[INFO] cloning repository https://github.com/keithyin/align-hmm
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/keithyin/align-hmm" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkeithyin%2Falign-hmm", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkeithyin%2Falign-hmm'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] a0fa9a7347a7f5964fcaa64b15654e3602cbeab4
[INFO] checking keithyin/align-hmm against master#82dd3cb008233bfe50ba6b8d6618e6bbd6054eb1 for pr-150408
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkeithyin%2Falign-hmm" "/workspace/builds/worker-0-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/keithyin/align-hmm
[INFO] finished tweaking git repo https://github.com/keithyin/align-hmm
[INFO] tweaked toml for git repo https://github.com/keithyin/align-hmm written to /workspace/builds/worker-0-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/keithyin/align-hmm on toolchain 82dd3cb008233bfe50ba6b8d6618e6bbd6054eb1
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+82dd3cb008233bfe50ba6b8d6618e6bbd6054eb1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/keithyin/align-hmm already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+82dd3cb008233bfe50ba6b8d6618e6bbd6054eb1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded thiserror v2.0.8
[INFO] [stderr]   Downloaded multimap v0.9.1
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded derive-new v0.7.0
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded thiserror-impl v2.0.8
[INFO] [stderr]   Downloaded ordered-float v4.5.0
[INFO] [stderr]   Downloaded gskits v0.11.0
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded mm2 v0.16.0
[INFO] [stderr]   Downloaded minimap2 v0.1.22+minimap2.2.28
[INFO] [stderr]   Downloaded buffer-redux v1.0.2
[INFO] [stderr]   Downloaded rust-htslib v0.49.0
[INFO] [stderr]   Downloaded statrs v0.17.1
[INFO] [stderr]   Downloaded statrs v0.16.1
[INFO] [stderr]   Downloaded bio v2.0.3
[INFO] [stderr]   Downloaded bio v1.6.0
[INFO] [stderr]   Downloaded nalgebra v0.32.6
[INFO] [stderr]   Downloaded minimap2-sys v0.1.20+minimap2.2.28
[INFO] [stderr]   Downloaded needletail v0.6.1
[INFO] [stderr]   Downloaded hts-sys v2.2.0
[INFO] [stderr]   Downloaded openssl-src v300.4.1+3.4.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:845e597a41426bbf2703be69acdb67d10b6de511142d05cba7bbe119c898b2c7" "/opt/rustwide/cargo-home/bin/cargo" "+82dd3cb008233bfe50ba6b8d6618e6bbd6054eb1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] a62abfbfc96d29cd862a9c2289e598d7afc60a845a3256ac8f7ad3abccfe678d
[INFO] running `Command { std: "docker" "start" "-a" "a62abfbfc96d29cd862a9c2289e598d7afc60a845a3256ac8f7ad3abccfe678d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "a62abfbfc96d29cd862a9c2289e598d7afc60a845a3256ac8f7ad3abccfe678d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a62abfbfc96d29cd862a9c2289e598d7afc60a845a3256ac8f7ad3abccfe678d", kill_on_drop: false }`
[INFO] [stdout] a62abfbfc96d29cd862a9c2289e598d7afc60a845a3256ac8f7ad3abccfe678d
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:845e597a41426bbf2703be69acdb67d10b6de511142d05cba7bbe119c898b2c7" "/opt/rustwide/cargo-home/bin/cargo" "+82dd3cb008233bfe50ba6b8d6618e6bbd6054eb1" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] af290931876610a0c346fddd5339a85a8df8230f8d284099e9c053d6f1d239d9
[INFO] running `Command { std: "docker" "start" "-a" "af290931876610a0c346fddd5339a85a8df8230f8d284099e9c053d6f1d239d9", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.92
[INFO] [stderr]    Compiling unicode-ident v1.0.14
[INFO] [stderr]    Compiling libc v0.2.168
[INFO] [stderr]    Compiling libm v0.2.11
[INFO] [stderr]    Compiling pkg-config v0.3.31
