[INFO] fetching crate blobtk 0.7.9...
[INFO] checking blobtk-0.7.9 against master#2ca7bcd03b87b52f7055a59b817443b0ac4a530d for pr-150322
[INFO] extracting crate blobtk 0.7.9 into /workspace/builds/worker-7-tc1/source
[INFO] started tweaking crates.io crate blobtk 0.7.9
[INFO] finished tweaking crates.io crate blobtk 0.7.9
[INFO] tweaked toml for crates.io crate blobtk 0.7.9 written to /workspace/builds/worker-7-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate blobtk 0.7.9 on toolchain 2ca7bcd03b87b52f7055a59b817443b0ac4a530d
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+2ca7bcd03b87b52f7055a59b817443b0ac4a530d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate blobtk 0.7.9 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+2ca7bcd03b87b52f7055a59b817443b0ac4a530d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:845e597a41426bbf2703be69acdb67d10b6de511142d05cba7bbe119c898b2c7" "/opt/rustwide/cargo-home/bin/cargo" "+2ca7bcd03b87b52f7055a59b817443b0ac4a530d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 39999ebefac15b56fe27b37231270d9bda5916e2aa426f9277263ccbfc53a9f3
[INFO] running `Command { std: "docker" "start" "-a" "39999ebefac15b56fe27b37231270d9bda5916e2aa426f9277263ccbfc53a9f3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "39999ebefac15b56fe27b37231270d9bda5916e2aa426f9277263ccbfc53a9f3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "39999ebefac15b56fe27b37231270d9bda5916e2aa426f9277263ccbfc53a9f3", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:845e597a41426bbf2703be69acdb67d10b6de511142d05cba7bbe119c898b2c7" "/opt/rustwide/cargo-home/bin/cargo" "+2ca7bcd03b87b52f7055a59b817443b0ac4a530d" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "start" "-a" "adeb61c1413db6ed83b6ec185ad3672820cf79e235d0130a4dbc14aca773e623", kill_on_drop: false }`
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[INFO] [stderr]     Checking blobtk v0.7.9 (/opt/rustwide/workdir)
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]     --> src/index.rs:1420:44
[INFO] [stdout]      |
[INFO] [stdout] 1420 |     fn parse_busco_txt_summary<R: BufRead>(mut reader: R) -> Result<BuscoSummary, anyhow::Error> {
[INFO] [stdout]      |                                            ----^^^^^^
[INFO] [stdout]      |                                            |
[INFO] [stdout]      |                                            help: remove this `mut`
[INFO] [stdout]      |
[INFO] [stdout]      = note: `#[warn(unused_mut)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]     --> src/index.rs:1436:13
[INFO] [stdout]      |
[INFO] [stdout] 1436 |         let mut domain = String::new();
[INFO] [stdout]      |             ----^^^^^^
[INFO] [stdout]      |             |
[INFO] [stdout]      |             help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]     --> src/index.rs:1437:13
[INFO] [stdout]      |
[INFO] [stdout] 1437 |         let mut number_of_scaffolds = 0usize;
[INFO] [stdout]      |             ----^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]      |             |
[INFO] [stdout]      |             help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]     --> src/index.rs:1438:13
[INFO] [stdout]      |
[INFO] [stdout] 1438 |         let mut number_of_contigs = 0usize;
[INFO] [stdout]      |             ----^^^^^^^^^^^^^^^^^
[INFO] [stdout]      |             |
[INFO] [stdout]      |             help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]     --> src/index.rs:1439:13
[INFO] [stdout]      |
[INFO] [stdout] 1439 |         let mut total_length = 0usize;
[INFO] [stdout]      |             ----^^^^^^^^^^^^
[INFO] [stdout]      |             |
[INFO] [stdout]      |             help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]     --> src/index.rs:1440:13
[INFO] [stdout]      |
[INFO] [stdout] 1440 |         let mut percent_gaps = 0.0;
[INFO] [stdout]      |             ----^^^^^^^^^^^^
[INFO] [stdout]      |             |
