[INFO] cloning repository https://github.com/codebiogenomics/minifySeq
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/codebiogenomics/minifySeq" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fcodebiogenomics%2FminifySeq", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fcodebiogenomics%2FminifySeq'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 0b75e9dcb7dc20465a82f56cf509db6ba50a72b3
[INFO] checking codebiogenomics/minifySeq/0b75e9dcb7dc20465a82f56cf509db6ba50a72b3 against master#bca37a20bd376ce3fd138e7cdee7fe704e0f8814 for pr-150727
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fcodebiogenomics%2FminifySeq" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/codebiogenomics/minifySeq
[INFO] finished tweaking git repo https://github.com/codebiogenomics/minifySeq
[INFO] tweaked toml for git repo https://github.com/codebiogenomics/minifySeq written to /workspace/builds/worker-2-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/codebiogenomics/minifySeq on toolchain bca37a20bd376ce3fd138e7cdee7fe704e0f8814
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+bca37a20bd376ce3fd138e7cdee7fe704e0f8814" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/codebiogenomics/minifySeq already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+bca37a20bd376ce3fd138e7cdee7fe704e0f8814" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded clang-sys v0.22.0
[INFO] [stderr]   Downloaded xgboost v0.1.4
[INFO] [stderr]   Downloaded half v2.7.0
[INFO] [stderr]   Downloaded format_num v0.1.0
[INFO] [stderr]   Downloaded derive_builder_core v0.2.0
[INFO] [stderr]   Downloaded svg v0.7.2
[INFO] [stderr]   Downloaded derive_builder v0.5.1
[INFO] [stderr]   Downloaded charts v0.3.0
[INFO] [stderr]   Downloaded clap v4.5.42
[INFO] [stderr]   Downloaded linfa v0.8.0
[INFO] [stderr]   Downloaded clap_builder v4.5.42
[INFO] [stderr]   Downloaded bindgen v0.36.1
[INFO] [stderr]   Downloaded torch-sys v0.20.0
[INFO] [stderr]   Downloaded xgboost-sys v0.1.2
[INFO] [stderr]   Downloaded tch v0.20.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:aa71247004a7fa38d13ec170f48f06cdedf5bc50b2a8645e56ed7e992e6fa513" "/opt/rustwide/cargo-home/bin/cargo" "+bca37a20bd376ce3fd138e7cdee7fe704e0f8814" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 045b1940c18a0eabf377bd4715f02e845ef38002d3b45696983dc64dfd26e8f1
[INFO] running `Command { std: "docker" "start" "-a" "045b1940c18a0eabf377bd4715f02e845ef38002d3b45696983dc64dfd26e8f1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "045b1940c18a0eabf377bd4715f02e845ef38002d3b45696983dc64dfd26e8f1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "045b1940c18a0eabf377bd4715f02e845ef38002d3b45696983dc64dfd26e8f1", kill_on_drop: false }`
[INFO] [stdout] 045b1940c18a0eabf377bd4715f02e845ef38002d3b45696983dc64dfd26e8f1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:aa71247004a7fa38d13ec170f48f06cdedf5bc50b2a8645e56ed7e992e6fa513" "/opt/rustwide/cargo-home/bin/cargo" "+bca37a20bd376ce3fd138e7cdee7fe704e0f8814" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] b16fe196b7d4079fffb5221843ecc794c04e38c64a0b3389d1573f988239f2fb
[INFO] running `Command { std: "docker" "start" "-a" "b16fe196b7d4079fffb5221843ecc794c04e38c64a0b3389d1573f988239f2fb", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.174
[INFO] [stderr]    Compiling glob v0.2.11
[INFO] [stderr]    Compiling simd-adler32 v0.3.7
[INFO] [stderr]    Compiling adler2 v2.0.1
[INFO] [stderr]    Compiling base64ct v1.8.0
[INFO] [stderr]    Compiling regex-syntax v0.8.6
[INFO] [stderr]    Compiling generic-array v0.14.7
[INFO] [stderr]    Compiling syn v2.0.104
[INFO] [stderr]    Compiling deranged v0.5.4
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking event-listener v5.4.1
[INFO] [stderr]    Compiling crc32fast v1.5.0
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling time-core v0.1.6
[INFO] [stderr]    Compiling regex v0.2.11
[INFO] [stderr]    Compiling ucd-util v0.1.10
[INFO] [stderr]    Compiling humantime v1.3.0
[INFO] [stderr]    Compiling anyhow v1.0.100
[INFO] [stderr]     Checking rustix v1.0.8
[INFO] [stderr]    Compiling miniz_oxide v0.8.9
[INFO] [stderr]     Checking event-listener-strategy v0.5.4
