[INFO] cloning repository https://github.com/pombase/pombase-chado-json
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/pombase/pombase-chado-json" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fpombase%2Fpombase-chado-json", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fpombase%2Fpombase-chado-json'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 6c3329c9cafb85b5c662904fc8f646e2a2585024
[INFO] testing pombase/pombase-chado-json against try#db823df02fd0c2cf67b43025ac3fef3f2d743245 for pr-150681
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fpombase%2Fpombase-chado-json" "/workspace/builds/worker-4-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/pombase/pombase-chado-json
[INFO] finished tweaking git repo https://github.com/pombase/pombase-chado-json
[INFO] tweaked toml for git repo https://github.com/pombase/pombase-chado-json written to /workspace/builds/worker-4-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/pombase/pombase-chado-json on toolchain db823df02fd0c2cf67b43025ac3fef3f2d743245
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+db823df02fd0c2cf67b43025ac3fef3f2d743245" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/pombase/pombase-chado-json already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+db823df02fd0c2cf67b43025ac3fef3f2d743245" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:845e597a41426bbf2703be69acdb67d10b6de511142d05cba7bbe119c898b2c7" "/opt/rustwide/cargo-home/bin/cargo" "+db823df02fd0c2cf67b43025ac3fef3f2d743245" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] e2e37aa851fa28568890f80555ef8701fd11488f76ea319a58f4176e5cf04dcf
[INFO] running `Command { std: "docker" "start" "-a" "e2e37aa851fa28568890f80555ef8701fd11488f76ea319a58f4176e5cf04dcf", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "e2e37aa851fa28568890f80555ef8701fd11488f76ea319a58f4176e5cf04dcf", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e2e37aa851fa28568890f80555ef8701fd11488f76ea319a58f4176e5cf04dcf", kill_on_drop: false }`
[INFO] [stdout] e2e37aa851fa28568890f80555ef8701fd11488f76ea319a58f4176e5cf04dcf
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:845e597a41426bbf2703be69acdb67d10b6de511142d05cba7bbe119c898b2c7" "/opt/rustwide/cargo-home/bin/cargo" "+db823df02fd0c2cf67b43025ac3fef3f2d743245" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] cd327e65102b71d0d3d2a28953095d8567a532f34ea0beb9e004c591f658d700
[INFO] running `Command { std: "docker" "start" "-a" "cd327e65102b71d0d3d2a28953095d8567a532f34ea0beb9e004c591f658d700", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.103
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[INFO] [stderr]    Compiling pombase-chado-json v222.11.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 59s
[INFO] running `Command { std: "docker" "inspect" "cd327e65102b71d0d3d2a28953095d8567a532f34ea0beb9e004c591f658d700", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "cd327e65102b71d0d3d2a28953095d8567a532f34ea0beb9e004c591f658d700", kill_on_drop: false }`
[INFO] [stdout] cd327e65102b71d0d3d2a28953095d8567a532f34ea0beb9e004c591f658d700
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:845e597a41426bbf2703be69acdb67d10b6de511142d05cba7bbe119c898b2c7" "/opt/rustwide/cargo-home/bin/cargo" "+db823df02fd0c2cf67b43025ac3fef3f2d743245" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] ce843b26661b9034be4901c42f655ea036e9b7d479e83d64cadb8b6c1a0602e7
[INFO] running `Command { std: "docker" "start" "-a" "ce843b26661b9034be4901c42f655ea036e9b7d479e83d64cadb8b6c1a0602e7", kill_on_drop: false }`
[INFO] [stderr]    Compiling pombase-chado-json v222.11.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 23.45s
[INFO] running `Command { std: "docker" "inspect" "ce843b26661b9034be4901c42f655ea036e9b7d479e83d64cadb8b6c1a0602e7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ce843b26661b9034be4901c42f655ea036e9b7d479e83d64cadb8b6c1a0602e7", kill_on_drop: false }`
[INFO] [stdout] ce843b26661b9034be4901c42f655ea036e9b7d479e83d64cadb8b6c1a0602e7
