[INFO] cloning repository https://github.com/lgi-onehealth/phcue-qc
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/lgi-onehealth/phcue-qc" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Flgi-onehealth%2Fphcue-qc", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Flgi-onehealth%2Fphcue-qc'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] d5810d5e1714d5b70501b507a4fc9ed96e8c50d5
[INFO] checking lgi-onehealth/phcue-qc/d5810d5e1714d5b70501b507a4fc9ed96e8c50d5 against master#82dd3cb008233bfe50ba6b8d6618e6bbd6054eb1 for pr-150408
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Flgi-onehealth%2Fphcue-qc" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/lgi-onehealth/phcue-qc
[INFO] finished tweaking git repo https://github.com/lgi-onehealth/phcue-qc
[INFO] tweaked toml for git repo https://github.com/lgi-onehealth/phcue-qc written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/lgi-onehealth/phcue-qc on toolchain 82dd3cb008233bfe50ba6b8d6618e6bbd6054eb1
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+82dd3cb008233bfe50ba6b8d6618e6bbd6054eb1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/lgi-onehealth/phcue-qc already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+82dd3cb008233bfe50ba6b8d6618e6bbd6054eb1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded os_str_bytes v6.1.0
[INFO] [stderr]   Downloaded find_peaks v0.1.5
[INFO] [stderr]   Downloaded clap_derive v3.2.7
[INFO] [stderr]   Downloaded lz4 v1.23.3
[INFO] [stderr]   Downloaded fastq v0.6.0
[INFO] [stderr]   Downloaded clap v3.2.10
[INFO] [stderr]   Downloaded lz4-sys v1.9.3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:845e597a41426bbf2703be69acdb67d10b6de511142d05cba7bbe119c898b2c7" "/opt/rustwide/cargo-home/bin/cargo" "+82dd3cb008233bfe50ba6b8d6618e6bbd6054eb1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] b25daf5565b49383fcd04bf7f773e25a063a84312d01bcbcc68c90818757091c
[INFO] running `Command { std: "docker" "start" "-a" "b25daf5565b49383fcd04bf7f773e25a063a84312d01bcbcc68c90818757091c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "b25daf5565b49383fcd04bf7f773e25a063a84312d01bcbcc68c90818757091c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b25daf5565b49383fcd04bf7f773e25a063a84312d01bcbcc68c90818757091c", kill_on_drop: false }`
[INFO] [stdout] b25daf5565b49383fcd04bf7f773e25a063a84312d01bcbcc68c90818757091c
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:845e597a41426bbf2703be69acdb67d10b6de511142d05cba7bbe119c898b2c7" "/opt/rustwide/cargo-home/bin/cargo" "+82dd3cb008233bfe50ba6b8d6618e6bbd6054eb1" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 2336e49860e10c7d5b61b58b3b5bbdad0193b05daa9b640fdeb7137156d9b6d4
[INFO] running `Command { std: "docker" "start" "-a" "2336e49860e10c7d5b61b58b3b5bbdad0193b05daa9b640fdeb7137156d9b6d4", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.40
[INFO] [stderr]    Compiling unicode-ident v1.0.1
[INFO] [stderr]    Compiling quote v1.0.20
[INFO] [stderr]    Compiling libc v0.2.126
[INFO] [stderr]    Compiling syn v1.0.98
[INFO] [stderr]    Compiling crossbeam-utils v0.8.10
[INFO] [stderr]    Compiling serde_derive v1.0.139
[INFO] [stderr]    Compiling libz-sys v1.1.8
[INFO] [stderr]    Compiling lz4-sys v1.9.3
[INFO] [stderr]    Compiling serde v1.0.139
[INFO] [stderr]    Compiling arrayvec v0.4.12
[INFO] [stderr]     Checking hashbrown v0.12.2
[INFO] [stderr]    Compiling serde_json v1.0.82
[INFO] [stderr]     Checking os_str_bytes v6.1.0
[INFO] [stderr]     Checking itoa v0.4.8
[INFO] [stderr]     Checking find_peaks v0.1.5
[INFO] [stderr]     Checking clap_lex v0.2.4
[INFO] [stderr]     Checking flate2 v1.0.24
[INFO] [stderr]     Checking num-format v0.4.0
[INFO] [stderr]     Checking crossbeam-channel v0.5.5
[INFO] [stderr]     Checking indexmap v1.9.1
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking parking_lot_core v0.9.3
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]     Checking hdrhistogram v7.5.0
[INFO] [stderr]     Checking dashmap v5.3.4
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling clap_derive v3.2.7
[INFO] [stderr]     Checking clap v3.2.10
[INFO] [stderr]     Checking lz4 v1.23.3
[INFO] [stderr]     Checking fastq v0.6.0
[INFO] [stderr]     Checking phcue-qc v0.3.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused variable: `min_count`
[INFO] [stdout]   --> src/main.rs:96:61
[INFO] [stdout]    |
[INFO] [stdout] 96 |     fn get_depth_coverage(&mut self, hist: &Histogram<u64>, min_count: &u64) {
[INFO] [stdout]    |                                                             ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_min_count`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `min_count`
[INFO] [stdout]   --> src/main.rs:96:61
[INFO] [stdout]    |
[INFO] [stdout] 96 |     fn get_depth_coverage(&mut self, hist: &Histogram<u64>, min_count: &u64) {
[INFO] [stdout]    |                                                             ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_min_count`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 24.83s
[INFO] running `Command { std: "docker" "inspect" "2336e49860e10c7d5b61b58b3b5bbdad0193b05daa9b640fdeb7137156d9b6d4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2336e49860e10c7d5b61b58b3b5bbdad0193b05daa9b640fdeb7137156d9b6d4", kill_on_drop: false }`
[INFO] [stdout] 2336e49860e10c7d5b61b58b3b5bbdad0193b05daa9b640fdeb7137156d9b6d4
