[INFO] cloning repository https://github.com/COMBINE-lab/piscem
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/COMBINE-lab/piscem" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FCOMBINE-lab%2Fpiscem", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FCOMBINE-lab%2Fpiscem'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] a12e1ee0bfbf88a0208153fd49331c69b7c970ec
[INFO] checking COMBINE-lab/piscem against master#8c52f735abd1af9a73941b78fe7ed2ab08b9c0dd for pr-150557
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FCOMBINE-lab%2Fpiscem" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'...
[INFO] [stderr] done.
[INFO] removed /workspace/builds/worker-5-tc1/source/.cargo/config.toml
[INFO] started tweaking git repo https://github.com/COMBINE-lab/piscem
[INFO] finished tweaking git repo https://github.com/COMBINE-lab/piscem
[INFO] tweaked toml for git repo https://github.com/COMBINE-lab/piscem written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/COMBINE-lab/piscem on toolchain 8c52f735abd1af9a73941b78fe7ed2ab08b9c0dd
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8c52f735abd1af9a73941b78fe7ed2ab08b9c0dd" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/COMBINE-lab/piscem already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8c52f735abd1af9a73941b78fe7ed2ab08b9c0dd" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded terminal_size v0.4.2
[INFO] [stderr]   Downloaded path-tools v0.1.0
[INFO] [stderr]   Downloaded buffer-redux v1.0.2
[INFO] [stderr]   Downloaded sha2-asm v0.6.4
[INFO] [stderr]   Downloaded prepare_fasta v0.2.0
[INFO] [stderr]   Downloaded liblzma v0.3.6
[INFO] [stderr]   Downloaded needletail v0.6.3
[INFO] [stderr]   Downloaded liblzma-sys v0.3.13
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:98afbf2d16093dec2546ff8915fddc74e65664aa03fc460b3712b1c2c54a33e4" "/opt/rustwide/cargo-home/bin/cargo" "+8c52f735abd1af9a73941b78fe7ed2ab08b9c0dd" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] f239de4ec31b9b219ef2d8c508ea5720a1ef4980f47f951f5b0c458b399188a8
[INFO] running `Command { std: "docker" "start" "-a" "f239de4ec31b9b219ef2d8c508ea5720a1ef4980f47f951f5b0c458b399188a8", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "f239de4ec31b9b219ef2d8c508ea5720a1ef4980f47f951f5b0c458b399188a8", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f239de4ec31b9b219ef2d8c508ea5720a1ef4980f47f951f5b0c458b399188a8", kill_on_drop: false }`
[INFO] [stdout] f239de4ec31b9b219ef2d8c508ea5720a1ef4980f47f951f5b0c458b399188a8
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:98afbf2d16093dec2546ff8915fddc74e65664aa03fc460b3712b1c2c54a33e4" "/opt/rustwide/cargo-home/bin/cargo" "+8c52f735abd1af9a73941b78fe7ed2ab08b9c0dd" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 7177cfe107bdf371a5a7707f85a132abc46c4d1ef3709c61ac788c7ba71cb98f
[INFO] running `Command { std: "docker" "start" "-a" "7177cfe107bdf371a5a7707f85a132abc46c4d1ef3709c61ac788c7ba71cb98f", kill_on_drop: false }`
[INFO] [stderr]    Compiling rustix v1.0.7
[INFO] [stderr]    Compiling zstd-safe v7.2.4
[INFO] [stderr]    Compiling libc v0.2.174
[INFO] [stderr]    Compiling serde v1.0.219
[INFO] [stderr]     Checking crc32fast v1.5.0
[INFO] [stderr]     Checking buffer-redux v1.0.2
[INFO] [stderr]     Checking bytecount v0.6.9
[INFO] [stderr]    Compiling syn v2.0.104
[INFO] [stderr]     Checking tracing-log v0.2.0
[INFO] [stderr]     Checking thread_local v1.1.9
[INFO] [stderr]     Checking path-tools v0.1.0
[INFO] [stderr]     Checking flate2 v1.1.2
[INFO] [stderr]    Compiling jobserver v0.1.33
[INFO] [stderr]    Compiling cc v1.2.29
[INFO] [stderr]     Checking terminal_size v0.4.2
[INFO] [stderr]     Checking clap_builder v4.5.41
[INFO] [stderr]    Compiling cmake v0.1.54
[INFO] [stderr]    Compiling zstd-sys v2.0.15+zstd.1.5.7
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling liblzma-sys v0.3.13
[INFO] [stderr]    Compiling sha2-asm v0.6.4
[INFO] [stderr]    Compiling piscem v0.14.2 (/opt/rustwide/workdir)
[INFO] [stderr] error: failed to run custom build command for `piscem v0.14.2 (/opt/rustwide/workdir)`
[INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation.
