[INFO] fetching crate alignoth 1.4.1...
[INFO] testing alignoth-1.4.1 against try#db823df02fd0c2cf67b43025ac3fef3f2d743245 for pr-150681
[INFO] extracting crate alignoth 1.4.1 into /workspace/builds/worker-5-tc2/source
[INFO] started tweaking crates.io crate alignoth 1.4.1
[INFO] finished tweaking crates.io crate alignoth 1.4.1
[INFO] tweaked toml for crates.io crate alignoth 1.4.1 written to /workspace/builds/worker-5-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate alignoth 1.4.1 on toolchain db823df02fd0c2cf67b43025ac3fef3f2d743245
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+db823df02fd0c2cf67b43025ac3fef3f2d743245" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate alignoth 1.4.1 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+db823df02fd0c2cf67b43025ac3fef3f2d743245" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:845e597a41426bbf2703be69acdb67d10b6de511142d05cba7bbe119c898b2c7" "/opt/rustwide/cargo-home/bin/cargo" "+db823df02fd0c2cf67b43025ac3fef3f2d743245" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 7be25a5edaf0eda220d89dd7e9fb0c4ff149a5869dbf8124ce2a2612945f74d4
[INFO] running `Command { std: "docker" "start" "-a" "7be25a5edaf0eda220d89dd7e9fb0c4ff149a5869dbf8124ce2a2612945f74d4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "7be25a5edaf0eda220d89dd7e9fb0c4ff149a5869dbf8124ce2a2612945f74d4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7be25a5edaf0eda220d89dd7e9fb0c4ff149a5869dbf8124ce2a2612945f74d4", kill_on_drop: false }`
[INFO] [stdout] 7be25a5edaf0eda220d89dd7e9fb0c4ff149a5869dbf8124ce2a2612945f74d4
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:845e597a41426bbf2703be69acdb67d10b6de511142d05cba7bbe119c898b2c7" "/opt/rustwide/cargo-home/bin/cargo" "+db823df02fd0c2cf67b43025ac3fef3f2d743245" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 99c440255bdcc89f34b48cb4a03d6ae986b5dcf8d15e4b079f661035c27a0f70
[INFO] running `Command { std: "docker" "start" "-a" "99c440255bdcc89f34b48cb4a03d6ae986b5dcf8d15e4b079f661035c27a0f70", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.172
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[INFO] [stderr]    Compiling crossterm v0.29.0
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[INFO] [stderr]    Compiling icu_collections v1.5.0
[INFO] [stderr]    Compiling ndarray v0.16.1
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[INFO] [stderr]    Compiling itertools-num v0.1.3
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[INFO] [stderr]    Compiling strum v0.26.3
[INFO] [stderr]    Compiling triple_accel v0.4.0
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling serde v1.0.228
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[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling hts-sys v2.2.0
[INFO] [stderr]    Compiling editdistancek v1.0.2
[INFO] [stderr]    Compiling icu_locid_transform v1.5.0
[INFO] [stderr]    Compiling dyn-clone v1.0.19
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[INFO] [stderr]    Compiling multimap v0.10.0
[INFO] [stderr]    Compiling inquire v0.9.1
[INFO] [stderr]    Compiling rand v0.9.2
[INFO] [stderr]    Compiling clap v2.34.0
[INFO] [stderr]    Compiling lz-str v0.2.1
[INFO] [stderr]    Compiling pest_derive v2.8.0
[INFO] [stderr]    Compiling tera v1.20.1
[INFO] [stderr]    Compiling icu_properties v1.5.1
[INFO] [stderr]    Compiling structopt v0.3.26
[INFO] [stderr]    Compiling icu_normalizer v1.5.0
[INFO] [stderr]    Compiling idna_adapter v1.2.0
[INFO] [stderr]    Compiling idna v1.0.3
[INFO] [stderr]    Compiling url v2.5.4
[INFO] [stderr]    Compiling statrs v0.18.0
[INFO] [stderr]    Compiling bio v2.3.0
[INFO] [stderr]    Compiling rust-htslib v0.51.0
[INFO] [stderr]    Compiling alignoth v1.4.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 3m 44s
[INFO] running `Command { std: "docker" "inspect" "99c440255bdcc89f34b48cb4a03d6ae986b5dcf8d15e4b079f661035c27a0f70", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "99c440255bdcc89f34b48cb4a03d6ae986b5dcf8d15e4b079f661035c27a0f70", kill_on_drop: false }`
[INFO] [stdout] 99c440255bdcc89f34b48cb4a03d6ae986b5dcf8d15e4b079f661035c27a0f70
