrace as core[51d4adbef590f61]::fmt::Display>::fmt [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:44:26 [INFO] [stdout] 4: 0x61bb32397dba - ::fmt [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/fmt/rt.rs:152:76 [INFO] [stdout] 5: 0x61bb32397dba - core[51d4adbef590f61]::fmt::write [INFO] [stdout] 6: 0x61bb32387f22 - std[69d51b4813ba037]::io::default_write_fmt::> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/io/mod.rs:639:11 [INFO] [stdout] 7: 0x61bb32387f22 - as std[69d51b4813ba037]::io::Write>::write_fmt [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/io/mod.rs:1994:13 [INFO] [stdout] 8: 0x61bb32360d8f - ::print [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:47:9 [INFO] [stdout] 9: 0x61bb32360d8f - std[69d51b4813ba037]::panicking::default_hook::{closure#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:292:27 [INFO] [stdout] 10: 0x61bb3237a739 - std[69d51b4813ba037]::panicking::default_hook [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:316:9 [INFO] [stdout] 11: 0x61bb322f878c - core[51d4adbef590f61]::ops::function::Fn<(&'a std[69d51b4813ba037]::panic::PanicHookInfo<'b>,), Output = ()> + core[51d4adbef590f61]::marker::Sync + core[51d4adbef590f61]::marker::Send> as core[51d4adbef590f61]::ops::function::Fn<(&std[69d51b4813ba037]::panic::PanicHookInfo,)>>::call [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/alloc/src/boxed.rs:2254:9 [INFO] [stdout] 12: 0x61bb322f878c - test[8fe65b9e05bf4c74]::test_main_with_exit_callback::::{closure#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/test/src/lib.rs:145:21 [INFO] [stdout] 13: 0x61bb3237a8f2 - core[51d4adbef590f61]::ops::function::Fn<(&'a std[69d51b4813ba037]::panic::PanicHookInfo<'b>,), Output = ()> + core[51d4adbef590f61]::marker::Sync + core[51d4adbef590f61]::marker::Send> as core[51d4adbef590f61]::ops::function::Fn<(&std[69d51b4813ba037]::panic::PanicHookInfo,)>>::call [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/alloc/src/boxed.rs:2254:9 [INFO] [stdout] 14: 0x61bb3237a8f2 - std[69d51b4813ba037]::panicking::panic_with_hook [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:833:13 [INFO] [stdout] 15: 0x61bb32360e48 - std[69d51b4813ba037]::panicking::panic_handler::{closure#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:698:13 [INFO] [stdout] 16: 0x61bb323587e9 - std[69d51b4813ba037]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:182:18 [INFO] [stdout] 17: 0x61bb32361b5d - __rustc[cb16bc19fc993bd7]::rust_begin_unwind [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:689:5 [INFO] [stdout] 18: 0x61bb3239865c - core[51d4adbef590f61]::panicking::panic_fmt [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/panicking.rs:80:14 [INFO] [stdout] 19: 0x61bb32341da8 - core[51d4adbef590f61]::panicking::panic_display:: [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/panicking.rs:259:5 [INFO] [stdout] 20: 0x61bb32341da8 - ::panic:: [INFO] [stdout] at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/assert_cmd-1.0.8/src/assert.rs:124:9 [INFO] [stdout] 21: 0x61bb32342926 - <::panic as core[51d4adbef590f61]::ops::function::FnOnce<(assert_cmd[1030f3e45aef8ea]::assert::AssertError,)>>::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 22: 0x61bb32342926 - >::unwrap_or_else::<::panic> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/result.rs:1622:23 [INFO] [stdout] 23: 0x61bb32342926 - ::success [INFO] [stdout] at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/assert_cmd-1.0.8/src/assert.rs:249:28 [INFO] [stdout] 24: 0x61bb322e81b4 - integration_test[87207cc6d35b2ef0]::test_sketch_fasta_fastq_concord::{closure#0} [INFO] [stdout] at /opt/rustwide/workdir/tests/integration_test.rs:260:12 [INFO] [stdout] 25: 0x61bb322e81b4 - >::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 26: 0x61bb3232b56a - serial_test[51829e4c51456ab1]::serial_code_lock::local_serial_core [INFO] [stdout] at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/serial_test-3.1.1/src/serial_code_lock.rs:36:5 [INFO] [stdout] 27: 0x61bb322df7dd - integration_test[87207cc6d35b2ef0]::test_sketch_fasta_fastq_concord [INFO] [stdout] at /opt/rustwide/workdir/tests/integration_test.rs:246:1 [INFO] [stdout] 28: 0x61bb322df7dd - integration_test[87207cc6d35b2ef0]::test_sketch_fasta_fastq_concord::{closure#0} [INFO] [stdout] at /opt/rustwide/workdir/tests/integration_test.rs:246:10 [INFO] [stdout] 29: 0x61bb322df7dd - >::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 30: 0x61bb322ec86b - core[51d4adbef590f61]::result::Result<(), alloc[18203fec9a0cd4ec]::string::String> as core[51d4adbef590f61]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 31: 0x61bb322ec86b - test[8fe65b9e05bf4c74]::__rust_begin_short_backtrace::, fn() -> core[51d4adbef590f61]::result::Result<(), alloc[18203fec9a0cd4ec]::string::String>> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/test/src/lib.rs:663:18 [INFO] [stdout] 32: 0x61bb322f925b - test[8fe65b9e05bf4c74]::run_test_in_process::{closure#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/test/src/lib.rs:686:74 [INFO] [stdout] 33: 0x61bb322f925b - as core[51d4adbef590f61]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/panic/unwind_safe.rs:274:9 [INFO] [stdout] 34: 0x61bb322f925b - std[69d51b4813ba037]::panicking::catch_unwind::do_call::, core[51d4adbef590f61]::result::Result<(), alloc[18203fec9a0cd4ec]::string::String>> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:581:40 [INFO] [stdout] 35: 0x61bb322f925b - std[69d51b4813ba037]::panicking::catch_unwind::, core[51d4adbef590f61]::panic::unwind_safe::AssertUnwindSafe> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:544:19 [INFO] [stdout] 36: 0x61bb322f925b - std[69d51b4813ba037]::panic::catch_unwind::, core[51d4adbef590f61]::result::Result<(), alloc[18203fec9a0cd4ec]::string::String>> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panic.rs:359:14 [INFO] [stdout] 37: 0x61bb322f925b - test[8fe65b9e05bf4c74]::run_test_in_process [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/test/src/lib.rs:686:27 [INFO] [stdout] 38: 0x61bb322f925b - test[8fe65b9e05bf4c74]::run_test::{closure#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/test/src/lib.rs:607:43 [INFO] [stdout] 39: 0x61bb322f4974 - test[8fe65b9e05bf4c74]::run_test::{closure#1} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/test/src/lib.rs:637:41 [INFO] [stdout] 40: 0x61bb322f4974 - std[69d51b4813ba037]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:166:18 [INFO] [stdout] 41: 0x61bb322fbe62 - std[69d51b4813ba037]::thread::lifecycle::spawn_unchecked::::{closure#1}::{closure#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/thread/lifecycle.rs:91:13 [INFO] [stdout] 42: 0x61bb322fbe62 - ::{closure#1}::{closure#0}> as core[51d4adbef590f61]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/panic/unwind_safe.rs:274:9 [INFO] [stdout] 43: 0x61bb322fbe62 - std[69d51b4813ba037]::panicking::catch_unwind::do_call::::{closure#1}::{closure#0}>, ()> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:581:40 [INFO] [stdout] 44: 0x61bb322fbe62 - std[69d51b4813ba037]::panicking::catch_unwind::<(), core[51d4adbef590f61]::panic::unwind_safe::AssertUnwindSafe::{closure#1}::{closure#0}>> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:544:19 [INFO] [stdout] 45: 0x61bb322fbe62 - std[69d51b4813ba037]::panic::catch_unwind::::{closure#1}::{closure#0}>, ()> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panic.rs:359:14 [INFO] [stdout] 46: 0x61bb322fbe62 - std[69d51b4813ba037]::thread::lifecycle::spawn_unchecked::::{closure#1} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/thread/lifecycle.rs:89:26 [INFO] [stdout] 47: 0x61bb322fbe62 - ::{closure#1} as core[51d4adbef590f61]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 48: 0x61bb32381bdf - + core[51d4adbef590f61]::marker::Send> as core[51d4adbef590f61]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/alloc/src/boxed.rs:2240:9 [INFO] [stdout] 49: 0x61bb32381bdf - ::new::thread_start [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/thread/unix.rs:118:17 [INFO] [stdout] 50: 0x70b1b7d3aaa4 - [INFO] [stdout] 51: 0x70b1b7dc7a64 - clone [INFO] [stdout] 52: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- test_sketch_list stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'test_sketch_list' (38) panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/assert_cmd-1.0.8/src/assert.rs:124:9: [INFO] [stdout] Unexpected failure. [INFO] [stdout] code-101 [INFO] [stdout] stderr=```<45376 bytes total>"2026-03-06T21:56:55.208Z WARN [sylph::sketch] -o is set but no genomes are present. -o only applies to genomes; see -d for reads\n2026-03-06T21:56:55.208Z INFO [sylph::sketch] Sketching non-paired sequences...\n\nthread \'\' (97) panicked at src/sketch.rs:374:14:\nCould not create directory for output sample files (-d). Exiting...: Os { code: 30, kind: ReadOnlyFilesystem, message: \"Read-only file system\" }\nstack backtrace:\n 0: 0x63f269f4388a - std[69d51b4813ba037]::backtrace_rs::backtrace::libunwind::trace\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9\n 1: 0x63f269f4388a - std[69d51b4813ba037]::backtrace_rs::backtrace::trace_unsynchronized::\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14\n 2: 0x63f269f4388a - std[69d51b4813ba037]::sys::backtrace::_print_fmt\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:74:9\n 3: 0x63f269f4388a - <::print::DisplayBacktrace as core[51d4adbef590f61]::fmt::Display>::fmt\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:44:26\n 4: 0x63f269f595fa - ::fmt\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/fmt/rt.rs:152:76\n 5: 0x63f269f595fa - core[51d4adbef590f61]::fmt::write\n 6: 0x63f269f48fb2 - std[69d51b4813ba037]::io::default_write_fmt::\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/io/mod.rs:639:11\n 7: 0x63f269f48fb2 - ::write_fm"...<41280 bytes omitted>..." at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:544:19\n 49: 0x63f269e700de - std[69d51b4813ba037]::panic::catch_unwind::::spawn::{closure#0}, ()>::{closure#1}::{closure#0}>, ()>\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panic.rs:359:14\n 50: 0x63f269e700de - std[69d51b4813ba037]::thread::lifecycle::spawn_unchecked::<::spawn::{closure#0}, ()>::{closure#1}\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/thread/lifecycle.rs:89:26\n 51: 0x63f269e700de - ::spawn::{closure#0}, ()>::{closure#1} as core[51d4adbef590f61]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0}\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/ops/function.rs:250:5\n 52: 0x63f269f42dff - + core[51d4adbef590f61]::marker::Send> as core[51d4adbef590f61]::ops::function::FnOnce<()>>::call_once\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/alloc/src/boxed.rs:2240:9\n 53: 0x63f269f42dff - ::new::thread_start\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/thread/unix.rs:118:17\n 54: 0x7f7d1e06baa4 - \n 55: 0x7f7d1e0f8a64 - clone\n 56: 0x0 - \n"``` [INFO] [stdout] command=`"/opt/rustwide/target/debug/sylph" "sketch" "-r" "./test_files/e.coli-EC590.fasta.gz" "./test_files/o157_reads.fastq.gz" "-o" "./tests/results/test_sketch_dir/db" "-d" "./tests/results/test_sketch_dir"` [INFO] [stdout] code=101 [INFO] [stdout] stdout=```""``` [INFO] [stdout] stderr=```<45376 bytes total>"2026-03-06T21:56:55.208Z WARN [sylph::sketch] -o is set but no genomes are present. -o only applies to genomes; see -d for reads\n2026-03-06T21:56:55.208Z INFO [sylph::sketch] Sketching non-paired sequences...