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/piscem-6bcba66bbe13ed29/build-script-build` (exit status: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   cargo:rerun-if-changed=cuttlefish/CMakeLists.txt
[INFO] [stderr]   cargo:rerun-if-changed=piscem-cpp/CMakeLists.txt
[INFO] [stderr]   CMAKE_TOOLCHAIN_FILE_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   CMAKE_TOOLCHAIN_FILE_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   HOST_CMAKE_TOOLCHAIN_FILE = None
[INFO] [stderr]   CMAKE_TOOLCHAIN_FILE = None
[INFO] [stderr]   CMAKE_GENERATOR_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   CMAKE_GENERATOR_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   HOST_CMAKE_GENERATOR = None
[INFO] [stderr]   CMAKE_GENERATOR = None
[INFO] [stderr]   CMAKE_PREFIX_PATH_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   CMAKE_PREFIX_PATH_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   HOST_CMAKE_PREFIX_PATH = None
[INFO] [stderr]   CMAKE_PREFIX_PATH = None
[INFO] [stderr]   CMAKE_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   CMAKE_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   HOST_CMAKE = None
[INFO] [stderr]   CMAKE = None
[INFO] [stderr]   running: cd "/opt/rustwide/target/debug/build/piscem-e60977903d135efa/out/build" && CMAKE_PREFIX_PATH="" LC_ALL="C" "cmake" "/opt/rustwide/workdir/piscem-cpp" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/piscem-e60977903d135efa/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Debug"
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   CMake Warning:
[INFO] [stderr]     Ignoring extra path from command line:
[INFO] [stderr] 
[INFO] [stderr]      "/opt/rustwide/workdir/piscem-cpp"
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr]   CMake Error: The source directory "/opt/rustwide/workdir/piscem-cpp" does not appear to contain CMakeLists.txt.
[INFO] [stderr]   Specify --help for usage, or press the help button on the CMake GUI.
[INFO] [stderr] 
[INFO] [stderr]   thread 'main' (438) panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/cmake-0.1.54/src/lib.rs:1119:5:
[INFO] [stderr] 
[INFO] [stderr]   command did not execute successfully, got: exit status: 1
[INFO] [stderr] 
[INFO] [stderr]   build script failed, must exit now
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x59acee129782 - std[537962ca55f41443]::backtrace_rs::backtrace::libunwind::trace
[INFO] [stderr]                                  at /rustc/8c52f735abd1af9a73941b78fe7ed2ab08b9c0dd/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9
[INFO] [stderr]      1:     0x59acee129782 - std[537962ca55f41443]::backtrace_rs::backtrace::trace_unsynchronized::<std[537962ca55f41443]::sys::backtrace::_print_fmt::{closure#1}>
[INFO] [stderr]                                  at /rustc/8c52f735abd1af9a73941b78fe7ed2ab08b9c0dd/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14
[INFO] [stderr]      2:     0x59acee129782 - std[537962ca55f41443]::sys::backtrace::_print_fmt
[INFO] [stderr]                                  at /rustc/8c52f735abd1af9a73941b78fe7ed2ab08b9c0dd/library/std/src/sys/backtrace.rs:74:9
[INFO] [stderr]      3:     0x59acee129782 - <<std[537962ca55f41443]::sys::backtrace::BacktraceLock>::print::DisplayBacktrace as core[6c9c9c2c6e9466e2]::fmt::Display>::fmt
[INFO] [stderr]                                  at /rustc/8c52f735abd1af9a73941b78fe7ed2ab08b9c0dd/library/std/src/sys/backtrace.rs:44:26
[INFO] [stderr]      4:     0x59acee13e27a - <core[6c9c9c2c6e9466e2]::fmt::rt::Argument>::fmt
