[INFO] cloning repository https://github.com/Joon-Klaps/rust-python-tree-distances [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Joon-Klaps/rust-python-tree-distances" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FJoon-Klaps%2Frust-python-tree-distances", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FJoon-Klaps%2Frust-python-tree-distances'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 9ad76ca981b804de14fa0a468b44a1268503c9f7 [INFO] testing Joon-Klaps/rust-python-tree-distances against master#d933cf483edf1605142ac6899ff32536c0ad8b22 for pr-150933 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FJoon-Klaps%2Frust-python-tree-distances" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/Joon-Klaps/rust-python-tree-distances [INFO] finished tweaking git repo https://github.com/Joon-Klaps/rust-python-tree-distances [INFO] tweaked toml for git repo https://github.com/Joon-Klaps/rust-python-tree-distances written to /workspace/builds/worker-5-tc1/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/Joon-Klaps/rust-python-tree-distances on toolchain d933cf483edf1605142ac6899ff32536c0ad8b22 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d933cf483edf1605142ac6899ff32536c0ad8b22" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d933cf483edf1605142ac6899ff32536c0ad8b22" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Locking 186 packages to latest Rust 1.96.0-nightly compatible versions [INFO] [stderr] Adding criterion v0.7.0 (available: v0.8.2) [INFO] [stderr] Adding pyo3 v0.27.2 (available: v0.28.2) [INFO] [stderr] Adding rand v0.9.2 (available: v0.10.0) [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d933cf483edf1605142ac6899ff32536c0ad8b22" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded pyo3-macros v0.27.2 [INFO] [stderr] Downloaded pyo3-build-config v0.27.2 [INFO] [stderr] Downloaded trait-set v0.3.0 [INFO] [stderr] Downloaded utf8-read v0.4.0 [INFO] [stderr] Downloaded target-lexicon v0.13.5 [INFO] [stderr] Downloaded cpu-time v1.0.0 [INFO] [stderr] Downloaded memory-stats v1.2.0 [INFO] [stderr] Downloaded criterion-plot v0.6.0 [INFO] [stderr] Downloaded tint v1.0.1 [INFO] [stderr] Downloaded ieee754 v0.2.6 [INFO] [stderr] Downloaded xz2 v0.1.7 [INFO] [stderr] Downloaded clap_complete v4.5.66 [INFO] [stderr] Downloaded needletail v0.5.1 [INFO] [stderr] Downloaded ptree v0.4.0 [INFO] [stderr] Downloaded phylotree v0.1.3 [INFO] [stderr] Downloaded criterion v0.7.0 [INFO] [stderr] Downloaded pyo3-ffi v0.27.2 [INFO] [stderr] Downloaded pyo3-macros-backend v0.27.2 [INFO] [stderr] Downloaded buffer-redux v1.1.0 [INFO] [stderr] Downloaded bytecount v0.6.9 [INFO] [stderr] Downloaded numeric_literals v0.2.0 [INFO] [stderr] Downloaded accurate v0.3.1 [INFO] [stderr] Downloaded web-sys v0.3.91 [INFO] [stderr] Downloaded lzma-sys v0.1.20 [INFO] [stderr] Downloaded pyo3 v0.27.2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:cfa559dde23f44738f9990739aaa3487d8df3af37eb5df0572f7cf76004a604a" "/opt/rustwide/cargo-home/bin/cargo" "+d933cf483edf1605142ac6899ff32536c0ad8b22" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] b537c3e8617ef319189576e734d3d697b22f20aecf67347b3e3ef3a990fb9bf7 [INFO] running `Command { std: "docker" "start" "-a" "b537c3e8617ef319189576e734d3d697b22f20aecf67347b3e3ef3a990fb9bf7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "b537c3e8617ef319189576e734d3d697b22f20aecf67347b3e3ef3a990fb9bf7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b537c3e8617ef319189576e734d3d697b22f20aecf67347b3e3ef3a990fb9bf7", kill_on_drop: false }` [INFO] [stdout] b537c3e8617ef319189576e734d3d697b22f20aecf67347b3e3ef3a990fb9bf7 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:cfa559dde23f44738f9990739aaa3487d8df3af37eb5df0572f7cf76004a604a" "/opt/rustwide/cargo-home/bin/cargo" "+d933cf483edf1605142ac6899ff32536c0ad8b22" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] f289fbc96bc12cdeeaa52be9994bbdce14ab86b870c396a7d796b7e0170f7c27 [INFO] running `Command { std: "docker" "start" "-a" "f289fbc96bc12cdeeaa52be9994bbdce14ab86b870c396a7d796b7e0170f7c27", kill_on_drop: false }` [INFO] [stderr] Compiling unicode-ident v1.0.24 [INFO] [stderr] Compiling quote v1.0.45 [INFO] [stderr] Compiling memchr v2.8.0 [INFO] [stderr] Compiling serde_core v1.0.228 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling serde_json v1.0.149 [INFO] [stderr] Compiling regex-syntax v0.8.10 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling nom v5.1.3 [INFO] [stderr] Compiling bzip2-sys v0.1.13+1.0.8 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling anstyle-query v1.1.5 [INFO] [stderr] Compiling lexical-core v0.7.6 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Compiling simd-adler32 v0.3.8 [INFO] [stderr] Compiling portable-atomic v1.13.1 [INFO] [stderr] Compiling proc-macro2 v1.0.106 [INFO] [stderr] Compiling anstream v0.6.21 [INFO] [stderr] Compiling either v1.15.0 [INFO] [stderr] Compiling clap_lex v1.0.0 [INFO] [stderr] Compiling linked-hash-map v0.5.6 [INFO] [stderr] Compiling serde v0.8.23 [INFO] [stderr] Compiling miniz_oxide v0.8.9 [INFO] [stderr] Compiling yaml-rust v0.4.5 [INFO] [stderr] Compiling dirs-sys v0.3.7 [INFO] [stderr] Compiling fixedbitset v0.4.2 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling rust-ini v0.13.0 [INFO] [stderr] Compiling clap_builder v4.5.60 [INFO] [stderr] Compiling unicode-width v0.2.2 [INFO] [stderr] Compiling lazy_static v0.2.11 [INFO] [stderr] Compiling flate2 v1.1.9 [INFO] [stderr] Compiling tint v1.0.1 [INFO] [stderr] Compiling console v0.15.11 [INFO] [stderr] Compiling petgraph v0.6.5 [INFO] [stderr] Compiling syn v2.0.117 [INFO] [stderr] Compiling aho-corasick v1.1.4 [INFO] [stderr] Compiling buffer-redux v1.1.0 [INFO] [stderr] Compiling bzip2 v0.4.4 [INFO] [stderr] Compiling rayon v1.11.0 [INFO] [stderr] Compiling directories v4.0.1 [INFO] [stderr] Compiling num-traits v0.1.43 [INFO] [stderr] Compiling ordered-float v2.10.1 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling xz2 v0.1.7 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling bytecount v0.6.9 [INFO] [stderr] Compiling number_prefix v0.4.0 [INFO] [stderr] Compiling itertools v0.10.5 [INFO] [stderr] Compiling indicatif v0.17.11 [INFO] [stderr] Compiling ndarray v0.16.1 [INFO] [stderr] Compiling utf8-read v0.4.0 [INFO] [stderr] Compiling needletail v0.5.1 [INFO] [stderr] Compiling rustc-hash v2.1.1 [INFO] [stderr] Compiling regex-automata v0.4.14 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling accurate v0.3.1 [INFO] [stderr] Compiling numeric_literals v0.2.0 [INFO] [stderr] Compiling trait-set v0.3.0 [INFO] [stderr] Compiling serde_derive v1.0.228 [INFO] [stderr] Compiling clap_derive v4.5.55 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling regex v1.12.3 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Compiling serde-hjson v0.9.1 [INFO] [stderr] Compiling clap v4.5.60 [INFO] [stderr] Compiling clap_complete v4.5.66 [INFO] [stderr] Compiling serde v1.0.228 [INFO] [stderr] Compiling toml v0.5.11 [INFO] [stderr] Compiling serde-value v0.7.0 [INFO] [stderr] Compiling tinytemplate v1.2.1 [INFO] [stderr] Compiling config v0.11.0 [INFO] [stderr] Compiling ptree v0.4.0 [INFO] [stderr] Compiling phylotree v0.1.3 [INFO] [stderr] Compiling rapidtrees v0.3.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 44.67s [INFO] running `Command { std: "docker" "inspect" "f289fbc96bc12cdeeaa52be9994bbdce14ab86b870c396a7d796b7e0170f7c27", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f289fbc96bc12cdeeaa52be9994bbdce14ab86b870c396a7d796b7e0170f7c27", kill_on_drop: false }` [INFO] [stdout] f289fbc96bc12cdeeaa52be9994bbdce14ab86b870c396a7d796b7e0170f7c27 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:cfa559dde23f44738f9990739aaa3487d8df3af37eb5df0572f7cf76004a604a" "/opt/rustwide/cargo-home/bin/cargo" "+d933cf483edf1605142ac6899ff32536c0ad8b22" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 82709e132b21ed00c87e9cc8d9c3c73be9565653eea0962ac026d806e6664066 [INFO] running `Command { std: "docker" "start" "-a" "82709e132b21ed00c87e9cc8d9c3c73be9565653eea0962ac026d806e6664066", kill_on_drop: false }` [INFO] [stderr] Compiling zerocopy v0.8.40 [INFO] [stderr] Compiling zerocopy-derive v0.8.40 [INFO] [stderr] Compiling serde_core v1.0.228 [INFO] [stderr] Compiling serde v1.0.228 [INFO] [stderr] Compiling getrandom v0.3.4 [INFO] [stderr] Compiling ciborium-io v0.2.2 [INFO] [stderr] Compiling plotters-backend v0.3.7 [INFO] [stderr] Compiling itertools v0.13.0 [INFO] [stderr] Compiling cast v0.3.0 [INFO] [stderr] Compiling walkdir v2.5.0 [INFO] [stderr] Compiling oorandom v11.1.5 [INFO] [stderr] Compiling anes v0.1.6 [INFO] [stderr] Compiling itertools v0.14.0 [INFO] [stderr] Compiling cpu-time v1.0.0 [INFO] [stderr] Compiling memory-stats v1.2.0 [INFO] [stderr] Compiling plotters-svg v0.3.7 [INFO] [stderr] Compiling plotters v0.3.7 [INFO] [stderr] Compiling rand_core v0.9.5 [INFO] [stderr] Compiling criterion-plot v0.6.0 [INFO] [stderr] Compiling serde_json v1.0.149 [INFO] [stderr] Compiling toml v0.5.11 [INFO] [stderr] Compiling serde-value v0.7.0 [INFO] [stderr] Compiling tinytemplate v1.2.1 [INFO] [stderr] Compiling config v0.11.0 [INFO] [stderr] Compiling ptree v0.4.0 [INFO] [stderr] Compiling ppv-lite86 v0.2.21 [INFO] [stderr] Compiling half v2.7.1 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling rand_chacha v0.9.0 [INFO] [stderr] Compiling ciborium-ll v0.2.2 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling rand v0.9.2 [INFO] [stderr] Compiling ciborium v0.2.2 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling criterion v0.7.0 [INFO] [stderr] Compiling phylotree v0.1.3 [INFO] [stderr] Compiling rapidtrees v0.3.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 22.76s [INFO] running `Command { std: "docker" "inspect" "82709e132b21ed00c87e9cc8d9c3c73be9565653eea0962ac026d806e6664066", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "82709e132b21ed00c87e9cc8d9c3c73be9565653eea0962ac026d806e6664066", kill_on_drop: false }` [INFO] [stdout] 82709e132b21ed00c87e9cc8d9c3c73be9565653eea0962ac026d806e6664066 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:cfa559dde23f44738f9990739aaa3487d8df3af37eb5df0572f7cf76004a604a" "/opt/rustwide/cargo-home/bin/cargo" "+d933cf483edf1605142ac6899ff32536c0ad8b22" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] ff68a8e28605f098d499a275b7917647effc10f401487a19e85ee95c8fcad9fa [INFO] running `Command { std: "docker" "start" "-a" "ff68a8e28605f098d499a275b7917647effc10f401487a19e85ee95c8fcad9fa", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.25s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/rapidtrees-c2da5403dca00d71) [INFO] [stdout] [INFO] [stdout] running 16 tests [INFO] [stdout] test bitset::tests::test_bitset_or ... ok [INFO] [stdout] test bitset::tests::test_bitset_basic ... ok [INFO] [stdout] test bitset::tests::test_count_ones ... ok [INFO] [stdout] test bitset::tests::test_mini_tree_example ... ok [INFO] [stdout] test bitset::tests::test_large_tree ... ok [INFO] [stdout] test snapshot::tests::test_depth3_tree_partitions ... ok [INFO] [stdout] test snapshot::tests::test_root_bipartition_dedup ... ok [INFO] [stdout] test snapshot::tests::test_taxon_names_vs_node_ids ... ok [INFO] [stdout] test snapshot::tests::test_rooted_vs_unrooted_partitions ... ok [INFO] [stdout] test snapshot::tests::test_canonicalization ... ok [INFO] [stdout] test snapshot::tests::test_snapshot_concept ... ok [INFO] [stdout] test snapshot::tests::test_asymmetric_tree_example ... ok [INFO] [stdout] test snapshot::tests::test_consistent_leaf_ordering ... ok [INFO] [stdout] test distances::robinson_foulds_treedist ... ok [INFO] [stdout] test distances::weighted_robinson_foulds_treedist ... ok [INFO] [stdout] test distances::kuhner_felsenstein_treedist ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 16 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.06s [INFO] [stdout] [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/rapidtrees-97d291b56acd11b0) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests rapidtrees [INFO] [stdout] [INFO] [stdout] running 4 tests [INFO] [stdout] test src/bitset.rs - bitset::Bitset::set (line 48) ... ok [INFO] [stdout] test src/bitset.rs - bitset::Bitset::count_ones (line 90) ... ok [INFO] [stdout] test src/bitset.rs - bitset::Bitset::or_assign (line 67) ... ok [INFO] [stdout] test src/bitset.rs - bitset::Bitset::zeros (line 30) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.05s [INFO] [stdout] [INFO] [stdout] all doctests ran in 0.93s; merged doctests compilation took 0.86s [INFO] running `Command { std: "docker" "inspect" "ff68a8e28605f098d499a275b7917647effc10f401487a19e85ee95c8fcad9fa", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ff68a8e28605f098d499a275b7917647effc10f401487a19e85ee95c8fcad9fa", kill_on_drop: false }` [INFO] [stdout] ff68a8e28605f098d499a275b7917647effc10f401487a19e85ee95c8fcad9fa