\n\nthread \'\' (97) panicked at src/sketch.rs:374:14:\nCould not create directory for output sample files (-d). Exiting...: Os { code: 30, kind: ReadOnlyFilesystem, message: \"Read-only file system\" }\nstack backtrace:\n 0: 0x63f269f4388a - std[69d51b4813ba037]::backtrace_rs::backtrace::libunwind::trace\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9\n 1: 0x63f269f4388a - std[69d51b4813ba037]::backtrace_rs::backtrace::trace_unsynchronized::\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14\n 2: 0x63f269f4388a - std[69d51b4813ba037]::sys::backtrace::_print_fmt\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:74:9\n 3: 0x63f269f4388a - <::print::DisplayBacktrace as core[51d4adbef590f61]::fmt::Display>::fmt\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:44:26\n 4: 0x63f269f595fa - ::fmt\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/fmt/rt.rs:152:76\n 5: 0x63f269f595fa - core[51d4adbef590f61]::fmt::write\n 6: 0x63f269f48fb2 - std[69d51b4813ba037]::io::default_write_fmt::\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/io/mod.rs:639:11\n 7: 0x63f269f48fb2 - ::write_fm"...<41280 bytes omitted>..." at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:544:19\n 49: 0x63f269e700de - std[69d51b4813ba037]::panic::catch_unwind::::spawn::{closure#0}, ()>::{closure#1}::{closure#0}>, ()>\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panic.rs:359:14\n 50: 0x63f269e700de - std[69d51b4813ba037]::thread::lifecycle::spawn_unchecked::<::spawn::{closure#0}, ()>::{closure#1}\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/thread/lifecycle.rs:89:26\n 51: 0x63f269e700de - ::spawn::{closure#0}, ()>::{closure#1} as core[51d4adbef590f61]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0}\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/ops/function.rs:250:5\n 52: 0x63f269f42dff - + core[51d4adbef590f61]::marker::Send> as core[51d4adbef590f61]::ops::function::FnOnce<()>>::call_once\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/alloc/src/boxed.rs:2240:9\n 53: 0x63f269f42dff - ::new::thread_start\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/thread/unix.rs:118:17\n 54: 0x7f7d1e06baa4 - \n 55: 0x7f7d1e0f8a64 - clone\n 56: 0x0 - \n"``` [INFO] [stdout] [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x61bb3238237a - std[69d51b4813ba037]::backtrace_rs::backtrace::libunwind::trace [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stdout] 1: 0x61bb3238237a - std[69d51b4813ba037]::backtrace_rs::backtrace::trace_unsynchronized:: [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stdout] 2: 0x61bb3238237a - std[69d51b4813ba037]::sys::backtrace::_print_fmt [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:74:9 [INFO] [stdout] 3: 0x61bb3238237a - <::print::DisplayBacktrace as core[51d4adbef590f61]::fmt::Display>::fmt [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:44:26 [INFO] [stdout] 4: 0x61bb32397dba - ::fmt [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/fmt/rt.rs:152:76 [INFO] [stdout] 5: 0x61bb32397dba - core[51d4adbef590f61]::fmt::write [INFO] [stdout] 6: 0x61bb32387f22 - std[69d51b4813ba037]::io::default_write_fmt::> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/io/mod.rs:639:11 [INFO] [stdout] 7: 0x61bb32387f22 - as std[69d51b4813ba037]::io::Write>::write_fmt [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/io/mod.rs:1994:13 [INFO] [stdout] 8: 0x61bb32360d8f - ::print [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:47:9 [INFO] [stdout] 9: 0x61bb32360d8f - std[69d51b4813ba037]::panicking::default_hook::{closure#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:292:27 [INFO] [stdout] 10: 0x61bb3237a739 - std[69d51b4813ba037]::panicking::default_hook [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:316:9 [INFO] [stdout] 11: 0x61bb322f878c - core[51d4adbef590f61]::ops::function::Fn<(&'a std[69d51b4813ba037]::panic::PanicHookInfo<'b>,), Output = ()> + core[51d4adbef590f61]::marker::Sync + core[51d4adbef590f61]::marker::Send> as core[51d4adbef590f61]::ops::function::Fn<(&std[69d51b4813ba037]::panic::PanicHookInfo,)>>::call [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/alloc/src/boxed.rs:2254:9 [INFO] [stdout] 12: 0x61bb322f878c - test[8fe65b9e05bf4c74]::test_main_with_exit_callback::::{closure#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/test/src/lib.rs:145:21 [INFO] [stdout] 13: 0x61bb3237a8f2 - core[51d4adbef590f61]::ops::function::Fn<(&'a std[69d51b4813ba037]::panic::PanicHookInfo<'b>,), Output = ()> + core[51d4adbef590f61]::marker::Sync + core[51d4adbef590f61]::marker::Send> as core[51d4adbef590f61]::ops::function::Fn<(&std[69d51b4813ba037]::panic::PanicHookInfo,)>>::call [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/alloc/src/boxed.rs:2254:9 [INFO] [stdout] 14: 0x61bb3237a8f2 - std[69d51b4813ba037]::panicking::panic_with_hook [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:833:13 [INFO] [stdout] 15: 0x61bb32360e48 - std[69d51b4813ba037]::panicking::panic_handler::{closure#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:698:13 [INFO] [stdout] 16: 0x61bb323587e9 - std[69d51b4813ba037]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:182:18 [INFO] [stdout] 17: 0x61bb32361b5d - __rustc[cb16bc19fc993bd7]::rust_begin_unwind [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:689:5 [INFO] [stdout] 18: 0x61bb3239865c - core[51d4adbef590f61]::panicking::panic_fmt [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/panicking.rs:80:14 [INFO] [stdout] 19: 0x61bb32341da8 - core[51d4adbef590f61]::panicking::panic_display:: [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/panicking.rs:259:5 [INFO] [stdout] 20: 0x61bb32341da8 - ::panic:: [INFO] [stdout] at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/assert_cmd-1.0.8/src/assert.rs:124:9 [INFO] [stdout] 21: 0x61bb32342926 - <::panic as core[51d4adbef590f61]::ops::function::FnOnce<(assert_cmd[1030f3e45aef8ea]::assert::AssertError,)>>::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 22: 0x61bb32342926 - >::unwrap_or_else::<::panic> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/result.rs:1622:23 [INFO] [stdout] 23: 0x61bb32342926 - ::success [INFO] [stdout] at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/assert_cmd-1.0.8/src/assert.rs:249:28 [INFO] [stdout] 24: 0x61bb322e0878 - integration_test[87207cc6d35b2ef0]::test_sketch_list::{closure#0} [INFO] [stdout] at /opt/rustwide/workdir/tests/integration_test.rs:158:12 [INFO] [stdout] 25: 0x61bb322e0878 - >::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 26: 0x61bb3232b56a - serial_test[51829e4c51456ab1]::serial_code_lock::local_serial_core [INFO] [stdout] at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/serial_test-3.1.1/src/serial_code_lock.rs:36:5 [INFO] [stdout] 27: 0x61bb322df3ed - integration_test[87207cc6d35b2ef0]::test_sketch_list [INFO] [stdout] at /opt/rustwide/workdir/tests/integration_test.rs:143:1 [INFO] [stdout] 28: 0x61bb322df3ed - integration_test[87207cc6d35b2ef0]::test_sketch_list::{closure#0} [INFO] [stdout] at /opt/rustwide/workdir/tests/integration_test.rs:143:10 [INFO] [stdout] 29: 0x61bb322df3ed - >::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 30: 0x61bb322ec86b - core[51d4adbef590f61]::result::Result<(), alloc[18203fec9a0cd4ec]::string::String> as core[51d4adbef590f61]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 31: 0x61bb322ec86b - test[8fe65b9e05bf4c74]::__rust_begin_short_backtrace::, fn() -> core[51d4adbef590f61]::result::Result<(), alloc[18203fec9a0cd4ec]::string::String>> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/test/src/lib.rs:663:18 [INFO] [stdout] 32: 0x61bb322f925b - test[8fe65b9e05bf4c74]::run_test_in_process::{closure#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/test/src/lib.rs:686:74 [INFO] [stdout] 33: 0x61bb322f925b - as core[51d4adbef590f61]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/panic/unwind_safe.rs:274:9 [INFO] [stdout] 34: 0x61bb322f925b - std[69d51b4813ba037]::panicking::catch_unwind::do_call::, core[51d4adbef590f61]::result::Result<(), alloc[18203fec9a0cd4ec]::string::String>> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:581:40 [INFO] [stdout] 35: 0x61bb322f925b - std[69d51b4813ba037]::panicking::catch_unwind::, core[51d4adbef590f61]::panic::unwind_safe::AssertUnwindSafe> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:544:19 [INFO] [stdout] 36: 0x61bb322f925b - std[69d51b4813ba037]::panic::catch_unwind::, core[51d4adbef590f61]::result::Result<(), alloc[18203fec9a0cd4ec]::string::String>> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panic.rs:359:14 [INFO] [stdout] 37: 0x61bb322f925b - test[8fe65b9e05bf4c74]::run_test_in_process [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/test/src/lib.rs:686:27 [INFO] [stdout] 38: 0x61bb322f925b - test[8fe65b9e05bf4c74]::run_test::{closure#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/test/src/lib.rs:607:43 [INFO] [stdout] 39: 0x61bb322f4974 - test[8fe65b9e05bf4c74]::run_test::{closure#1} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/test/src/lib.rs:637:41 [INFO] [stdout] 40: 0x61bb322f4974 - std[69d51b4813ba037]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:166:18 [INFO] [stdout] 41: 0x61bb322fbe62 - std[69d51b4813ba037]::thread::lifecycle::spawn_unchecked::::{closure#1}::{closure#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/thread/lifecycle.rs:91:13 [INFO] [stdout] 42: 0x61bb322fbe62 - ::{closure#1}::{closure#0}> as core[51d4adbef590f61]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/panic/unwind_safe.rs:274:9 [INFO] [stdout] 43: 0x61bb322fbe62 - std[69d51b4813ba037]::panicking::catch_unwind::do_call::::{closure#1}::{closure#0}>, ()> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:581:40 [INFO] [stdout] 44: 0x61bb322fbe62 - std[69d51b4813ba037]::panicking::catch_unwind::<(), core[51d4adbef590f61]::panic::unwind_safe::AssertUnwindSafe::{closure#1}::{closure#0}>> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:544:19 [INFO] [stdout] 45: 0x61bb322fbe62 - std[69d51b4813ba037]::panic::catch_unwind::::{closure#1}::{closure#0}>, ()> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panic.rs:359:14 [INFO] [stdout] 46: 0x61bb322fbe62 - std[69d51b4813ba037]::thread::lifecycle::spawn_unchecked::::{closure#1} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/thread/lifecycle.rs:89:26 [INFO] [stdout] 47: 0x61bb322fbe62 - ::{closure#1} as core[51d4adbef590f61]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 48: 0x61bb32381bdf - + core[51d4adbef590f61]::marker::Send> as core[51d4adbef590f61]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/alloc/src/boxed.rs:2240:9 [INFO] [stdout] 49: 0x61bb32381bdf - ::new::thread_start [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/thread/unix.rs:118:17 [INFO] [stdout] 50: 0x70b1b7d3aaa4 - [INFO] [stdout] 51: 0x70b1b7dc7a64 - clone [INFO] [stdout] 52: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- test_inspect stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'test_inspect' (30) panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/assert_cmd-1.0.8/src/assert.rs:124:9: [INFO] [stdout] Unexpected failure. [INFO] [stdout] code-101 [INFO] [stdout] stderr=```<13800 bytes total>"2026-03-06T21:56:55.352Z INFO [sylph::sketch] Sketching non-paired sequences...\n\nthread \'main\' (100) panicked at src/sketch.rs:374:14:\nCould not create directory for output sample files (-d). Exiting...: Os { code: 30, kind: ReadOnlyFilesystem, message: \"Read-only file system\" }\nstack backtrace:\n 0: 0x64e2f5e7f88a - std[69d51b4813ba037]::backtrace_rs::backtrace::libunwind::trace\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9\n 1: 0x64e2f5e7f88a - std[69d51b4813ba037]::backtrace_rs::backtrace::trace_unsynchronized::\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14\n 2: 0x64e2f5e7f88a - std[69d51b4813ba037]::sys::backtrace::_print_fmt\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:74:9\n 3: 0x64e2f5e7f88a - <::print::DisplayBacktrace as core[51d4adbef590f61]::fmt::Display>::fmt\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:44:26\n 4: 0x64e2f5e955fa - ::fmt\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/fmt/rt.rs:152:76\n 5: 0x64e2f5e955fa - core[51d4adbef590f61]::fmt::write\n 6: 0x64e2f5e84fb2 - std[69d51b4813ba037]::io::default_write_fmt::\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/io/mod.rs:639:11\n 7: 0x64e2f5e84fb2 - ::write_fmt\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/io/mod.rs:1994:13\n 8: 0x64e2"...