[INFO] [stdout]      |             help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]     --> src/index.rs:1441:13
[INFO] [stdout]      |
[INFO] [stdout] 1441 |         let mut scaffold_n50 = 0usize;
[INFO] [stdout]      |             ----^^^^^^^^^^^^
[INFO] [stdout]      |             |
[INFO] [stdout]      |             help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]     --> src/index.rs:1442:13
[INFO] [stdout]      |
[INFO] [stdout] 1442 |         let mut contigs_n50 = 0usize;
[INFO] [stdout]      |             ----^^^^^^^^^^^
[INFO] [stdout]      |             |
[INFO] [stdout]      |             help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `summary_line` is assigned to, but never used
[INFO] [stdout]     --> src/index.rs:1429:13
[INFO] [stdout]      |
[INFO] [stdout] 1429 |         let mut summary_line = String::new();
[INFO] [stdout]      |             ^^^^^^^^^^^^^^^^
[INFO] [stdout]      |
[INFO] [stdout]      = note: consider using `_summary_line` instead
[INFO] [stdout]      = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `domain`
[INFO] [stdout]     --> src/index.rs:1436:13
[INFO] [stdout]      |
[INFO] [stdout] 1436 |         let mut domain = String::new();
[INFO] [stdout]      |             ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_domain`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `summary_line` is never read
[INFO] [stdout]     --> src/index.rs:1467:17
[INFO] [stdout]      |
[INFO] [stdout] 1467 |                 summary_line = line.trim().to_string();
[INFO] [stdout]      |                 ^^^^^^^^^^^^
[INFO] [stdout]      |
[INFO] [stdout]      = help: maybe it is overwritten before being read?
[INFO] [stdout]      = note: `#[warn(unused_assignments)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `rank_set`
[INFO] [stdout]   --> src/parse/lookup.rs:30:9
[INFO] [stdout]    |
[INFO] [stdout] 30 |     let rank_set: HashSet<&str> = HashSet::from_iter(RANKS.iter().cloned());
[INFO] [stdout]    |         ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_rank_set`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `higher_rank_set`
[INFO] [stdout]   --> src/parse/lookup.rs:31:9
[INFO] [stdout]    |
[INFO] [stdout] 31 |     let higher_rank_set: HashSet<&str> = HashSet::from_iter(HIGHER_RANKS.iter().cloned());
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_higher_rank_set`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]     --> src/index.rs:1420:44
[INFO] [stdout]      |
[INFO] [stdout] 1420 |     fn parse_busco_txt_summary<R: BufRead>(mut reader: R) -> Result<BuscoSummary, anyhow::Error> {
[INFO] [stdout]      |                                            ----^^^^^^
[INFO] [stdout]      |                                            |
[INFO] [stdout]      |                                            help: remove this `mut`
[INFO] [stdout]      |
[INFO] [stdout]      = note: `#[warn(unused_mut)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]     --> src/index.rs:1436:13
[INFO] [stdout]      |
[INFO] [stdout] 1436 |         let mut domain = String::new();
[INFO] [stdout]      |             ----^^^^^^
[INFO] [stdout]      |             |
[INFO] [stdout]      |             help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]     --> src/index.rs:1437:13
[INFO] [stdout]      |
[INFO] [stdout] 1437 |         let mut number_of_scaffolds = 0usize;
[INFO] [stdout]      |             ----^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]      |             |
[INFO] [stdout]      |             help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]     --> src/index.rs:1438:13
[INFO] [stdout]      |
[INFO] [stdout] 1438 |         let mut number_of_contigs = 0usize;
[INFO] [stdout]      |             ----^^^^^^^^^^^^^^^^^
[INFO] [stdout]      |             |
[INFO] [stdout]      |             help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]     --> src/index.rs:1439:13
[INFO] [stdout]      |
[INFO] [stdout] 1439 |         let mut total_length = 0usize;