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:845e597a41426bbf2703be69acdb67d10b6de511142d05cba7bbe119c898b2c7" "/opt/rustwide/cargo-home/bin/cargo" "+db823df02fd0c2cf67b43025ac3fef3f2d743245" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] e2c470e13eb4163bd9f992ba611e111fcffc38e579ad2df01dd92913a2e63ce0
[INFO] running `Command { std: "docker" "start" "-a" "e2c470e13eb4163bd9f992ba611e111fcffc38e579ad2df01dd92913a2e63ce0", kill_on_drop: false }`
[INFO] [stderr]    Compiling alignoth v1.4.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 3.13s
[INFO] running `Command { std: "docker" "inspect" "e2c470e13eb4163bd9f992ba611e111fcffc38e579ad2df01dd92913a2e63ce0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e2c470e13eb4163bd9f992ba611e111fcffc38e579ad2df01dd92913a2e63ce0", kill_on_drop: false }`
[INFO] [stdout] e2c470e13eb4163bd9f992ba611e111fcffc38e579ad2df01dd92913a2e63ce0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:845e597a41426bbf2703be69acdb67d10b6de511142d05cba7bbe119c898b2c7" "/opt/rustwide/cargo-home/bin/cargo" "+db823df02fd0c2cf67b43025ac3fef3f2d743245" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] bb7a28cbbe0f20a99f328809ec91a95b8b9718490cdfd2e12751cb6691dad239
[INFO] running `Command { std: "docker" "start" "-a" "bb7a28cbbe0f20a99f328809ec91a95b8b9718490cdfd2e12751cb6691dad239", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.29s
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/alignoth-92e0b00008a25e56)
[INFO] [stdout] 
[INFO] [stdout] running 32 tests
[INFO] [stdout] test cli::tests::test_data_format_deserialization ... ok
[INFO] [stdout] test cli::tests::test_region_deserialization ... ok
[INFO] [stdout] test cli::tests::test_region_from_around ... ok
[INFO] [stdout] test cli::tests::test_around_deserialization ... ok
[INFO] [stdout] test cli::tests::test_interval_deserialization ... ok
[INFO] [stdout] test plot::tests::test_coverage_from_reads_basic_overlap ... ok
[INFO] [stdout] test cli::tests::test_region_length ... ok
[INFO] [stdout] test plot::tests::test_empty_aux_record ... ok
[INFO] [stdout] test plot::tests::test_matching_bases ... ok
[INFO] [stdout] test highlight::tests::test_bed_intervals ... ok
[INFO] [stdout] test plot::tests::test_aux_record_to_string ... ok
[INFO] [stdout] test plot::tests::test_plot_cigar_deletion ... ok
[INFO] [stdout] test plot::tests::test_aux_record ... ok
[INFO] [stdout] test plot::tests::test_read_ordering ... ok
[INFO] [stdout] test plot::tests::test_read_ordering_with_max_read_depth ... ok
[INFO] [stdout] test plot::tests::test_filter_mismatches ... ok
[INFO] [stdout] test plot::tests::test_plot_cigar_from_str ... ok
[INFO] [stdout] test plot::tests::test_plot_cigar_insertion ... ok
[INFO] [stdout] test highlight::tests::test_vcf_interval_out_of_bounds ... ok
[INFO] [stdout] test plot::tests::test_plot_cigar_string_serialization ... ok
[INFO] [stdout] test plot::tests::test_plot_cigar_match ... ok
[INFO] [stdout] test utils::tests::test_ellipsis ... ok
[INFO] [stdout] test utils::tests::test_get_fasta_contigs ... ok
[INFO] [stdout] test cli::tests::test_data_format_to_string ... ok
[INFO] [stdout] test plot::tests::test_create_plot_data ... ok
[INFO] [stdout] test utils::tests::test_get_fasta_length ... ok
[INFO] [stdout] test utils::tests::test_get_ref_and_bam_from_empty_cwd ... ok
[INFO] [stdout] test highlight::tests::test_vcf_intervals ... ok
[INFO] [stdout] test tests::test_write_files ... ok
[INFO] [stdout] test plot::tests::test_fetch_reference ... ok
[INFO] [stdout] test plot::tests::test_read_position_with_softclips ... ok
[INFO] [stdout] test plot::tests::test_create_plot_data_2 ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 32 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 1.18s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "bb7a28cbbe0f20a99f328809ec91a95b8b9718490cdfd2e12751cb6691dad239", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "bb7a28cbbe0f20a99f328809ec91a95b8b9718490cdfd2e12751cb6691dad239", kill_on_drop: false }`
[INFO] [stdout] bb7a28cbbe0f20a99f328809ec91a95b8b9718490cdfd2e12751cb6691dad239