<9704 bytes omitted>..."0x64e2f5e773e4 - std[69d51b4813ba037]::panicking::catch_unwind:: + core[51d4adbef590f61]::panic::unwind_safe::RefUnwindSafe + core[51d4adbef590f61]::marker::Sync>\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:544:19\n 42: 0x64e2f5e773e4 - std[69d51b4813ba037]::panic::catch_unwind::<&dyn core[51d4adbef590f61]::ops::function::Fn<(), Output = i32> + core[51d4adbef590f61]::panic::unwind_safe::RefUnwindSafe + core[51d4adbef590f61]::marker::Sync, i32>\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panic.rs:359:14\n 43: 0x64e2f5e773e4 - std[69d51b4813ba037]::rt::lang_start_internal::{closure#0}\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/rt.rs:175:24\n 44: 0x64e2f5e773e4 - std[69d51b4813ba037]::panicking::catch_unwind::do_call::\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:581:40\n 45: 0x64e2f5e773e4 - std[69d51b4813ba037]::panicking::catch_unwind::\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:544:19\n 46: 0x64e2f5e773e4 - std[69d51b4813ba037]::panic::catch_unwind::\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panic.rs:359:14\n 47: 0x64e2f5e773e4 - std[69d51b4813ba037]::rt::lang_start_internal\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/rt.rs:171:5\n 48: 0x64e2f5d056bc - main\n 49: 0x7b25bd29b1ca - \n 50: 0x7b25bd29b28b - __libc_start_main\n 51: 0x64e2f5d014a5 - _start\n 52: 0x0 - \n"``` [INFO] [stdout] command=`"/opt/rustwide/target/debug/sylph" "sketch" "test_files/e.coli-EC590.fasta.gz" "test_files/e.coli-K12.fasta.gz" "test_files/o157_reads.fastq.gz" "-o" "tests/results/test_sketch_dir/db" "-d" "./tests/results/test_sketch_dir"` [INFO] [stdout] code=101 [INFO] [stdout] stdout=```""``` [INFO] [stdout] stderr=```<13800 bytes total>"2026-03-06T21:56:55.352Z INFO [sylph::sketch] Sketching non-paired sequences...\n\nthread \'main\' (100) panicked at src/sketch.rs:374:14:\nCould not create directory for output sample files (-d). Exiting...: Os { code: 30, kind: ReadOnlyFilesystem, message: \"Read-only file system\" }\nstack backtrace:\n 0: 0x64e2f5e7f88a - std[69d51b4813ba037]::backtrace_rs::backtrace::libunwind::trace\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9\n 1: 0x64e2f5e7f88a - std[69d51b4813ba037]::backtrace_rs::backtrace::trace_unsynchronized::\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14\n 2: 0x64e2f5e7f88a - std[69d51b4813ba037]::sys::backtrace::_print_fmt\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:74:9\n 3: 0x64e2f5e7f88a - <::print::DisplayBacktrace as core[51d4adbef590f61]::fmt::Display>::fmt\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:44:26\n 4: 0x64e2f5e955fa - ::fmt\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/fmt/rt.rs:152:76\n 5: 0x64e2f5e955fa - core[51d4adbef590f61]::fmt::write\n 6: 0x64e2f5e84fb2 - std[69d51b4813ba037]::io::default_write_fmt::\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/io/mod.rs:639:11\n 7: 0x64e2f5e84fb2 - ::write_fmt\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/io/mod.rs:1994:13\n 8: 0x64e2"...<9704 bytes omitted>..."0x64e2f5e773e4 - std[69d51b4813ba037]::panicking::catch_unwind:: + core[51d4adbef590f61]::panic::unwind_safe::RefUnwindSafe + core[51d4adbef590f61]::marker::Sync>\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:544:19\n 42: 0x64e2f5e773e4 - std[69d51b4813ba037]::panic::catch_unwind::<&dyn core[51d4adbef590f61]::ops::function::Fn<(), Output = i32> + core[51d4adbef590f61]::panic::unwind_safe::RefUnwindSafe + core[51d4adbef590f61]::marker::Sync, i32>\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panic.rs:359:14\n 43: 0x64e2f5e773e4 - std[69d51b4813ba037]::rt::lang_start_internal::{closure#0}\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/rt.rs:175:24\n 44: 0x64e2f5e773e4 - std[69d51b4813ba037]::panicking::catch_unwind::do_call::\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:581:40\n 45: 0x64e2f5e773e4 - std[69d51b4813ba037]::panicking::catch_unwind::\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:544:19\n 46: 0x64e2f5e773e4 - std[69d51b4813ba037]::panic::catch_unwind::\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panic.rs:359:14\n 47: 0x64e2f5e773e4 - std[69d51b4813ba037]::rt::lang_start_internal\n at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/rt.rs:171:5\n 48: 0x64e2f5d056bc - main\n 49: 0x7b25bd29b1ca - \n 50: 0x7b25bd29b28b - __libc_start_main\n 51: 0x64e2f5d014a5 - _start\n 52: 0x0 - \n"``` [INFO] [stdout] [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x61bb3238237a - std[69d51b4813ba037]::backtrace_rs::backtrace::libunwind::trace [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stdout] 1: 0x61bb3238237a - std[69d51b4813ba037]::backtrace_rs::backtrace::trace_unsynchronized:: [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stdout] 2: 0x61bb3238237a - std[69d51b4813ba037]::sys::backtrace::_print_fmt [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:74:9 [INFO] [stdout] 3: 0x61bb3238237a - <::print::DisplayBacktrace as core[51d4adbef590f61]::fmt::Display>::fmt [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:44:26 [INFO] [stdout] 4: 0x61bb32397dba - ::fmt [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/fmt/rt.rs:152:76 [INFO] [stdout] 5: 0x61bb32397dba - core[51d4adbef590f61]::fmt::write [INFO] [stdout] 6: 0x61bb32387f22 - std[69d51b4813ba037]::io::default_write_fmt::> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/io/mod.rs:639:11 [INFO] [stdout] 7: 0x61bb32387f22 - as std[69d51b4813ba037]::io::Write>::write_fmt [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/io/mod.rs:1994:13 [INFO] [stdout] 8: 0x61bb32360d8f - ::print [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:47:9 [INFO] [stdout] 9: 0x61bb32360d8f - std[69d51b4813ba037]::panicking::default_hook::{closure#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:292:27 [INFO] [stdout] 10: 0x61bb3237a739 - std[69d51b4813ba037]::panicking::default_hook [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:316:9 [INFO] [stdout] 11: 0x61bb322f878c - core[51d4adbef590f61]::ops::function::Fn<(&'a std[69d51b4813ba037]::panic::PanicHookInfo<'b>,), Output = ()> + core[51d4adbef590f61]::marker::Sync + core[51d4adbef590f61]::marker::Send> as core[51d4adbef590f61]::ops::function::Fn<(&std[69d51b4813ba037]::panic::PanicHookInfo,)>>::call [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/alloc/src/boxed.rs:2254:9 [INFO] [stdout] 12: 0x61bb322f878c - test[8fe65b9e05bf4c74]::test_main_with_exit_callback::::{closure#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/test/src/lib.rs:145:21 [INFO] [stdout] 13: 0x61bb3237a8f2 - core[51d4adbef590f61]::ops::function::Fn<(&'a std[69d51b4813ba037]::panic::PanicHookInfo<'b>,), Output = ()> + core[51d4adbef590f61]::marker::Sync + core[51d4adbef590f61]::marker::Send> as core[51d4adbef590f61]::ops::function::Fn<(&std[69d51b4813ba037]::panic::PanicHookInfo,)>>::call [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/alloc/src/boxed.rs:2254:9 [INFO] [stdout] 14: 0x61bb3237a8f2 - std[69d51b4813ba037]::panicking::panic_with_hook [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:833:13 [INFO] [stdout] 15: 0x61bb32360e48 - std[69d51b4813ba037]::panicking::panic_handler::{closure#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:698:13 [INFO] [stdout] 16: 0x61bb323587e9 - std[69d51b4813ba037]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:182:18 [INFO] [stdout] 17: 0x61bb32361b5d - __rustc[cb16bc19fc993bd7]::rust_begin_unwind [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:689:5 [INFO] [stdout] 18: 0x61bb3239865c - core[51d4adbef590f61]::panicking::panic_fmt [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/panicking.rs:80:14 [INFO] [stdout] 19: 0x61bb32341da8 - core[51d4adbef590f61]::panicking::panic_display:: [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/panicking.rs:259:5 [INFO] [stdout] 20: 0x61bb32341da8 - ::panic:: [INFO] [stdout] at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/assert_cmd-1.0.8/src/assert.rs:124:9 [INFO] [stdout] 21: 0x61bb32342926 - <::panic as core[51d4adbef590f61]::ops::function::FnOnce<(assert_cmd[1030f3e45aef8ea]::assert::AssertError,)>>::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 22: 0x61bb32342926 - >::unwrap_or_else::<::panic> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/result.rs:1622:23 [INFO] [stdout] 23: 0x61bb32342926 - ::success [INFO] [stdout] at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/assert_cmd-1.0.8/src/assert.rs:249:28 [INFO] [stdout] 24: 0x61bb322dfa78 - integration_test[87207cc6d35b2ef0]::test_inspect::{closure#0} [INFO] [stdout] at /opt/rustwide/workdir/tests/integration_test.rs:564:12 [INFO] [stdout] 25: 0x61bb322dfa78 - >::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 26: 0x61bb3232b56a - serial_test[51829e4c51456ab1]::serial_code_lock::local_serial_core [INFO] [stdout] at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/serial_test-3.1.1/src/serial_code_lock.rs:36:5 [INFO] [stdout] 27: 0x61bb322df35d - integration_test[87207cc6d35b2ef0]::test_inspect [INFO] [stdout] at /opt/rustwide/workdir/tests/integration_test.rs:550:1 [INFO] [stdout] 28: 0x61bb322df35d - integration_test[87207cc6d35b2ef0]::test_inspect::{closure#0} [INFO] [stdout] at /opt/rustwide/workdir/tests/integration_test.rs:550:10 [INFO] [stdout] 29: 0x61bb322df35d - >::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 30: 0x61bb322ec86b - core[51d4adbef590f61]::result::Result<(), alloc[18203fec9a0cd4ec]::string::String> as core[51d4adbef590f61]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 31: 0x61bb322ec86b - test[8fe65b9e05bf4c74]::__rust_begin_short_backtrace::, fn() -> core[51d4adbef590f61]::result::Result<(), alloc[18203fec9a0cd4ec]::string::String>> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/test/src/lib.rs:663:18 [INFO] [stdout] 32: 0x61bb322f925b - test[8fe65b9e05bf4c74]::run_test_in_process::{closure#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/test/src/lib.rs:686:74 [INFO] [stdout] 33: 0x61bb322f925b - as core[51d4adbef590f61]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/panic/unwind_safe.rs:274:9 [INFO] [stdout] 34: 0x61bb322f925b - std[69d51b4813ba037]::panicking::catch_unwind::do_call::, core[51d4adbef590f61]::result::Result<(), alloc[18203fec9a0cd4ec]::string::String>> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:581:40 [INFO] [stdout] 35: 0x61bb322f925b - std[69d51b4813ba037]::panicking::catch_unwind::, core[51d4adbef590f61]::panic::unwind_safe::AssertUnwindSafe> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:544:19 [INFO] [stdout] 36: 0x61bb322f925b - std[69d51b4813ba037]::panic::catch_unwind::, core[51d4adbef590f61]::result::Result<(), alloc[18203fec9a0cd4ec]::string::String>> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panic.rs:359:14 [INFO] [stdout] 37: 0x61bb322f925b - test[8fe65b9e05bf4c74]::run_test_in_process [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/test/src/lib.rs:686:27 [INFO] [stdout] 38: 0x61bb322f925b - test[8fe65b9e05bf4c74]::run_test::{closure#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/test/src/lib.rs:607:43 [INFO] [stdout] 39: 0x61bb322f4974 - test[8fe65b9e05bf4c74]::run_test::{closure#1} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/test/src/lib.rs:637:41 [INFO] [stdout] 40: 0x61bb322f4974 - std[69d51b4813ba037]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:166:18 [INFO] [stdout] 41: 0x61bb322fbe62 - std[69d51b4813ba037]::thread::lifecycle::spawn_unchecked::::{closure#1}::{closure#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/thread/lifecycle.rs:91:13 [INFO] [stdout] 42: 0x61bb322fbe62 - ::{closure#1}::{closure#0}> as core[51d4adbef590f61]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/panic/unwind_safe.rs:274:9 [INFO] [stdout] 43: 0x61bb322fbe62 - std[69d51b4813ba037]::panicking::catch_unwind::do_call::::{closure#1}::{closure#0}>, ()> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:581:40 [INFO] [stdout] 44: 0x61bb322fbe62 - std[69d51b4813ba037]::panicking::catch_unwind::<(), core[51d4adbef590f61]::panic::unwind_safe::AssertUnwindSafe::{closure#1}::{closure#0}>> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:544:19 [INFO] [stdout] 45: 0x61bb322fbe62 - std[69d51b4813ba037]::panic::catch_unwind::::{closure#1}::{closure#0}>, ()> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panic.rs:359:14 [INFO] [stdout] 46: 0x61bb322fbe62 - std[69d51b4813ba037]::thread::lifecycle::spawn_unchecked::::{closure#1} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/thread/lifecycle.rs:89:26 [INFO] [stdout] 47: 0x61bb322fbe62 - ::{closure#1} as core[51d4adbef590f61]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 48: 0x61bb32381bdf - + core[51d4adbef590f61]::marker::Send> as core[51d4adbef590f61]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/alloc/src/boxed.rs:2240:9 [INFO] [stdout] 49: 0x61bb32381bdf - ::new::thread_start [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/thread/unix.rs:118:17 [INFO] [stdout] 50: 0x70b1b7d3aaa4 - [INFO] [stdout] 51: 0x70b1b7dc7a64 - clone [INFO] [stdout] 52: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- test_raw_inputs_profile_with_sketch stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'test_raw_inputs_profile_with_sketch' (34) panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/assert_cmd-1.0.8/src/assert.rs:124:9: [INFO] [stdout] Unexpected failure. [INFO] [stdout] code-1 [INFO] [stdout] stderr=```"2026-03-06T21:56:55.608Z INFO [sylph::sketch] Sketching paired sequences...\n2026-03-06T21:56:55.622Z ERROR [sylph::sketch] Could not create directory at ./tests/results/test_sketch_dir\n"``` [INFO] [stdout] command=`"/opt/rustwide/target/debug/sylph" "sketch" "-1" "test_files/k12_R1.fq" "-2" "test_files/k12_R2.fq" "-d" "./tests/results/test_sketch_dir"` [INFO] [stdout] code=1 [INFO] [stdout] stdout=```""``` [INFO] [stdout] stderr=```"2026-03-06T21:56:55.608Z INFO [sylph::sketch] Sketching paired sequences...\n2026-03-06T21:56:55.622Z ERROR [sylph::sketch] Could not create directory at ./tests/results/test_sketch_dir\n"``` [INFO] [stdout] [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x61bb3238237a - std[69d51b4813ba037]::backtrace_rs::backtrace::libunwind::trace [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stdout] 1: 0x61bb3238237a - std[69d51b4813ba037]::backtrace_rs::backtrace::trace_unsynchronized:: [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stdout] 2: 0x61bb3238237a - std[69d51b4813ba037]::sys::backtrace::_print_fmt [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:74:9 [INFO] [stdout] 3: 0x61bb3238237a - <::print::DisplayBacktrace as core[51d4adbef590f61]::fmt::Display>::fmt [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:44:26 [INFO] [stdout] 4: 0x61bb32397dba - ::fmt [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/fmt/rt.rs:152:76 [INFO] [stdout] 5: 0x61bb32397dba - core[51d4adbef590f61]::fmt::write [INFO] [stdout] 6: 0x61bb32387f22 - std[69d51b4813ba037]::io::default_write_fmt::> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/io/mod.rs:639:11 [INFO] [stdout] 7: 0x61bb32387f22 - as std[69d51b4813ba037]::io::Write>::write_fmt [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/io/mod.rs:1994:13 [INFO] [stdout] 8: 0x61bb32360d8f - ::print [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:47:9 [INFO] [stdout] 9: 0x61bb32360d8f - std[69d51b4813ba037]::panicking::default_hook::{closure#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:292:27 [INFO] [stdout] 10: 0x61bb3237a739 - std[69d51b4813ba037]::panicking::default_hook [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:316:9 [INFO] [stdout] 11: 0x61bb322f878c - core[51d4adbef590f61]::ops::function::Fn<(&'a std[69d51b4813ba037]::panic::PanicHookInfo<'b>,), Output = ()> + core[51d4adbef590f61]::marker::Sync + core[51d4adbef590f61]::marker::Send> as core[51d4adbef590f61]::ops::function::Fn<(&std[69d51b4813ba037]::panic::PanicHookInfo,)>>::call [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/alloc/src/boxed.rs:2254:9 [INFO] [stdout] 12: 0x61bb322f878c - test[8fe65b9e05bf4c74]::test_main_with_exit_callback::::{closure#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/test/src/lib.rs:145:21 [INFO] [stdout] 13: 0x61bb3237a8f2 - core[51d4adbef590f61]::ops::function::Fn<(&'a std[69d51b4813ba037]::panic::PanicHookInfo<'b>,), Output = ()> + core[51d4adbef590f61]::marker::Sync + core[51d4adbef590f61]::marker::Send> as core[51d4adbef590f61]::ops::function::Fn<(&std[69d51b4813ba037]::panic::PanicHookInfo,)>>::call [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/alloc/src/boxed.rs:2254:9 [INFO] [stdout] 14: 0x61bb3237a8f2 - std[69d51b4813ba037]::panicking::panic_with_hook [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:833:13 [INFO] [stdout] 15: 0x61bb32360e48 - std[69d51b4813ba037]::panicking::panic_handler::{closure#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:698:13 [INFO] [stdout] 16: 0x61bb323587e9 - std[69d51b4813ba037]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:182:18 [INFO] [stdout] 17: 0x61bb32361b5d - __rustc[cb16bc19fc993bd7]::rust_begin_unwind [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:689:5 [INFO] [stdout] 18: 0x61bb3239865c - core[51d4adbef590f61]::panicking::panic_fmt [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/panicking.rs:80:14 [INFO] [stdout] 19: 0x61bb32341da8 - core[51d4adbef590f61]::panicking::panic_display:: [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/panicking.rs:259:5 [INFO] [stdout] 20: 0x61bb32341da8 - ::panic:: [INFO] [stdout] at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/assert_cmd-1.0.8/src/assert.rs:124:9 [INFO] [stdout] 21: 0x61bb32342926 - <::panic as core[51d4adbef590f61]::ops::function::FnOnce<(assert_cmd[1030f3e45aef8ea]::assert::AssertError,)>>::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 