[INFO] cloning repository https://github.com/8051Enthusiast/biodiff
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/8051Enthusiast/biodiff" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F8051Enthusiast%2Fbiodiff", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F8051Enthusiast%2Fbiodiff'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 7df6377aa2d260e7bb754f51f0c2f9bc601fc768
[INFO] checking 8051Enthusiast/biodiff against master#bca37a20bd376ce3fd138e7cdee7fe704e0f8814 for pr-150727
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F8051Enthusiast%2Fbiodiff" "/workspace/builds/worker-1-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/8051Enthusiast/biodiff
[INFO] finished tweaking git repo https://github.com/8051Enthusiast/biodiff
[INFO] tweaked toml for git repo https://github.com/8051Enthusiast/biodiff written to /workspace/builds/worker-1-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/8051Enthusiast/biodiff on toolchain bca37a20bd376ce3fd138e7cdee7fe704e0f8814
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+bca37a20bd376ce3fd138e7cdee7fe704e0f8814" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/8051Enthusiast/biodiff already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+bca37a20bd376ce3fd138e7cdee7fe704e0f8814" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded os_pipe v1.1.5
[INFO] [stderr]   Downloaded snapbox-macros v0.3.8
[INFO] [stderr]   Downloaded fastrand v2.0.2
[INFO] [stderr]   Downloaded dunce v1.0.4
[INFO] [stderr]   Downloaded trycmd v0.15.1
[INFO] [stderr]   Downloaded multimap v0.9.1
[INFO] [stderr]   Downloaded semver v0.1.20
[INFO] [stderr]   Downloaded custom_derive v0.1.7
[INFO] [stderr]   Downloaded cursive_buffered_backend v0.6.1
[INFO] [stderr]   Downloaded content_inspector v0.2.4
[INFO] [stderr]   Downloaded enumset_derive v0.8.1
[INFO] [stderr]   Downloaded primal-check v0.3.3
[INFO] [stderr]   Downloaded bytecount v0.6.7
[INFO] [stderr]   Downloaded ordered-float v3.9.2
[INFO] [stderr]   Downloaded num v0.4.1
[INFO] [stderr]   Downloaded humantime-serde v1.1.1
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded snapbox v0.5.9
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded simba v0.6.0
[INFO] [stderr]   Downloaded statrs v0.16.0
[INFO] [stderr]   Downloaded time v0.3.35
[INFO] [stderr]   Downloaded winnow v0.6.6
[INFO] [stderr]   Downloaded cursive v0.20.0
[INFO] [stderr]   Downloaded ndarray v0.15.6
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded nalgebra v0.29.0
[INFO] [stderr]   Downloaded bio v1.6.0
[INFO] [stderr]   Downloaded bio-types v1.0.1
[INFO] [stderr]   Downloaded enumset v1.1.3
[INFO] [stderr]   Downloaded rustix v0.38.32
[INFO] [stderr]   Downloaded cursive_core v0.3.7
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:aa71247004a7fa38d13ec170f48f06cdedf5bc50b2a8645e56ed7e992e6fa513" "/opt/rustwide/cargo-home/bin/cargo" "+bca37a20bd376ce3fd138e7cdee7fe704e0f8814" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 0b61b14354bfc6179b7afad1e8983219ab57f6ebeda897fe07061c066cb7f3ff
[INFO] running `Command { std: "docker" "start" "-a" "0b61b14354bfc6179b7afad1e8983219ab57f6ebeda897fe07061c066cb7f3ff", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "0b61b14354bfc6179b7afad1e8983219ab57f6ebeda897fe07061c066cb7f3ff", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0b61b14354bfc6179b7afad1e8983219ab57f6ebeda897fe07061c066cb7f3ff", kill_on_drop: false }`
[INFO] [stdout] 0b61b14354bfc6179b7afad1e8983219ab57f6ebeda897fe07061c066cb7f3ff
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:aa71247004a7fa38d13ec170f48f06cdedf5bc50b2a8645e56ed7e992e6fa513" "/opt/rustwide/cargo-home/bin/cargo" "+bca37a20bd376ce3fd138e7cdee7fe704e0f8814" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 5a50b7eec4a0aabc9a2e36c4b927fe56f176248b2eed6123b0b41ed27e5a772c
[INFO] running `Command { std: "docker" "start" "-a" "5a50b7eec4a0aabc9a2e36c4b927fe56f176248b2eed6123b0b41ed27e5a772c", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.153
[INFO] [stderr]    Compiling syn v2.0.58
[INFO] [stderr]    Compiling libm v0.2.8
[INFO] [stderr]    Compiling num-traits v0.2.18
[INFO] [stderr]     Checking memchr v2.7.2
[INFO] [stderr]    Compiling serde v1.0.197
[INFO] [stderr]    Compiling num-rational v0.4.1
[INFO] [stderr]    Compiling matrixmultiply v0.3.8
[INFO] [stderr]    Compiling cc v1.0.92
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]     Checking aho-corasick v1.1.3
[INFO] [stderr]    Compiling rustversion v1.0.15
[INFO] [stderr]     Checking anstyle-parse v0.2.3
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking either v1.10.0
[INFO] [stderr]     Checking anstyle v1.0.6
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]     Checking regex-automata v0.4.6
[INFO] [stderr]     Checking colorchoice v1.0.0
[INFO] [stderr]    Compiling thiserror v1.0.58
[INFO] [stderr]     Checking anstyle-query v1.0.2
[INFO] [stderr]     Checking anstream v0.6.13
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling parking_lot_core v0.9.9
[INFO] [stderr]    Compiling anyhow v1.0.82
[INFO] [stderr]    Compiling cmake v0.1.50
[INFO] [stderr]     Checking ryu v1.0.17
[INFO] [stderr]     Checking getrandom v0.2.14
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking num-complex v0.4.5
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]    Compiling signal-hook v0.3.17
[INFO] [stderr]     Checking num-iter v0.1.44
[INFO] [stderr]    Compiling biodiff-wfa2-sys v2.3.5 (/opt/rustwide/workdir/biodiff-wfa2-sys)
[INFO] [stderr]     Checking signal-hook-registry v1.4.1
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr] error: failed to run custom build command for `biodiff-wfa2-sys v2.3.5 (/opt/rustwide/workdir/biodiff-wfa2-sys)`
[INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation.
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/biodiff-wfa2-sys-1ee41413b7d8c4d6/build-script-build` (exit status: 1)
[INFO] [stderr]   --- stderr
[INFO] [stderr]   The WFA2 submodule is not present. Please run `git submodule update --init` to fetch it.
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] running `Command { std: "docker" "inspect" "5a50b7eec4a0aabc9a2e36c4b927fe56f176248b2eed6123b0b41ed27e5a772c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5a50b7eec4a0aabc9a2e36c4b927fe56f176248b2eed6123b0b41ed27e5a772c", kill_on_drop: false }`
[INFO] [stdout] 5a50b7eec4a0aabc9a2e36c4b927fe56f176248b2eed6123b0b41ed27e5a772c
