[INFO] fetching crate openbabel 0.5.4...
[INFO] testing openbabel-0.5.4 against try#db823df02fd0c2cf67b43025ac3fef3f2d743245 for pr-150681
[INFO] extracting crate openbabel 0.5.4 into /workspace/builds/worker-0-tc2/source
[INFO] started tweaking crates.io crate openbabel 0.5.4
[INFO] removed 0 missing examples
[INFO] finished tweaking crates.io crate openbabel 0.5.4
[INFO] tweaked toml for crates.io crate openbabel 0.5.4 written to /workspace/builds/worker-0-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate openbabel 0.5.4 on toolchain db823df02fd0c2cf67b43025ac3fef3f2d743245
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+db823df02fd0c2cf67b43025ac3fef3f2d743245" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate openbabel 0.5.4 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+db823df02fd0c2cf67b43025ac3fef3f2d743245" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:845e597a41426bbf2703be69acdb67d10b6de511142d05cba7bbe119c898b2c7" "/opt/rustwide/cargo-home/bin/cargo" "+db823df02fd0c2cf67b43025ac3fef3f2d743245" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 310c8d9d1cdc2f854f4d12c797a58ad3525dbe21b0fe21c431c77c7ad731ed2c
[INFO] running `Command { std: "docker" "start" "-a" "310c8d9d1cdc2f854f4d12c797a58ad3525dbe21b0fe21c431c77c7ad731ed2c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "310c8d9d1cdc2f854f4d12c797a58ad3525dbe21b0fe21c431c77c7ad731ed2c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "310c8d9d1cdc2f854f4d12c797a58ad3525dbe21b0fe21c431c77c7ad731ed2c", kill_on_drop: false }`
[INFO] [stdout] 310c8d9d1cdc2f854f4d12c797a58ad3525dbe21b0fe21c431c77c7ad731ed2c
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:845e597a41426bbf2703be69acdb67d10b6de511142d05cba7bbe119c898b2c7" "/opt/rustwide/cargo-home/bin/cargo" "+db823df02fd0c2cf67b43025ac3fef3f2d743245" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] b1d12b74902c4741d19831addbdcb9dc4186d7d6e4c5d64b80873a456aa2d9dd
[INFO] running `Command { std: "docker" "start" "-a" "b1d12b74902c4741d19831addbdcb9dc4186d7d6e4c5d64b80873a456aa2d9dd", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.93
[INFO] [stderr]    Compiling cc v1.0.73
[INFO] [stderr]    Compiling syn v1.0.91
[INFO] [stderr]    Compiling unicode-xid v0.2.2
[INFO] [stderr]    Compiling scratch v1.0.1
[INFO] [stderr]    Compiling termcolor v1.1.3
[INFO] [stderr]    Compiling cxxbridge-flags v1.0.67
[INFO] [stderr]    Compiling unicode-width v0.1.9
[INFO] [stderr]    Compiling once_cell v1.20.2
[INFO] [stderr]    Compiling rustversion v1.0.9
[INFO] [stderr]    Compiling fs_extra v1.2.0
[INFO] [stderr]    Compiling serde_derive v1.0.137
[INFO] [stderr]    Compiling serde v1.0.137
[INFO] [stderr]    Compiling codespan-reporting v0.11.1
[INFO] [stderr]    Compiling quote v1.0.38
[INFO] [stderr]    Compiling link-cplusplus v1.0.6
[INFO] [stderr]    Compiling cxx v1.0.67
[INFO] [stderr]    Compiling syn v2.0.96
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling cxx-build v1.0.68
[INFO] [stderr]    Compiling strum v0.26.3
[INFO] [stderr]    Compiling cxxbridge-macro v1.0.67
[INFO] [stderr]    Compiling openbabel-sys v0.5.4+openbabel-3.1.1
[INFO] [stderr]    Compiling openbabel v0.5.4 (/opt/rustwide/workdir)
[INFO] [stdout] warning: struct `StringForMol` is never constructed
[INFO] [stdout]  --> src/io/mod.rs:8:8
[INFO] [stdout]   |
[INFO] [stdout] 8 | struct StringForMol {
[INFO] [stdout]   |        ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `as_str` is never used
[INFO] [stdout]   --> src/io/mod.rs:14:12
[INFO] [stdout]    |
[INFO] [stdout] 13 | impl StringForMol {
[INFO] [stdout]    | ----------------- method in this implementation
[INFO] [stdout] 14 |     pub fn as_str(&self) -> &str {
[INFO] [stdout]    |            ^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `FileForMol` is never constructed
[INFO] [stdout]   --> src/io/mod.rs:37:8
[INFO] [stdout]    |
[INFO] [stdout] 37 | struct FileForMol<'a> {
[INFO] [stdout]    |        ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: enum `InputFormat` is never used
[INFO] [stdout]   --> src/io/formats.rs:12:10
[INFO] [stdout]    |
[INFO] [stdout] 12 | pub enum InputFormat {
[INFO] [stdout]    |          ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 29s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: fs_extra v1.2.0