[INFO] [stderr]                                  at /rustc/8c52f735abd1af9a73941b78fe7ed2ab08b9c0dd/library/core/src/fmt/rt.rs:152:76
[INFO] [stderr]      5:     0x59acee13e27a - core[6c9c9c2c6e9466e2]::fmt::write
[INFO] [stderr]      6:     0x59acee12fea6 - std[537962ca55f41443]::io::default_write_fmt::<std[537962ca55f41443]::sys::stdio::unix::Stderr>
[INFO] [stderr]                                  at /rustc/8c52f735abd1af9a73941b78fe7ed2ab08b9c0dd/library/std/src/io/mod.rs:639:11
[INFO] [stderr]      7:     0x59acee12fea6 - <std[537962ca55f41443]::sys::stdio::unix::Stderr as std[537962ca55f41443]::io::Write>::write_fmt
[INFO] [stderr]                                  at /rustc/8c52f735abd1af9a73941b78fe7ed2ab08b9c0dd/library/std/src/io/mod.rs:1994:13
[INFO] [stderr]      8:     0x59acee10abdf - <std[537962ca55f41443]::sys::backtrace::BacktraceLock>::print
[INFO] [stderr]                                  at /rustc/8c52f735abd1af9a73941b78fe7ed2ab08b9c0dd/library/std/src/sys/backtrace.rs:47:9
[INFO] [stderr]      9:     0x59acee10abdf - std[537962ca55f41443]::panicking::default_hook::{closure#0}
[INFO] [stderr]                                  at /rustc/8c52f735abd1af9a73941b78fe7ed2ab08b9c0dd/library/std/src/panicking.rs:292:27
[INFO] [stderr]     10:     0x59acee124491 - std[537962ca55f41443]::panicking::default_hook
[INFO] [stderr]                                  at /rustc/8c52f735abd1af9a73941b78fe7ed2ab08b9c0dd/library/std/src/panicking.rs:319:9
[INFO] [stderr]     11:     0x59acee12464b - std[537962ca55f41443]::panicking::panic_with_hook
[INFO] [stderr]                                  at /rustc/8c52f735abd1af9a73941b78fe7ed2ab08b9c0dd/library/std/src/panicking.rs:825:13
[INFO] [stderr]     12:     0x59acee10ac98 - std[537962ca55f41443]::panicking::panic_handler::{closure#0}
[INFO] [stderr]                                  at /rustc/8c52f735abd1af9a73941b78fe7ed2ab08b9c0dd/library/std/src/panicking.rs:698:13
[INFO] [stderr]     13:     0x59acee1025b9 - std[537962ca55f41443]::sys::backtrace::__rust_end_short_backtrace::<std[537962ca55f41443]::panicking::panic_handler::{closure#0}, !>
[INFO] [stderr]                                  at /rustc/8c52f735abd1af9a73941b78fe7ed2ab08b9c0dd/library/std/src/sys/backtrace.rs:182:18
[INFO] [stderr]     14:     0x59acee10b63d - __rustc[cc0363f037a135f8]::rust_begin_unwind
[INFO] [stderr]                                  at /rustc/8c52f735abd1af9a73941b78fe7ed2ab08b9c0dd/library/std/src/panicking.rs:689:5
[INFO] [stderr]     15:     0x59acee13e98c - core[6c9c9c2c6e9466e2]::panicking::panic_fmt
[INFO] [stderr]                                  at /rustc/8c52f735abd1af9a73941b78fe7ed2ab08b9c0dd/library/core/src/panicking.rs:80:14
[INFO] [stderr]     16:     0x59acee089357 - cmake[9b18bd6d26524cd2]::fail
[INFO] [stderr]     17:     0x59acee088fe3 - cmake[9b18bd6d26524cd2]::run
[INFO] [stderr]     18:     0x59acee08e7bb - <cmake[9b18bd6d26524cd2]::Config>::build
[INFO] [stderr]     19:     0x59acee080b35 - build_script_build[816efce9e3bb0b58]::main
[INFO] [stderr]     20:     0x59acee083413 - <fn() as core[6c9c9c2c6e9466e2]::ops::function::FnOnce<()>>::call_once
[INFO] [stderr]     21:     0x59acee07fa66 - std[537962ca55f41443]::sys::backtrace::__rust_begin_short_backtrace::<fn(), ()>
[INFO] [stderr]     22:     0x59acee07fa79 - std[537962ca55f41443]::rt::lang_start::<()>::{closure#0}
[INFO] [stderr]     23:     0x59acee123546 - <&dyn core[6c9c9c2c6e9466e2]::ops::function::Fn<(), Output = i32> + core[6c9c9c2c6e9466e2]::marker::Sync + core[6c9c9c2c6e9466e2]::panic::unwind_safe::RefUnwindSafe as core[6c9c9c2c6e9466e2]::ops::function::FnOnce<()>>::call_once