[INFO] [stderr]     Checking stable_deref_trait v1.2.0
[INFO] [stderr]    Compiling serde v1.0.216
[INFO] [stderr]     Checking bytemuck v1.20.0
[INFO] [stderr]     Checking litemap v0.7.4
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling matrixmultiply v0.3.9
[INFO] [stderr]     Checking writeable v0.5.5
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]    Compiling rustversion v1.0.18
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling regex-syntax v0.8.5
[INFO] [stderr]     Checking icu_locid_transform_data v1.5.0
[INFO] [stderr]    Compiling libloading v0.8.6
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]     Checking smallvec v1.13.2
[INFO] [stderr]     Checking icu_properties_data v1.5.0
[INFO] [stderr]     Checking safe_arch v0.7.2
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling either v1.13.0
[INFO] [stderr]     Checking itoa v1.0.14
[INFO] [stderr]    Compiling bindgen v0.69.5
[INFO] [stderr]     Checking once_cell v1.20.2
[INFO] [stderr]    Compiling itertools v0.12.1
[INFO] [stderr]    Compiling bitflags v2.6.0
[INFO] [stderr]     Checking utf16_iter v1.0.5
[INFO] [stderr]     Checking wide v0.7.30
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]     Checking icu_normalizer_data v1.5.0
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking write16 v1.0.0
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]     Checking tracing-core v0.1.33
[INFO] [stderr]     Checking hashbrown v0.15.2
[INFO] [stderr]     Checking bytecount v0.6.8
[INFO] [stderr]    Compiling anyhow v1.0.94
[INFO] [stderr]     Checking csv-core v0.1.11
[INFO] [stderr]     Checking fixedbitset v0.4.2
[INFO] [stderr]    Compiling thiserror v2.0.8
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]    Compiling portable-atomic v1.10.0
[INFO] [stderr]    Compiling quote v1.0.37
[INFO] [stderr]     Checking anstyle-parse v0.2.6
[INFO] [stderr]    Compiling jobserver v0.1.32
[INFO] [stderr]    Compiling syn v2.0.90
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]     Checking form_urlencoded v1.2.1
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking getrandom v0.2.15
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking unicode-width v0.1.14
[INFO] [stderr]     Checking anstyle v1.0.10
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]    Compiling serde_json v1.0.133
[INFO] [stderr]     Checking anstyle-query v1.1.2
[INFO] [stderr]     Checking editdistancek v1.0.2
[INFO] [stderr]     Checking pin-project-lite v0.2.15
[INFO] [stderr]     Checking colorchoice v1.0.3
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]     Checking bit-vec v0.8.0
[INFO] [stderr]     Checking deranged v0.3.11
[INFO] [stderr]     Checking console v0.15.8
[INFO] [stderr]    Compiling cc v1.2.4
[INFO] [stderr]     Checking indexmap v2.7.0
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]     Checking ndarray v0.16.1
[INFO] [stderr]     Checking anstream v0.6.18
[INFO] [stderr]     Checking bit-set v0.8.0
[INFO] [stderr]     Checking ordered-float v4.5.0
[INFO] [stderr]    Compiling regex-automata v0.4.9
[INFO] [stderr]     Checking simba v0.8.1
[INFO] [stderr]     Checking simba v0.6.0
[INFO] [stderr]     Checking itertools v0.13.0
[INFO] [stderr]     Checking buffer-redux v1.0.2
[INFO] [stderr]     Checking petgraph v0.6.5
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]     Checking unicode-width v0.2.0
[INFO] [stderr]     Checking strum v0.26.3
[INFO] [stderr]     Checking num_threads v0.1.7
[INFO] [stderr]     Checking sha1_smol v1.0.1
[INFO] [stderr]     Checking clap_lex v0.7.4
[INFO] [stderr]     Checking bit-vec v0.6.3
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking iana-time-zone v0.1.61
[INFO] [stderr]     Checking uuid v1.11.0