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:845e597a41426bbf2703be69acdb67d10b6de511142d05cba7bbe119c898b2c7" "/opt/rustwide/cargo-home/bin/cargo" "+db823df02fd0c2cf67b43025ac3fef3f2d743245" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 3e9a0fe74954eef1580119f47986a1d4a04c3375e5f655157c09008bf431a1d8
[INFO] running `Command { std: "docker" "start" "-a" "3e9a0fe74954eef1580119f47986a1d4a04c3375e5f655157c09008bf431a1d8", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.54s
[INFO] [stderr]      Running unittests src/pombase/lib.rs (/opt/rustwide/target/debug/deps/pombase-bf90dc4d535617d9)
[INFO] [stdout] 
[INFO] [stdout] running 6 tests
[INFO] [stdout] test bio::util::test_format_gff ... ok
[INFO] [stdout] test web::vec_set::test_insert ... ok
[INFO] [stdout] test web::util::test_remove_first_string ... ok
[INFO] [stdout] test bio::util::test_read_seq ... ok
[INFO] [stdout] test web::vec_set::test_contains_superset ... ok
[INFO] [stdout] test bio::util::test_format_fasta ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 6 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.10s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/bin/pombase-chado-json.rs (/opt/rustwide/target/debug/deps/pombase_chado_json-8766aaca745863e0)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/bin/pombase-chado-load.rs (/opt/rustwide/target/debug/deps/pombase_chado_load-6d8ab0ea32dfe440)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/bin/pombase-create-annotations.rs (/opt/rustwide/target/debug/deps/pombase_create_annotations-37f5dd9fb4d04e9e)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/bin/pombase-server.rs (/opt/rustwide/target/debug/deps/pombase_server-c7a0d25ce5f4a19a)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/test_data_build.rs (/opt/rustwide/target/debug/deps/test_data_build-a8d9934f928bedde)
[INFO] [stdout] 
[INFO] [stdout] running 7 tests
[INFO] [stdout] test test_summary_row_equals ... ok
[INFO] [stdout] test test_compare_ext_part_with_config ... ok
[INFO] [stdout] test test_collect_ext_summary_genes ... ok
[INFO] [stdout] test test_remove_redundant_summaries ... ok
[INFO] [stdout] test test_remove_redundant_summary_rows ... ok
[INFO] [stdout] test test_merge_ext_part_ranges ... ok
[INFO] [stdout] test test_cmp_ont_annotation_detail ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 7 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.08s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/test_db_json.rs (/opt/rustwide/target/debug/deps/test_db_json-1ebf8dabdb0026e4)
[INFO] [stdout] 
[INFO] [stdout] running 9 tests
[INFO] [stdout] test test_remove_first_u32 ... ok
[INFO] [stdout] test test_collect_duplicated_relations ... ok
[INFO] [stdout] test test_gene_with ... ok
[INFO] [stdout] test test_terms ... ok
[INFO] [stdout] test test_make_publication_short ... ok
[INFO] [stdout] test test_genotype_annotation ... ok
[INFO] [stdout] test test_locations ... ok
[INFO] [stdout] test test_gene_details ... ok
[INFO] [stdout] test test_term_gene_count ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 9 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.55s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/test_query.rs (/opt/rustwide/target/debug/deps/test_query-378b2c1558baa8d4)
[INFO] [stdout] 
[INFO] [stdout] running 8 tests
[INFO] [stdout] test test_gene_subset ... ok
[INFO] [stdout] test test_output_options ... ok
[INFO] [stdout] test test_gene_subset_invert ... ok
[INFO] [stdout] test test_gene_gaf ... ok
[INFO] [stdout] test test_gene_subset_not_wildcard ... ok
[INFO] [stdout] test test_gene_subset_wildcard ... ok
[INFO] [stdout] test test_termid ... ok
[INFO] [stdout] test test_and_or_not ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 8 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.18s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/tests.rs (/opt/rustwide/target/debug/deps/tests-a8b170ff7acebebc)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests pombase
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "3e9a0fe74954eef1580119f47986a1d4a04c3375e5f655157c09008bf431a1d8", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3e9a0fe74954eef1580119f47986a1d4a04c3375e5f655157c09008bf431a1d8", kill_on_drop: false }`
[INFO] [stdout] 3e9a0fe74954eef1580119f47986a1d4a04c3375e5f655157c09008bf431a1d8