[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling password-hash v0.4.2
[INFO] [stderr]    Compiling regex-syntax v0.5.6
[INFO] [stderr]    Compiling proc-macro2 v0.3.5
[INFO] [stderr]    Compiling thread_local v0.3.6
[INFO] [stderr]     Checking crypto-common v0.1.6
[INFO] [stderr]     Checking block-buffer v0.10.4
[INFO] [stderr]    Compiling clang-sys v0.22.0
[INFO] [stderr]    Compiling aho-corasick v0.6.10
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
[INFO] [stderr]    Compiling inout v0.1.4
[INFO] [stderr]     Checking digest v0.10.7
[INFO] [stderr]    Compiling flate2 v1.1.4
[INFO] [stderr]    Compiling constant_time_eq v0.1.5
[INFO] [stderr]    Compiling ansi_term v0.12.1
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling cipher v0.4.4
[INFO] [stderr]    Compiling utf8-ranges v1.0.5
[INFO] [stderr]    Compiling log v0.4.27
[INFO] [stderr]    Compiling strsim v0.8.0
[INFO] [stderr]    Compiling bindgen v0.36.1
[INFO] [stderr]    Compiling quote v0.5.2
[INFO] [stderr]    Compiling hmac v0.12.1
[INFO] [stderr]    Compiling sha2 v0.10.9
[INFO] [stderr]    Compiling sha1 v0.10.6
[INFO] [stderr]    Compiling aes v0.8.4
[INFO] [stderr]     Checking futures-lite v2.6.1
[INFO] [stderr]    Compiling peeking_take_while v0.1.2
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking value-bag v1.11.1
[INFO] [stderr]     Checking regex-automata v0.4.11
[INFO] [stderr]    Compiling jobserver v0.1.34
[INFO] [stderr]    Compiling memchr v1.0.2
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling nom v3.2.1
[INFO] [stderr]    Compiling pbkdf2 v0.11.0
[INFO] [stderr]    Compiling clap v2.34.0
[INFO] [stderr]    Compiling which v1.0.5
[INFO] [stderr]     Checking ndarray v0.16.1
[INFO] [stderr]    Compiling cc v1.2.41
[INFO] [stderr]    Compiling time v0.3.44
[INFO] [stderr]     Checking async-channel v2.5.0
[INFO] [stderr]     Checking async-lock v3.4.1
[INFO] [stderr]    Compiling derive_builder v0.5.1
[INFO] [stderr]     Checking serde_json v1.0.145
[INFO] [stderr]     Checking async-executor v1.13.2
[INFO] [stderr]     Checking blocking v1.6.2
[INFO] [stderr]    Compiling cexpr v0.2.3
[INFO] [stderr]    Compiling derive_builder_core v0.2.0
[INFO] [stderr]     Checking getrandom v0.3.3
[INFO] [stderr]    Compiling tch v0.20.0
[INFO] [stderr]    Compiling linfa v0.8.0
[INFO] [stderr]     Checking clap_builder v4.5.42
[INFO] [stderr]     Checking kv-log-macro v1.0.7
[INFO] [stderr]     Checking svg v0.7.2
[INFO] [stderr]     Checking regex v1.11.3
[INFO] [stderr]    Compiling zstd-sys v2.0.16+zstd.1.5.7
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling libloading v0.5.2
[INFO] [stderr]     Checking format_num v0.1.0
[INFO] [stderr]     Checking charts v0.3.0
[INFO] [stderr]    Compiling zerocopy-derive v0.8.27
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling thiserror-impl v2.0.17
[INFO] [stderr]    Compiling tokio-macros v2.5.0
[INFO] [stderr]    Compiling clap_derive v4.5.41
[INFO] [stderr]     Checking polling v3.10.0
[INFO] [stderr]    Compiling bzip2 v0.4.4
[INFO] [stderr]     Checking tempfile v3.23.0
[INFO] [stderr]     Checking async-io v2.5.0
[INFO] [stderr]     Checking tokio v1.47.1
[INFO] [stderr]     Checking async-global-executor v2.4.1
[INFO] [stderr]     Checking async-std v1.13.1
[INFO] [stderr]     Checking zerocopy v0.8.27
[INFO] [stderr]     Checking thiserror v2.0.17
[INFO] [stderr]     Checking thiserror v1.0.69
[INFO] [stderr]     Checking sprs v0.11.3
[INFO] [stderr]     Checking clap v4.5.42
[INFO] [stderr]     Checking serde v1.0.228
[INFO] [stderr]    Compiling env_logger v0.5.13
[INFO] [stderr]     Checking ppv-lite86 v0.2.21
[INFO] [stderr]     Checking half v2.7.0
[INFO] [stderr]     Checking safetensors v0.3.3
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]    Compiling zstd-safe v5.0.2+zstd.1.5.2
[INFO] [stderr]    Compiling zstd v0.11.2+zstd.1.5.2
[INFO] [stderr]    Compiling zip v0.6.6
[INFO] [stderr]    Compiling xgboost-sys v0.1.2
[INFO] [stderr]    Compiling torch-sys v0.20.0
[INFO] [stderr] error: failed to run custom build command for `torch-sys v0.20.0`
[INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation.
