[INFO] fetching crate spdkit-surface 0.1.1... [INFO] checking spdkit-surface-0.1.1 against master#f2c70877a7dbc51cd98e2d5d25209b24d4a586d5 for pr-150097-1 [INFO] extracting crate spdkit-surface 0.1.1 into /workspace/builds/worker-6-tc1/source [INFO] started tweaking crates.io crate spdkit-surface 0.1.1 [INFO] finished tweaking crates.io crate spdkit-surface 0.1.1 [INFO] tweaked toml for crates.io crate spdkit-surface 0.1.1 written to /workspace/builds/worker-6-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate spdkit-surface 0.1.1 on toolchain f2c70877a7dbc51cd98e2d5d25209b24d4a586d5 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+f2c70877a7dbc51cd98e2d5d25209b24d4a586d5" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+f2c70877a7dbc51cd98e2d5d25209b24d4a586d5" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating crates.io index [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Locking 215 packages to latest compatible versions [INFO] [stderr] Adding generic-array v0.14.7 (available: v0.14.9) [INFO] [stderr] Adding handlebars v4.0.1 (available: v4.5.0) [INFO] [stderr] Adding rand v0.8.5 (available: v0.9.2) [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+f2c70877a7dbc51cd98e2d5d25209b24d4a586d5" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded approx v0.5.1 [INFO] [stderr] Downloaded vecfx v0.1.6 [INFO] [stderr] Downloaded nalgebra-macros v0.1.0 [INFO] [stderr] Downloaded rawpointer v0.2.1 [INFO] [stderr] Downloaded bimap v0.6.3 [INFO] [stderr] Downloaded grep v0.3.2 [INFO] [stderr] Downloaded extxyz v0.2.0 [INFO] [stderr] Downloaded grep-reader v0.1.3 [INFO] [stderr] Downloaded grep-printer v0.2.2 [INFO] [stderr] Downloaded minijinja v1.0.22 [INFO] [stderr] Downloaded pest v2.8.4 [INFO] [stderr] Downloaded deunicode v1.6.2 [INFO] [stderr] Downloaded nalgebra v0.31.4 [INFO] [stderr] Downloaded tera v1.20.1 [INFO] [stderr] Downloaded toml v0.7.8 [INFO] [stderr] Downloaded rand_distr v0.4.3 [INFO] [stderr] Downloaded grep-searcher v0.1.16 [INFO] [stderr] Downloaded phf v0.11.3 [INFO] [stderr] Downloaded octree v0.1.0 [INFO] [stderr] Downloaded gchemol-readwrite v0.1.12 [INFO] [stderr] Downloaded handlebars v4.0.1 [INFO] [stderr] Downloaded ropey v1.6.1 [INFO] [stderr] Downloaded gchemol-parser v0.4.6 [INFO] [stderr] Downloaded gchemol-neighbors v0.1.3 [INFO] [stderr] Downloaded parse-zoneinfo v0.3.1 [INFO] [stderr] Downloaded base64 v0.20.0 [INFO] [stderr] Downloaded gchemol v0.1.7 [INFO] [stderr] Downloaded signal-hook v0.3.18 [INFO] [stderr] Downloaded env_logger v0.10.2 [INFO] [stderr] Downloaded gchemol-lattice v0.1.2 [INFO] [stderr] Downloaded gchemol-core v0.1.7 [INFO] [stderr] Downloaded grep-printer v0.1.7 [INFO] [stderr] Downloaded grep-regex v0.1.14 [INFO] [stderr] Downloaded str_indices v0.4.4 [INFO] [stderr] Downloaded chrono-tz v0.9.0 [INFO] [stderr] Downloaded xmlparser v0.13.6 [INFO] [stderr] Downloaded roxmltree v0.18.1 [INFO] [stderr] Downloaded pest_meta v2.8.4 [INFO] [stderr] Downloaded pest_generator v2.8.4 [INFO] [stderr] Downloaded uom v0.33.0 [INFO] [stderr] Downloaded duct v0.13.7 [INFO] [stderr] Downloaded gchemol-geometry v0.1.1 [INFO] [stderr] Downloaded grep-cli v0.1.12 [INFO] [stderr] Downloaded encoding_rs_io v0.1.7 [INFO] [stderr] Downloaded grep-matcher v0.1.8 [INFO] [stderr] Downloaded quick-error v2.0.1 [INFO] [stderr] Downloaded phf_generator v0.11.3 [INFO] [stderr] Downloaded chrono-tz-build v0.3.0 [INFO] [stderr] Downloaded globset v0.4.18 [INFO] [stderr] Downloaded ignore v0.4.25 [INFO] [stderr] Downloaded humansize v2.1.3 [INFO] [stderr] Downloaded slug v0.1.6 [INFO] [stderr] Downloaded os_pipe v1.2.3 [INFO] [stderr] Downloaded sigchld v0.2.4 [INFO] [stderr] Downloaded shared_child v1.1.1 [INFO] [stderr] Downloaded is-terminal v0.4.17 [INFO] [stderr] Downloaded shell-escape v0.1.5 [INFO] [stderr] Downloaded gchemol-gut v0.4.4 [INFO] [stderr] Downloaded envy v0.4.2 [INFO] [stderr] Downloaded memmap2 v0.9.9 [INFO] [stderr] Downloaded grep v0.2.13 [INFO] [stderr] Downloaded lazy-regex-proc_macros v2.4.1 [INFO] [stderr] Downloaded lazy-regex v2.5.0 [INFO] [stderr] Downloaded phf_codegen v0.11.3 [INFO] [stderr] Downloaded globwalk v0.9.1 [INFO] [stderr] Downloaded pest_derive v2.8.4 [INFO] [stderr] Downloaded matrixmultiply v0.3.10 [INFO] [stderr] Downloaded wide v0.7.33 [INFO] [stderr] Downloaded simba v0.7.3 [INFO] [stderr] Downloaded ordered-float v3.9.2 [INFO] [stderr] Downloaded gchemol-graph v0.1.6 [INFO] [stderr] Downloaded anstyle-wincon v3.0.11 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:845e597a41426bbf2703be69acdb67d10b6de511142d05cba7bbe119c898b2c7" "/opt/rustwide/cargo-home/bin/cargo" "+f2c70877a7dbc51cd98e2d5d25209b24d4a586d5" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 848a8986d5a1731e3d156f667833d71ac91b2ee1c17fcf7aae546487ed8bf7da [INFO] running `Command { std: "docker" "start" "-a" "848a8986d5a1731e3d156f667833d71ac91b2ee1c17fcf7aae546487ed8bf7da", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "848a8986d5a1731e3d156f667833d71ac91b2ee1c17fcf7aae546487ed8bf7da", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "848a8986d5a1731e3d156f667833d71ac91b2ee1c17fcf7aae546487ed8bf7da", kill_on_drop: false }` [INFO] [stdout] 848a8986d5a1731e3d156f667833d71ac91b2ee1c17fcf7aae546487ed8bf7da [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:845e597a41426bbf2703be69acdb67d10b6de511142d05cba7bbe119c898b2c7" "/opt/rustwide/cargo-home/bin/cargo" "+f2c70877a7dbc51cd98e2d5d25209b24d4a586d5" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 62aec8889486a2c912a68ded621a0cd5cd3d2f71178e3e1a044826e243e9c3c4 [INFO] running `Command { std: "docker" "start" "-a" "62aec8889486a2c912a68ded621a0cd5cd3d2f71178e3e1a044826e243e9c3c4", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.104 [INFO] [stderr] Compiling libc v0.2.178 [INFO] [stderr] Compiling serde_core v1.0.228 [INFO] [stderr] Compiling serde v1.0.228 [INFO] [stderr] Checking aho-corasick v1.1.4 [INFO] [stderr] Compiling zerocopy v0.8.31 [INFO] [stderr] Checking log v0.4.29 [INFO] [stderr] Compiling zmij v1.0.7 [INFO] [stderr] Compiling memchr v2.7.6 [INFO] [stderr] Compiling serde_json v1.0.148 [INFO] [stderr] Checking itoa v1.0.17 [INFO] [stderr] Checking termcolor v1.4.1 [INFO] [stderr] Checking crossbeam-epoch v0.9.18 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Checking crossbeam-deque v0.8.6 [INFO] [stderr] Compiling quote v1.0.42 [INFO] [stderr] Checking hashbrown v0.16.1 [INFO] [stderr] Compiling syn v2.0.112 [INFO] [stderr] Checking regex-automata v0.4.13 [INFO] [stderr] Compiling cfg-if v1.0.4 [INFO] [stderr] Compiling signal-hook v0.3.18 [INFO] [stderr] Checking indexmap v2.12.1 [INFO] [stderr] Checking getrandom v0.2.16 [INFO] [stderr] Checking errno v0.3.14 [INFO] [stderr] Checking signal-hook-registry v1.4.8 [INFO] [stderr] Checking ppv-lite86 v0.2.21 [INFO] [stderr] Checking bytemuck v1.24.0 [INFO] [stderr] Compiling regex-syntax v0.8.8 [INFO] [stderr] Checking bstr v1.12.1 [INFO] [stderr] Compiling anyhow v1.0.100 [INFO] [stderr] Checking regex v1.12.2 [INFO] [stderr] Checking safe_arch v0.7.4 [INFO] [stderr] Checking