[INFO] [stderr]                                  at /rustc/8c52f735abd1af9a73941b78fe7ed2ab08b9c0dd/library/core/src/ops/function.rs:287:21
[INFO] [stderr]     24:     0x59acee123546 - std[537962ca55f41443]::panicking::catch_unwind::do_call::<&dyn core[6c9c9c2c6e9466e2]::ops::function::Fn<(), Output = i32> + core[6c9c9c2c6e9466e2]::marker::Sync + core[6c9c9c2c6e9466e2]::panic::unwind_safe::RefUnwindSafe, i32>
[INFO] [stderr]                                  at /rustc/8c52f735abd1af9a73941b78fe7ed2ab08b9c0dd/library/std/src/panicking.rs:581:40
[INFO] [stderr]     25:     0x59acee123546 - std[537962ca55f41443]::panicking::catch_unwind::<i32, &dyn core[6c9c9c2c6e9466e2]::ops::function::Fn<(), Output = i32> + core[6c9c9c2c6e9466e2]::marker::Sync + core[6c9c9c2c6e9466e2]::panic::unwind_safe::RefUnwindSafe>
[INFO] [stderr]                                  at /rustc/8c52f735abd1af9a73941b78fe7ed2ab08b9c0dd/library/std/src/panicking.rs:544:19
[INFO] [stderr]     26:     0x59acee123546 - std[537962ca55f41443]::panic::catch_unwind::<&dyn core[6c9c9c2c6e9466e2]::ops::function::Fn<(), Output = i32> + core[6c9c9c2c6e9466e2]::marker::Sync + core[6c9c9c2c6e9466e2]::panic::unwind_safe::RefUnwindSafe, i32>
[INFO] [stderr]                                  at /rustc/8c52f735abd1af9a73941b78fe7ed2ab08b9c0dd/library/std/src/panic.rs:359:14
[INFO] [stderr]     27:     0x59acee123546 - std[537962ca55f41443]::rt::lang_start_internal::{closure#0}
[INFO] [stderr]                                  at /rustc/8c52f735abd1af9a73941b78fe7ed2ab08b9c0dd/library/std/src/rt.rs:175:24
[INFO] [stderr]     28:     0x59acee123546 - std[537962ca55f41443]::panicking::catch_unwind::do_call::<std[537962ca55f41443]::rt::lang_start_internal::{closure#0}, isize>
[INFO] [stderr]                                  at /rustc/8c52f735abd1af9a73941b78fe7ed2ab08b9c0dd/library/std/src/panicking.rs:581:40
[INFO] [stderr]     29:     0x59acee123546 - std[537962ca55f41443]::panicking::catch_unwind::<isize, std[537962ca55f41443]::rt::lang_start_internal::{closure#0}>
[INFO] [stderr]                                  at /rustc/8c52f735abd1af9a73941b78fe7ed2ab08b9c0dd/library/std/src/panicking.rs:544:19
[INFO] [stderr]     30:     0x59acee123546 - std[537962ca55f41443]::panic::catch_unwind::<std[537962ca55f41443]::rt::lang_start_internal::{closure#0}, isize>
[INFO] [stderr]                                  at /rustc/8c52f735abd1af9a73941b78fe7ed2ab08b9c0dd/library/std/src/panic.rs:359:14
[INFO] [stderr]     31:     0x59acee123546 - std[537962ca55f41443]::rt::lang_start_internal
[INFO] [stderr]                                  at /rustc/8c52f735abd1af9a73941b78fe7ed2ab08b9c0dd/library/std/src/rt.rs:171:5
[INFO] [stderr]     32:     0x59acee07f581 - std[537962ca55f41443]::rt::lang_start::<()>
[INFO] [stderr]     33:     0x59acee0834c5 - main
[INFO] [stderr]     34:     0x79519ce891ca - <unknown>
[INFO] [stderr]     35:     0x79519ce8928b - __libc_start_main
[INFO] [stderr]     36:     0x59acee07e835 - _start
[INFO] [stderr]     37:                0x0 - <unknown>
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] running `Command { std: "docker" "inspect" "7177cfe107bdf371a5a7707f85a132abc46c4d1ef3709c61ac788c7ba71cb98f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7177cfe107bdf371a5a7707f85a132abc46c4d1ef3709c61ac788c7ba71cb98f", kill_on_drop: false }`
[INFO] [stdout] 7177cfe107bdf371a5a7707f85a132abc46c4d1ef3709c61ac788c7ba71cb98f