[INFO] [stdout]      |             ----^^^^^^^^^^^^
[INFO] [stdout]      |             |
[INFO] [stdout]      |             help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]     --> src/index.rs:1440:13
[INFO] [stdout]      |
[INFO] [stdout] 1440 |         let mut percent_gaps = 0.0;
[INFO] [stdout]      |             ----^^^^^^^^^^^^
[INFO] [stdout]      |             |
[INFO] [stdout]      |             help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]     --> src/index.rs:1441:13
[INFO] [stdout]      |
[INFO] [stdout] 1441 |         let mut scaffold_n50 = 0usize;
[INFO] [stdout]      |             ----^^^^^^^^^^^^
[INFO] [stdout]      |             |
[INFO] [stdout]      |             help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]     --> src/index.rs:1442:13
[INFO] [stdout]      |
[INFO] [stdout] 1442 |         let mut contigs_n50 = 0usize;
[INFO] [stdout]      |             ----^^^^^^^^^^^
[INFO] [stdout]      |             |
[INFO] [stdout]      |             help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `summary_line` is assigned to, but never used
[INFO] [stdout]     --> src/index.rs:1429:13
[INFO] [stdout]      |
[INFO] [stdout] 1429 |         let mut summary_line = String::new();
[INFO] [stdout]      |             ^^^^^^^^^^^^^^^^
[INFO] [stdout]      |
[INFO] [stdout]      = note: consider using `_summary_line` instead
[INFO] [stdout]      = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `domain`
[INFO] [stdout]     --> src/index.rs:1436:13
[INFO] [stdout]      |
[INFO] [stdout] 1436 |         let mut domain = String::new();
[INFO] [stdout]      |             ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_domain`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `summary_line` is never read
[INFO] [stdout]     --> src/index.rs:1467:17
[INFO] [stdout]      |
[INFO] [stdout] 1467 |                 summary_line = line.trim().to_string();
[INFO] [stdout]      |                 ^^^^^^^^^^^^
[INFO] [stdout]      |
[INFO] [stdout]      = help: maybe it is overwritten before being read?
[INFO] [stdout]      = note: `#[warn(unused_assignments)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `rank_set`
[INFO] [stdout]   --> src/parse/lookup.rs:30:9
[INFO] [stdout]    |
[INFO] [stdout] 30 |     let rank_set: HashSet<&str> = HashSet::from_iter(RANKS.iter().cloned());
[INFO] [stdout]    |         ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_rank_set`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `higher_rank_set`
[INFO] [stdout]   --> src/parse/lookup.rs:31:9
[INFO] [stdout]    |
[INFO] [stdout] 31 |     let higher_rank_set: HashSet<&str> = HashSet::from_iter(HIGHER_RANKS.iter().cloned());
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_higher_rank_set`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `seq_name`, `bins`, `bin_count`, `last_bin`, `seq_length`, and `step` are never read
[INFO] [stdout]    --> src/bam.rs:131:5
[INFO] [stdout]     |
[INFO] [stdout] 130 | pub struct BinnedCov {
[INFO] [stdout]     |            --------- fields in this struct
[INFO] [stdout] 131 |     seq_name: String,
[INFO] [stdout]     |     ^^^^^^^^
[INFO] [stdout] 132 |     bins: Vec<f64>,
[INFO] [stdout]     |     ^^^^
[INFO] [stdout] 133 |     bin_count: usize,
[INFO] [stdout]     |     ^^^^^^^^^
[INFO] [stdout] 134 |     last_bin: usize,
[INFO] [stdout]     |     ^^^^^^^^
[INFO] [stdout] 135 |     seq_length: usize,
[INFO] [stdout]     |     ^^^^^^^^^^
[INFO] [stdout] 136 |     step: usize,
[INFO] [stdout]     |     ^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `BinnedCov` has derived impls for the traits `Debug` and `Clone`, but these are intentionally ignored during dead code analysis
[INFO] [stdout]     = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: multiple fields are never read
[INFO] [stdout]    --> src/index.rs:876:5
[INFO] [stdout]     |
[INFO] [stdout] 865 | struct BuscoResults {
[INFO] [stdout]     |        ------------ fields in this struct
[INFO] [stdout] ...