22: 0x61bb32342926 - >::unwrap_or_else::<::panic> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/result.rs:1622:23 [INFO] [stdout] 23: 0x61bb32342926 - ::success [INFO] [stdout] at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/assert_cmd-1.0.8/src/assert.rs:249:28 [INFO] [stdout] 24: 0x61bb322e9029 - integration_test[87207cc6d35b2ef0]::test_raw_inputs_profile_with_sketch::{closure#0} [INFO] [stdout] at /opt/rustwide/workdir/tests/integration_test.rs:536:12 [INFO] [stdout] 25: 0x61bb322e9029 - >::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 26: 0x61bb3232b56a - serial_test[51829e4c51456ab1]::serial_code_lock::local_serial_core [INFO] [stdout] at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/serial_test-3.1.1/src/serial_code_lock.rs:36:5 [INFO] [stdout] 27: 0x61bb322df86d - integration_test[87207cc6d35b2ef0]::test_raw_inputs_profile_with_sketch [INFO] [stdout] at /opt/rustwide/workdir/tests/integration_test.rs:510:1 [INFO] [stdout] 28: 0x61bb322df86d - integration_test[87207cc6d35b2ef0]::test_raw_inputs_profile_with_sketch::{closure#0} [INFO] [stdout] at /opt/rustwide/workdir/tests/integration_test.rs:510:10 [INFO] [stdout] 29: 0x61bb322df86d - >::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 30: 0x61bb322ec86b - core[51d4adbef590f61]::result::Result<(), alloc[18203fec9a0cd4ec]::string::String> as core[51d4adbef590f61]::ops::function::FnOnce<()>>::call_once [INFO] [stderr] error: test failed, to rerun pass `--test integration_test` [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 31: 0x61bb322ec86b - test[8fe65b9e05bf4c74]::__rust_begin_short_backtrace::, fn() -> core[51d4adbef590f61]::result::Result<(), alloc[18203fec9a0cd4ec]::string::String>> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/test/src/lib.rs:663:18 [INFO] [stdout] 32: 0x61bb322f925b - test[8fe65b9e05bf4c74]::run_test_in_process::{closure#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/test/src/lib.rs:686:74 [INFO] [stdout] 33: 0x61bb322f925b - as core[51d4adbef590f61]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/panic/unwind_safe.rs:274:9 [INFO] [stdout] 34: 0x61bb322f925b - std[69d51b4813ba037]::panicking::catch_unwind::do_call::, core[51d4adbef590f61]::result::Result<(), alloc[18203fec9a0cd4ec]::string::String>> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:581:40 [INFO] [stdout] 35: 0x61bb322f925b - std[69d51b4813ba037]::panicking::catch_unwind::, core[51d4adbef590f61]::panic::unwind_safe::AssertUnwindSafe> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:544:19 [INFO] [stdout] 36: 0x61bb322f925b - std[69d51b4813ba037]::panic::catch_unwind::, core[51d4adbef590f61]::result::Result<(), alloc[18203fec9a0cd4ec]::string::String>> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panic.rs:359:14 [INFO] [stdout] 37: 0x61bb322f925b - test[8fe65b9e05bf4c74]::run_test_in_process [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/test/src/lib.rs:686:27 [INFO] [stdout] 38: 0x61bb322f925b - test[8fe65b9e05bf4c74]::run_test::{closure#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/test/src/lib.rs:607:43 [INFO] [stdout] 39: 0x61bb322f4974 - test[8fe65b9e05bf4c74]::run_test::{closure#1} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/test/src/lib.rs:637:41 [INFO] [stdout] 40: 0x61bb322f4974 - std[69d51b4813ba037]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/backtrace.rs:166:18 [INFO] [stdout] 41: 0x61bb322fbe62 - std[69d51b4813ba037]::thread::lifecycle::spawn_unchecked::::{closure#1}::{closure#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/thread/lifecycle.rs:91:13 [INFO] [stdout] 42: 0x61bb322fbe62 - ::{closure#1}::{closure#0}> as core[51d4adbef590f61]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/panic/unwind_safe.rs:274:9 [INFO] [stdout] 43: 0x61bb322fbe62 - std[69d51b4813ba037]::panicking::catch_unwind::do_call::::{closure#1}::{closure#0}>, ()> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:581:40 [INFO] [stdout] 44: 0x61bb322fbe62 - std[69d51b4813ba037]::panicking::catch_unwind::<(), core[51d4adbef590f61]::panic::unwind_safe::AssertUnwindSafe::{closure#1}::{closure#0}>> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panicking.rs:544:19 [INFO] [stdout] 45: 0x61bb322fbe62 - std[69d51b4813ba037]::panic::catch_unwind::::{closure#1}::{closure#0}>, ()> [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/panic.rs:359:14 [INFO] [stdout] 46: 0x61bb322fbe62 - std[69d51b4813ba037]::thread::lifecycle::spawn_unchecked::::{closure#1} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/thread/lifecycle.rs:89:26 [INFO] [stdout] 47: 0x61bb322fbe62 - ::{closure#1} as core[51d4adbef590f61]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 48: 0x61bb32381bdf - + core[51d4adbef590f61]::marker::Send> as core[51d4adbef590f61]::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/alloc/src/boxed.rs:2240:9 [INFO] [stdout] 49: 0x61bb32381bdf - ::new::thread_start [INFO] [stdout] at /rustc/d933cf483edf1605142ac6899ff32536c0ad8b22/library/std/src/sys/thread/unix.rs:118:17 [INFO] [stdout] 50: 0x70b1b7d3aaa4 - [INFO] [stdout] 51: 0x70b1b7dc7a64 - clone [INFO] [stdout] 52: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] test_fpr [INFO] [stdout] test_inspect [INFO] [stdout] test_profile_disabling [INFO] [stdout] test_raw_inputs_profile_with_sketch [INFO] [stdout] test_sample_names [INFO] [stdout] test_sketch_commands [INFO] [stdout] test_sketch_fasta_fastq_concord [INFO] [stdout] test_sketch_list [INFO] [stdout] [INFO] [stdout] test result: FAILED. 3 passed; 8 failed; 0 ignored; 0 measured; 0 filtered out; finished in 2.25s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "1c9a441155d5c06f6254c91471efc62aec959f1571ca9fa3c99ca5a4d8725538", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1c9a441155d5c06f6254c91471efc62aec959f1571ca9fa3c99ca5a4d8725538", kill_on_drop: false }` [INFO] [stdout] 1c9a441155d5c06f6254c91471efc62aec959f1571ca9fa3c99ca5a4d8725538