[INFO] [stderr]     Checking chrono v0.4.39
[INFO] [stderr]     Checking time v0.3.37
[INFO] [stderr]    Compiling cmake v0.1.52
[INFO] [stderr]    Compiling openssl-src v300.4.1+3.4.0
[INFO] [stderr]     Checking bit-set v0.5.3
[INFO] [stderr]     Checking clap_builder v4.5.23
[INFO] [stderr]     Checking indicatif v0.17.9
[INFO] [stderr]     Checking tracing-log v0.2.0
[INFO] [stderr]     Checking needletail v0.6.1
[INFO] [stderr]     Checking ndarray v0.15.6
[INFO] [stderr]     Checking rayon-core v1.12.1
[INFO] [stderr]     Checking num_cpus v1.16.0
[INFO] [stderr]    Compiling libz-sys v1.1.20
[INFO] [stderr]    Compiling openssl-sys v0.9.104
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling regex v1.11.1
[INFO] [stderr]    Compiling curl-sys v0.4.78+curl-8.11.0
[INFO] [stderr] error: could not compile `clang-sys` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/82dd3cb008233bfe50ba6b8d6618e6bbd6054eb1/bin/rustc --crate-name clang_sys --edition=2021 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/clang-sys-1.8.1/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no --cfg 'feature="clang_3_5"' --cfg 'feature="clang_3_6"' --cfg 'feature="clang_3_7"' --cfg 'feature="clang_3_8"' --cfg 'feature="clang_3_9"' --cfg 'feature="clang_4_0"' --cfg 'feature="clang_5_0"' --cfg 'feature="clang_6_0"' --cfg 'feature="libloading"' --cfg 'feature="runtime"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("clang_10_0", "clang_11_0", "clang_12_0", "clang_13_0", "clang_14_0", "clang_15_0", "clang_16_0", "clang_17_0", "clang_18_0", "clang_3_5", "clang_3_6", "clang_3_7", "clang_3_8", "clang_3_9", "clang_4_0", "clang_5_0", "clang_6_0", "clang_7_0", "clang_8_0", "clang_9_0", "libcpp", "libloading", "runtime", "static"))' -C metadata=182c08b2e9503714 -C extra-filename=-2cd4dfa9f94e23d8 --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern glob=/opt/rustwide/target/debug/deps/libglob-3a1c0b92f1eb37f5.rmeta --extern libc=/opt/rustwide/target/debug/deps/liblibc-02e78834294ee460.rmeta --extern libloading=/opt/rustwide/target/debug/deps/liblibloading-30a0a5d62d5b602b.rmeta --cap-lints allow --cap-lints=forbid` (signal: 9, SIGKILL: kill)
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: could not compile `simba` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/82dd3cb008233bfe50ba6b8d6618e6bbd6054eb1/bin/rustc --crate-name simba --edition=2018 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/simba-0.6.0/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata -C embed-bitcode=no -C debuginfo=2 --cfg 'feature="std"' --cfg 'feature="wide"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("cordic", "decimal", "default", "fixed", "libm", "libm_force", "packed_simd", "partial_fixed_point_support", "rand", "serde", "serde_serialize", "std", "wide"))' -C metadata=39f38e0f13283d9e -C extra-filename=-d3ca36cdd71925bd --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern approx=/opt/rustwide/target/debug/deps/libapprox-0894f4181f999721.rmeta --extern num_complex=/opt/rustwide/target/debug/deps/libnum_complex-af0c0e5847e1aa1a.rmeta --extern num_traits=/opt/rustwide/target/debug/deps/libnum_traits-f8dd2231930c8ee5.rmeta --extern paste=/opt/rustwide/target/debug/deps/libpaste-c5e5e8a2bd161c29.so --extern wide=/opt/rustwide/target/debug/deps/libwide-9248afc3c2a54a00.rmeta --cap-lints allow --cap-lints=forbid` (signal: 9, SIGKILL: kill)
[INFO] running `Command { std: "docker" "inspect" "af290931876610a0c346fddd5339a85a8df8230f8d284099e9c053d6f1d239d9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "af290931876610a0c346fddd5339a85a8df8230f8d284099e9c053d6f1d239d9", kill_on_drop: false }`
[INFO] [stdout] af290931876610a0c346fddd5339a85a8df8230f8d284099e9c053d6f1d239d9