[INFO] [stdout] 876 |     n_markers: usize,
[INFO] [stdout]     |     ^^^^^^^^^
[INFO] [stdout] 877 |     domain: String,
[INFO] [stdout]     |     ^^^^^^
[INFO] [stdout] 878 |     #[serde(alias = "Number of scaffolds", deserialize_with = "string_or_usize")]
[INFO] [stdout] 879 |     number_of_scaffolds: usize,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 880 |     #[serde(alias = "Number of contigs", deserialize_with = "string_or_usize")]
[INFO] [stdout] 881 |     number_of_contigs: usize,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 882 |     #[serde(alias = "Total length", deserialize_with = "string_or_usize")]
[INFO] [stdout] 883 |     total_length: usize,
[INFO] [stdout]     |     ^^^^^^^^^^^^
[INFO] [stdout] 884 |     #[serde(alias = "Percent gaps", deserialize_with = "percent_string_or_f64")]
[INFO] [stdout] 885 |     percent_gaps: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^
[INFO] [stdout] 886 |     #[serde(alias = "Scaffold N50", deserialize_with = "string_or_usize")]
[INFO] [stdout] 887 |     scaffold_n50: usize,
[INFO] [stdout]     |     ^^^^^^^^^^^^
[INFO] [stdout] 888 |     #[serde(alias = "Contigs N50", deserialize_with = "string_or_usize")]
[INFO] [stdout] 889 |     contigs_n50: usize,
[INFO] [stdout]     |     ^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `BuscoResults` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `name`, `creation_date`, and `number_of_species` are never read
[INFO] [stdout]    --> src/index.rs:932:5
[INFO] [stdout]     |
[INFO] [stdout] 931 | struct BuscoLineageDataset {
[INFO] [stdout]     |        ------------------- fields in this struct
[INFO] [stdout] 932 |     name: String,
[INFO] [stdout]     |     ^^^^
[INFO] [stdout] 933 |     creation_date: String,
[INFO] [stdout]     |     ^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 937 |     number_of_species: usize,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `BuscoLineageDataset` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `hmmsearch`, `bbtools`, `metaeuk`, and `busco` are never read
[INFO] [stdout]    --> src/index.rs:942:5
[INFO] [stdout]     |
[INFO] [stdout] 940 | struct BuscoVersions {
[INFO] [stdout]     |        ------------- fields in this struct
[INFO] [stdout] 941 |     #[serde(deserialize_with = "numeric_or_string_to_string")]
[INFO] [stdout] 942 |     hmmsearch: String,
[INFO] [stdout]     |     ^^^^^^^^^
[INFO] [stdout] 943 |     #[serde(deserialize_with = "numeric_or_string_to_string")]
[INFO] [stdout] 944 |     bbtools: String,
[INFO] [stdout]     |     ^^^^^^^
[INFO] [stdout] 945 |     #[serde(deserialize_with = "numeric_or_string_to_string")]
[INFO] [stdout] 946 |     metaeuk: String,
[INFO] [stdout]     |     ^^^^^^^
[INFO] [stdout] 947 |     #[serde(deserialize_with = "numeric_or_string_to_string")]
[INFO] [stdout] 948 |     busco: String,
[INFO] [stdout]     |     ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `BuscoVersions` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `versions` is never read
[INFO] [stdout]    --> src/index.rs:967:5
[INFO] [stdout]     |
[INFO] [stdout] 964 | struct BuscoSummary {
[INFO] [stdout]     |        ------------ field in this struct
[INFO] [stdout] ...
[INFO] [stdout] 967 |     versions: BuscoVersions,
[INFO] [stdout]     |     ^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `BuscoSummary` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `seq_name`, `bins`, `bin_count`, `last_bin`, `seq_length`, and `step` are never read
[INFO] [stdout]    --> src/bam.rs:131:5
[INFO] [stdout]     |
[INFO] [stdout] 130 | pub struct BinnedCov {
[INFO] [stdout]     |            --------- fields in this struct
[INFO] [stdout] 131 |     seq_name: String,
[INFO] [stdout]     |     ^^^^^^^^
[INFO] [stdout] 132 |     bins: Vec<f64>,
[INFO] [stdout]     |     ^^^^
[INFO] [stdout] 133 |     bin_count: usize,
[INFO] [stdout]     |     ^^^^^^^^^
[INFO] [stdout] 134 |     last_bin: usize,
[INFO] [stdout]     |     ^^^^^^^^
[INFO] [stdout] 135 |     seq_length: usize,
[INFO] [stdout]     |     ^^^^^^^^^^
[INFO] [stdout] 136 |     step: usize,
[INFO] [stdout]     |     ^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `BinnedCov` has derived impls for the traits `Debug` and `Clone`, but these are intentionally ignored during dead code analysis
[INFO] [stdout]     = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: multiple fields are never read
[INFO] [stdout]    --> src/index.rs:876:5
[INFO] [stdout]     |
[INFO] [stdout] 865 | struct BuscoResults {
[INFO] [stdout]     |        ------------ fields in this struct
[INFO] [stdout] ...