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 2`
[INFO] running `Command { std: "docker" "inspect" "b1d12b74902c4741d19831addbdcb9dc4186d7d6e4c5d64b80873a456aa2d9dd", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b1d12b74902c4741d19831addbdcb9dc4186d7d6e4c5d64b80873a456aa2d9dd", kill_on_drop: false }`
[INFO] [stdout] b1d12b74902c4741d19831addbdcb9dc4186d7d6e4c5d64b80873a456aa2d9dd
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:845e597a41426bbf2703be69acdb67d10b6de511142d05cba7bbe119c898b2c7" "/opt/rustwide/cargo-home/bin/cargo" "+db823df02fd0c2cf67b43025ac3fef3f2d743245" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 605ef42f4569ffcea4c124f8dc2e279d13265bf18cc3e79c88b89759272a65cc
[INFO] running `Command { std: "docker" "start" "-a" "605ef42f4569ffcea4c124f8dc2e279d13265bf18cc3e79c88b89759272a65cc", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.126
[INFO] [stderr]    Compiling crossbeam-utils v0.8.8
[INFO] [stderr]    Compiling memoffset v0.6.5
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.8
[INFO] [stderr]    Compiling rayon-core v1.9.3
[INFO] [stderr]    Compiling num-traits v0.2.15
[INFO] [stderr]    Compiling serde_json v1.0.81
[INFO] [stderr]    Compiling either v1.6.1
[INFO] [stderr]    Compiling rayon v1.5.3
[INFO] [stderr]    Compiling half v2.4.1
[INFO] [stderr]    Compiling cxx-build v1.0.68
[INFO] [stderr]    Compiling plotters-backend v0.3.2
[INFO] [stderr]    Compiling ryu v1.0.10
[INFO] [stderr]    Compiling itoa v1.0.2
[INFO] [stderr]    Compiling ciborium-io v0.2.2
[INFO] [stderr]    Compiling clap_builder v4.5.26
[INFO] [stderr]    Compiling regex-syntax v0.6.26
[INFO] [stderr]    Compiling cast v0.3.0
[INFO] [stderr]    Compiling walkdir v2.3.2
[INFO] [stderr]    Compiling anes v0.1.6
[INFO] [stderr]    Compiling plotters-svg v0.3.1
[INFO] [stderr]    Compiling ciborium-ll v0.2.2
[INFO] [stderr]    Compiling itertools v0.10.3
[INFO] [stderr]    Compiling oorandom v11.1.3
[INFO] [stderr]    Compiling crossbeam-channel v0.5.4
[INFO] [stderr]    Compiling ciborium v0.2.2
[INFO] [stderr]    Compiling crossbeam-deque v0.8.1
[INFO] [stderr]    Compiling getrandom v0.2.7
[INFO] [stderr]    Compiling num_cpus v1.13.1
[INFO] [stderr]    Compiling is-terminal v0.4.13
[INFO] [stderr]    Compiling rand_core v0.6.3
[INFO] [stderr]    Compiling regex v1.5.6
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling plotters v0.3.1
[INFO] [stderr]    Compiling tinytemplate v1.2.1
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling criterion-plot v0.5.0
[INFO] [stderr]    Compiling openbabel-sys v0.5.4+openbabel-3.1.1
[INFO] [stderr]    Compiling chiral-db-sources v0.2.0
[INFO] [stderr]    Compiling clap v4.5.26
[INFO] [stderr]    Compiling criterion v0.5.1
[INFO] [stderr]    Compiling openbabel v0.5.4 (/opt/rustwide/workdir)
[INFO] [stdout] warning: struct `StringForMol` is never constructed
[INFO] [stdout]  --> src/io/mod.rs:8:8
[INFO] [stdout]   |
[INFO] [stdout] 8 | struct StringForMol {
[INFO] [stdout]   |        ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `as_str` is never used
[INFO] [stdout]   --> src/io/mod.rs:14:12
[INFO] [stdout]    |
[INFO] [stdout] 13 | impl StringForMol {
[INFO] [stdout]    | ----------------- method in this implementation
[INFO] [stdout] 14 |     pub fn as_str(&self) -> &str {
[INFO] [stdout]    |            ^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `FileForMol` is never constructed
[INFO] [stdout]   --> src/io/mod.rs:37:8
[INFO] [stdout]    |
[INFO] [stdout] 37 | struct FileForMol<'a> {
[INFO] [stdout]    |        ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: enum `InputFormat` is never used
[INFO] [stdout]   --> src/io/formats.rs:12:10
[INFO] [stdout]    |
[INFO] [stdout] 12 | pub enum InputFormat {
[INFO] [stdout]    |          ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 2m 34s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: fs_extra v1.2.0
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 2`
[INFO] running `Command { std: "docker" "inspect" "605ef42f4569ffcea4c124f8dc2e279d13265bf18cc3e79c88b89759272a65cc", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "605ef42f4569ffcea4c124f8dc2e279d13265bf18cc3e79c88b89759272a65cc", kill_on_drop: false }`
[INFO] [stdout] 605ef42f4569ffcea4c124f8dc2e279d13265bf18cc3e79c88b89759272a65cc