os_pipe v1.2.3 [INFO] [stderr] Checking encoding_rs v0.8.35 [INFO] [stderr] Checking globset v0.4.18 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Checking grep-matcher v0.1.8 [INFO] [stderr] Checking anstyle-query v1.1.5 [INFO] [stderr] Compiling rustix v1.1.3 [INFO] [stderr] Checking winnow v0.5.40 [INFO] [stderr] Compiling rayon-core v1.13.0 [INFO] [stderr] Compiling siphasher v1.0.1 [INFO] [stderr] Checking anstream v0.6.21 [INFO] [stderr] Compiling phf_shared v0.11.3 [INFO] [stderr] Checking wide v0.7.33 [INFO] [stderr] Checking sigchld v0.2.4 [INFO] [stderr] Checking memmap2 v0.9.9 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking encoding_rs_io v0.1.7 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Checking powerfmt v0.2.0 [INFO] [stderr] Checking deranged v0.5.5 [INFO] [stderr] Checking clap_builder v4.5.53 [INFO] [stderr] Compiling serde_derive v1.0.228 [INFO] [stderr] Compiling clap_derive v4.5.49 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Checking grep-searcher v0.1.16 [INFO] [stderr] Checking num-rational v0.4.2 [INFO] [stderr] Checking shared_child v1.1.1 [INFO] [stderr] Checking getrandom v0.3.4 [INFO] [stderr] Checking itertools v0.10.5 [INFO] [stderr] Checking is-terminal v0.4.17 [INFO] [stderr] Checking time-core v0.1.6 [INFO] [stderr] Checking num-conv v0.1.0 [INFO] [stderr] Checking tempfile v3.24.0 [INFO] [stderr] Checking time v0.3.44 [INFO] [stderr] Checking rayon v1.11.0 [INFO] [stderr] Checking env_logger v0.10.2 [INFO] [stderr] Checking duct v0.13.7 [INFO] [stderr] Compiling ucd-trie v0.1.7 [INFO] [stderr] Checking shell-escape v0.1.5 [INFO] [stderr] Compiling phf v0.11.3 [INFO] [stderr] Checking grep-cli v0.1.12 [INFO] [stderr] Compiling pest v2.8.4 [INFO] [stderr] Checking grep-regex v0.1.14 [INFO] [stderr] Compiling indexmap v1.9.3 [INFO] [stderr] Checking base64 v0.20.0 [INFO] [stderr] Checking hashbrown v0.12.3 [INFO] [stderr] Checking clap v4.5.53 [INFO] [stderr] Checking chrono v0.4.42 [INFO] [stderr] Compiling parse-zoneinfo v0.3.1 [INFO] [stderr] Checking ignore v0.4.25 [INFO] [stderr] Compiling pest_meta v2.8.4 [INFO] [stderr] Checking minimal-lexical v0.2.1 [INFO] [stderr] Checking smallvec v1.15.1 [INFO] [stderr] Checking str_indices v0.4.4 [INFO] [stderr] Checking deunicode v1.6.2 [INFO] [stderr] Checking globwalk v0.9.1 [INFO] [stderr] Checking ropey v1.6.1 [INFO] [stderr] Checking slug v0.1.6 [INFO] [stderr] Checking rand_core v0.6.4 [INFO] [stderr] Checking toml_datetime v0.6.11 [INFO] [stderr] Checking num-complex v0.4.6 [INFO] [stderr] Checking serde_spanned v0.6.9 [INFO] [stderr] Checking grep-printer v0.2.2 [INFO] [stderr] Checking toml_edit v0.19.15 [INFO] [stderr] Checking grep-printer v0.1.7 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Checking simba v0.7.3 [INFO] [stderr] Compiling pest_generator v2.8.4 [INFO] [stderr] Checking grep v0.3.2 [INFO] [stderr] Checking petgraph v0.6.5 [INFO] [stderr] Checking grep-reader v0.1.3 [INFO] [stderr] Checking grep v0.2.13 [INFO] [stderr] Compiling lazy-regex-proc_macros v2.4.1 [INFO] [stderr] Checking envy v0.4.2 [INFO] [stderr] Checking ordered-float v3.9.2 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Compiling pest_derive v2.8.4 [INFO] [stderr] Checking bimap v0.6.3 [INFO] [stderr] Checking nom v7.1.3 [INFO] [stderr] Checking humansize v2.1.3 [INFO] [stderr] Checking toml v0.7.8 [INFO] [stderr] Checking quick-error v2.0.1 [INFO] [stderr] Compiling phf_generator v0.11.3 [INFO] [stderr] Checking xmlparser v0.13.6 [INFO] [stderr] Checking handlebars v4.0.1 [INFO] [stderr] Checking lazy-regex v2.5.0 [INFO] [stderr] Compiling phf_codegen v0.11.3 [INFO] [stderr] Checking extxyz v0.2.0 [INFO] [stderr] Compiling chrono-tz-build v0.3.0 [INFO] [stderr] Checking roxmltree v0.18.1 [INFO] [stderr] Checking gchemol-gut v0.4.4 [INFO] [stderr] Checking minijinja v1.0.22 [INFO] [stderr] Checking uom v0.33.0 [INFO] [stderr] Compiling chrono-tz v0.9.0 [INFO] [stderr] Checking gchemol-graph v0.1.6 [INFO] [stderr] Checking gchemol-parser v0.4.6 [INFO] [stderr] Checking nalgebra v0.31.4 [INFO] [stderr] Checking tera v1.20.1 [INFO] [stderr] Checking vecfx v0.1.6 [INFO] [stderr] Checking gchemol-lattice v0.1.2 [INFO] [stderr] Checking octree v0.1.0 [INFO] [stderr] Checking gchemol-geometry v0.1.1 [INFO] [stderr] Checking gchemol-neighbors v0.1.3 [INFO] [stderr] Checking gchemol-core v0.1.7 [INFO] [stderr] Checking gchemol-readwrite v0.1.12 [INFO] [stderr] Checking gchemol v0.1.7 [INFO] [stderr] Checking spdkit-surface v0.1.1 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `gchemol::Lattice` [INFO] [stdout] --> src/layers.rs:4:5 [INFO] [stdout] | [INFO] [stdout] 4 | use gchemol::Lattice; [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `gchemol::prelude::*` [INFO] [stdout] --> src/lib.rs:11:13 [INFO] [stdout] | [INFO] [stdout] 11 | pub use gchemol::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `gchemol::Lattice` [INFO] [stdout] --> src/layers.rs:4:5 [INFO] [stdout] | [INFO] [stdout] 4 | use gchemol::Lattice; [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `gchemol::Atom::label`: use get_label instead [INFO] [stdout] --> src/layers.rs:17:33 [INFO] [stdout] | [INFO] [stdout] 17 | mol.atoms().find(|(_, a)| a.label() == format!("{i}")).is_some() [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `gchemol::Atom::label`: use get_label instead [INFO] [stdout] --> src/layers.rs:28:32 [INFO] [stdout] | [INFO] [stdout] 28 | mol.atoms().map(|(_, a)| a.label().parse().unwrap()).collect() [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `n_probes` [INFO] [stdout] --> src/probe.rs:71:59 [INFO] [stdout] | [INFO] [stdout] 71 | pub fn probe_surface_atoms(mol: &Molecule, r_cutoff: f64, n_probes: usize) -> Result> { [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_n_probes` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `gchemol::Atom::label`: use get_label instead [INFO] [stdout] --> src/layers.rs:17:33 [INFO] [stdout] | [INFO] [stdout] 17 | mol.atoms().find(|(_, a)| a.label() == format!("{i}")).is_some() [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `gchemol::Atom::label`: use get_label instead [INFO] [stdout] --> src/layers.rs:28:32 [INFO] [stdout] | [INFO] [stdout] 28 | mol.atoms().map(|(_, a)| a.label().parse().unwrap()).collect() [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `n_probes` [INFO] [stdout] --> src/probe.rs:71:59 [INFO] [stdout] | [INFO] [stdout] 71 | pub fn probe_surface_atoms(mol: &Molecule, r_cutoff: f64, n_probes: usize) -> Result> { [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_n_probes` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 10s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: gchemol-core v0.1.7 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1` [INFO] running `Command { std: "docker" "inspect" "62aec8889486a2c912a68ded621a0cd5cd3d2f71178e3e1a044826e243e9c3c4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "62aec8889486a2c912a68ded621a0cd5cd3d2f71178e3e1a044826e243e9c3c4", kill_on_drop: false }` [INFO] [stdout] 62aec8889486a2c912a68ded621a0cd5cd3d2f71178e3e1a044826e243e9c3c4