[INFO] [stdout] 876 |     n_markers: usize,
[INFO] [stdout]     |     ^^^^^^^^^
[INFO] [stdout] 877 |     domain: String,
[INFO] [stdout]     |     ^^^^^^
[INFO] [stdout] 878 |     #[serde(alias = "Number of scaffolds", deserialize_with = "string_or_usize")]
[INFO] [stdout] 879 |     number_of_scaffolds: usize,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 880 |     #[serde(alias = "Number of contigs", deserialize_with = "string_or_usize")]
[INFO] [stdout] 881 |     number_of_contigs: usize,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 882 |     #[serde(alias = "Total length", deserialize_with = "string_or_usize")]
[INFO] [stdout] 883 |     total_length: usize,
[INFO] [stdout]     |     ^^^^^^^^^^^^
[INFO] [stdout] 884 |     #[serde(alias = "Percent gaps", deserialize_with = "percent_string_or_f64")]
[INFO] [stdout] 885 |     percent_gaps: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^
[INFO] [stdout] 886 |     #[serde(alias = "Scaffold N50", deserialize_with = "string_or_usize")]
[INFO] [stdout] 887 |     scaffold_n50: usize,
[INFO] [stdout]     |     ^^^^^^^^^^^^
[INFO] [stdout] 888 |     #[serde(alias = "Contigs N50", deserialize_with = "string_or_usize")]
[INFO] [stdout] 889 |     contigs_n50: usize,
[INFO] [stdout]     |     ^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `BuscoResults` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `name`, `creation_date`, and `number_of_species` are never read
[INFO] [stdout]    --> src/index.rs:932:5
[INFO] [stdout]     |
[INFO] [stdout] 931 | struct BuscoLineageDataset {
[INFO] [stdout]     |        ------------------- fields in this struct
[INFO] [stdout] 932 |     name: String,
[INFO] [stdout]     |     ^^^^
[INFO] [stdout] 933 |     creation_date: String,
[INFO] [stdout]     |     ^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 937 |     number_of_species: usize,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `BuscoLineageDataset` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `hmmsearch`, `bbtools`, `metaeuk`, and `busco` are never read
[INFO] [stdout]    --> src/index.rs:942:5
[INFO] [stdout]     |
[INFO] [stdout] 940 | struct BuscoVersions {
[INFO] [stdout]     |        ------------- fields in this struct
[INFO] [stdout] 941 |     #[serde(deserialize_with = "numeric_or_string_to_string")]
[INFO] [stdout] 942 |     hmmsearch: String,
[INFO] [stdout]     |     ^^^^^^^^^
[INFO] [stdout] 943 |     #[serde(deserialize_with = "numeric_or_string_to_string")]
[INFO] [stdout] 944 |     bbtools: String,
[INFO] [stdout]     |     ^^^^^^^
[INFO] [stdout] 945 |     #[serde(deserialize_with = "numeric_or_string_to_string")]
[INFO] [stdout] 946 |     metaeuk: String,
[INFO] [stdout]     |     ^^^^^^^
[INFO] [stdout] 947 |     #[serde(deserialize_with = "numeric_or_string_to_string")]
[INFO] [stdout] 948 |     busco: String,
[INFO] [stdout]     |     ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `BuscoVersions` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `versions` is never read
[INFO] [stdout]    --> src/index.rs:967:5
[INFO] [stdout]     |
[INFO] [stdout] 964 | struct BuscoSummary {
[INFO] [stdout]     |        ------------ field in this struct
[INFO] [stdout] ...
[INFO] [stdout] 967 |     versions: BuscoVersions,
[INFO] [stdout]     |     ^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `BuscoSummary` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 57s
[INFO] running `Command { std: "docker" "inspect" "adeb61c1413db6ed83b6ec185ad3672820cf79e235d0130a4dbc14aca773e623", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "adeb61c1413db6ed83b6ec185ad3672820cf79e235d0130a4dbc14aca773e623", kill_on_drop: false }`
[INFO] [stdout] adeb61c1413db6ed83b6ec185ad3672820cf79e235d0130a4dbc14aca773e623