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/torch-sys-a0da9d9516f2a75a/build-script-build` (exit status: 1)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   cargo:rerun-if-env-changed=LIBTORCH_USE_PYTORCH
[INFO] [stderr]   cargo:rerun-if-env-changed=LIBTORCH
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   Error: 
[INFO] [stderr]   Cannot find a libtorch install, you can either:
[INFO] [stderr]   - Install libtorch manually and set the LIBTORCH environment variable to appropriate path.
[INFO] [stderr]   - Use a system wide install in /usr/lib/libtorch.so.
[INFO] [stderr]   - Use a Python environment with PyTorch installed by setting LIBTORCH_USE_PYTORCH=1
[INFO] [stderr] 
[INFO] [stderr]   See the readme for more details:
[INFO] [stderr]   https://github.com/LaurentMazare/tch-rs/blob/main/README.md
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr]   Stack backtrace:
[INFO] [stderr]      0: <anyhow::kind::Adhoc>::new::<&str>
[INFO] [stderr]      1: <build_script_build::SystemInfo>::prepare_libtorch_dir
[INFO] [stderr]      2: <build_script_build::SystemInfo>::new
[INFO] [stderr]      3: build_script_build::main
[INFO] [stderr]      4: <fn() -> core::result::Result<(), anyhow::Error> as core::ops::function::FnOnce<()>>::call_once
[INFO] [stderr]      5: std::sys::backtrace::__rust_begin_short_backtrace::<fn() -> core::result::Result<(), anyhow::Error>, core::result::Result<(), anyhow::Error>>
[INFO] [stderr]      6: std::rt::lang_start::<core::result::Result<(), anyhow::Error>>::{closure#0}
[INFO] [stderr]      7: <&dyn core::ops::function::Fn<(), Output = i32> + core::panic::unwind_safe::RefUnwindSafe + core::marker::Sync as core::ops::function::FnOnce<()>>::call_once
[INFO] [stderr]                at /rustc/bca37a20bd376ce3fd138e7cdee7fe704e0f8814/library/core/src/ops/function.rs:287:21
[INFO] [stderr]      8: std::panicking::catch_unwind::do_call::<&dyn core::ops::function::Fn<(), Output = i32> + core::panic::unwind_safe::RefUnwindSafe + core::marker::Sync, i32>
[INFO] [stderr]                at /rustc/bca37a20bd376ce3fd138e7cdee7fe704e0f8814/library/std/src/panicking.rs:581:40
[INFO] [stderr]      9: std::panicking::catch_unwind::<i32, &dyn core::ops::function::Fn<(), Output = i32> + core::panic::unwind_safe::RefUnwindSafe + core::marker::Sync>
[INFO] [stderr]                at /rustc/bca37a20bd376ce3fd138e7cdee7fe704e0f8814/library/std/src/panicking.rs:544:19
[INFO] [stderr]     10: std::panic::catch_unwind::<&dyn core::ops::function::Fn<(), Output = i32> + core::panic::unwind_safe::RefUnwindSafe + core::marker::Sync, i32>
[INFO] [stderr]                at /rustc/bca37a20bd376ce3fd138e7cdee7fe704e0f8814/library/std/src/panic.rs:359:14
[INFO] [stderr]     11: std::rt::lang_start_internal::{closure#0}
[INFO] [stderr]                at /rustc/bca37a20bd376ce3fd138e7cdee7fe704e0f8814/library/std/src/rt.rs:175:24
[INFO] [stderr]     12: std::panicking::catch_unwind::do_call::<std::rt::lang_start_internal::{closure#0}, isize>
[INFO] [stderr]                at /rustc/bca37a20bd376ce3fd138e7cdee7fe704e0f8814/library/std/src/panicking.rs:581:40
[INFO] [stderr]     13: std::panicking::catch_unwind::<isize, std::rt::lang_start_internal::{closure#0}>
[INFO] [stderr]                at /rustc/bca37a20bd376ce3fd138e7cdee7fe704e0f8814/library/std/src/panicking.rs:544:19
[INFO] [stderr]     14: std::panic::catch_unwind::<std::rt::lang_start_internal::{closure#0}, isize>
[INFO] [stderr]                at /rustc/bca37a20bd376ce3fd138e7cdee7fe704e0f8814/library/std/src/panic.rs:359:14
[INFO] [stderr]     15: std::rt::lang_start_internal
[INFO] [stderr]                at /rustc/bca37a20bd376ce3fd138e7cdee7fe704e0f8814/library/std/src/rt.rs:171:5
[INFO] [stderr]     16: std::rt::lang_start::<core::result::Result<(), anyhow::Error>>
[INFO] [stderr]     17: main
[INFO] [stderr]     18: <unknown>
[INFO] [stderr]     19: __libc_start_main
[INFO] [stderr]     20: _start
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] running `Command { std: "docker" "inspect" "b16fe196b7d4079fffb5221843ecc794c04e38c64a0b3389d1573f988239f2fb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b16fe196b7d4079fffb5221843ecc794c04e38c64a0b3389d1573f988239f2fb", kill_on_drop: false }`
[INFO] [stdout] b16fe196b7d4079fffb5221843ecc794c04e38c64a0b3389d1573f988239f2fb