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:845e597a41426bbf2703be69acdb67d10b6de511142d05cba7bbe119c898b2c7" "/opt/rustwide/cargo-home/bin/cargo" "+db823df02fd0c2cf67b43025ac3fef3f2d743245" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] d0de515fa2630be0756799331bff50950735545269461c1554a0100f1400dc65
[INFO] running `Command { std: "docker" "start" "-a" "d0de515fa2630be0756799331bff50950735545269461c1554a0100f1400dc65", kill_on_drop: false }`
[INFO] [stderr] warning: struct `StringForMol` is never constructed
[INFO] [stderr]  --> src/io/mod.rs:8:8
[INFO] [stderr]   |
[INFO] [stderr] 8 | struct StringForMol {
[INFO] [stderr]   |        ^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: method `as_str` is never used
[INFO] [stderr]   --> src/io/mod.rs:14:12
[INFO] [stderr]    |
[INFO] [stderr] 13 | impl StringForMol {
[INFO] [stderr]    | ----------------- method in this implementation
[INFO] [stderr] 14 |     pub fn as_str(&self) -> &str {
[INFO] [stderr]    |            ^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: struct `FileForMol` is never constructed
[INFO] [stderr]   --> src/io/mod.rs:37:8
[INFO] [stderr]    |
[INFO] [stderr] 37 | struct FileForMol<'a> {
[INFO] [stderr]    |        ^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: enum `InputFormat` is never used
[INFO] [stderr]   --> src/io/formats.rs:12:10
[INFO] [stderr]    |
[INFO] [stderr] 12 | pub enum InputFormat {
[INFO] [stderr]    |          ^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: `openbabel` (lib) generated 4 warnings
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.16s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: fs_extra v1.2.0
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 2`
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/openbabel-cf90137c88b67e61)
[INFO] [stdout] 
[INFO] [stdout] running 10 tests
[INFO] [stderr] ==============================
[INFO] [stderr] *** Open Babel Error  in ReadFile
[INFO] [stderr]   Cannot read from ./openbabel-sys/openbabel/test/files/3o8g_uff.sdf
[INFO] [stderr] ==============================
[INFO] [stderr] *** Open Babel Error  in OBConversion_read_file
[INFO] [stderr]   OBConversion::ReadFile error
[INFO] [stderr] 
[INFO] [stderr] ==============================
[INFO] [stderr] *** Open Babel Error  in ParseParamFile
[INFO] [stderr]   Cannot open gaff.dat
[INFO] [stderr] ==============================
[INFO] [stderr] *** Open Babel Error  in ReadFile
[INFO] [stderr]   Cannot read from ./openbabel-sys/openbabel/test/files/00T_ideal.pdb
[INFO] [stderr] ==============================
[INFO] [stderr] *** Open Babel Error  in OBConversion_read_file
[INFO] [stderr]   OBConversion::ReadFile error
[INFO] [stderr] 
[INFO] [stderr] ==============================
[INFO] [stderr] *** Open Babel Error  in ReadFile
[INFO] [stderr]   Cannot read from ./openbabel-sys/openbabel/test/files/3o8g_uff.sdf
[INFO] [stderr] ==============================
[INFO] [stderr] *** Open Babel Error  in OBConversion_read_file
[INFO] [stderr]   OBConversion::ReadFile error
[INFO] [stderr] 
[INFO] [stdout] test molecule::test_mod_molecule::test_molecule ... ok
[INFO] [stderr] ==============================
[INFO] [stderr] *** Open Babel Error  in ReadPatternFile
[INFO] [stderr]   Cannot open patterns.txt
[INFO] [stderr] 
[INFO] [stderr] ==============================
[INFO] [stderr] *** Open Babel Error  in ReadPatternFile
[INFO] [stderr]   Cannot open SMARTS_InteLigand.txt
[INFO] [stderr] 
[INFO] [stderr] ==============================
[INFO] [stderr] *** Open Babel Error  in SetTypes
[INFO] [stderr]   Cannot open gaff.prm
[INFO] [stderr] ==============================
[INFO] [stderr] *** Open Babel Error  in OBForceField_setup
[INFO] [stderr]   OBForceField->Setup() error
[INFO] [stderr] 
[INFO] [stderr] error: test failed, to rerun pass `--lib`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/deps/openbabel-cf90137c88b67e61` (signal: 11, SIGSEGV: invalid memory reference)
[INFO] running `Command { std: "docker" "inspect" "d0de515fa2630be0756799331bff50950735545269461c1554a0100f1400dc65", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d0de515fa2630be0756799331bff50950735545269461c1554a0100f1400dc65", kill_on_drop: false }`
[INFO] [stdout] d0de515fa2630be0756799331bff50950735545269461c1554a0100f1400dc65
