[INFO] cloning repository https://github.com/lgi-onehealth/phcue-qc [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/lgi-onehealth/phcue-qc" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Flgi-onehealth%2Fphcue-qc", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Flgi-onehealth%2Fphcue-qc'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] d5810d5e1714d5b70501b507a4fc9ed96e8c50d5 [INFO] building lgi-onehealth/phcue-qc against try#23647e694de8d0904848ad068b2e0ec2dd098c37+target=wasm32-wasip1 for pr-149868 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Flgi-onehealth%2Fphcue-qc" "/workspace/builds/worker-4-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc2/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/lgi-onehealth/phcue-qc [INFO] finished tweaking git repo https://github.com/lgi-onehealth/phcue-qc [INFO] tweaked toml for git repo https://github.com/lgi-onehealth/phcue-qc written to /workspace/builds/worker-4-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/lgi-onehealth/phcue-qc on toolchain 23647e694de8d0904848ad068b2e0ec2dd098c37 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+23647e694de8d0904848ad068b2e0ec2dd098c37" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/lgi-onehealth/phcue-qc already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+23647e694de8d0904848ad068b2e0ec2dd098c37" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:845e597a41426bbf2703be69acdb67d10b6de511142d05cba7bbe119c898b2c7" "/opt/rustwide/cargo-home/bin/cargo" "+23647e694de8d0904848ad068b2e0ec2dd098c37" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 840e4cc095e7d2ee7ee64387734c372f86d4b886fcff2fab43e67ce7b779223b [INFO] running `Command { std: "docker" "start" "-a" "840e4cc095e7d2ee7ee64387734c372f86d4b886fcff2fab43e67ce7b779223b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "840e4cc095e7d2ee7ee64387734c372f86d4b886fcff2fab43e67ce7b779223b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "840e4cc095e7d2ee7ee64387734c372f86d4b886fcff2fab43e67ce7b779223b", kill_on_drop: false }` [INFO] [stdout] 840e4cc095e7d2ee7ee64387734c372f86d4b886fcff2fab43e67ce7b779223b [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:845e597a41426bbf2703be69acdb67d10b6de511142d05cba7bbe119c898b2c7" "/opt/rustwide/cargo-home/bin/cargo" "+23647e694de8d0904848ad068b2e0ec2dd098c37" "build" "--frozen" "--message-format=json" "--target" "wasm32-wasip1", kill_on_drop: false }` [INFO] [stdout] 5cab123c83238c90d414597a8853ff9b37f576edb7b2d658bcf8be3c67ae4d35 [INFO] running `Command { std: "docker" "start" "-a" "5cab123c83238c90d414597a8853ff9b37f576edb7b2d658bcf8be3c67ae4d35", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.40 [INFO] [stderr] Compiling unicode-ident v1.0.1 [INFO] [stderr] Compiling quote v1.0.20 [INFO] [stderr] Compiling syn v1.0.98 [INFO] [stderr] Compiling libz-sys v1.1.8 [INFO] [stderr] Compiling crc32fast v1.3.2 [INFO] [stderr] Compiling libc v0.2.126 [INFO] [stderr] Compiling lz4-sys v1.9.3 [INFO] [stderr] Compiling once_cell v1.13.0 [INFO] [stderr] Compiling serde_derive v1.0.139 [INFO] [stderr] Compiling crossbeam-utils v0.8.10 [INFO] [stderr] Compiling miniz_oxide v0.5.3 [INFO] [stderr] Compiling indexmap v1.9.1 [INFO] [stderr] Compiling hashbrown v0.12.2 [INFO] [stderr] Compiling serde v1.0.139 [INFO] [stderr] Compiling arrayvec v0.4.12 [INFO] [stderr] Compiling num-traits v0.2.15 [INFO] [stderr] Compiling flate2 v1.0.24 [INFO] [stderr] Compiling serde_json v1.0.82 [INFO] [stderr] Compiling heck v0.4.0 [INFO] [stderr] Compiling os_str_bytes v6.1.0 [INFO] [stderr] Compiling nodrop v0.1.14 [INFO] [stderr] Compiling smallvec v1.9.0 [INFO] [stderr] Compiling clap_lex v0.2.4 [INFO] [stderr] Compiling parking_lot_core v0.9.3 [INFO] [stderr] Compiling crossbeam-channel v0.5.5 [INFO] [stderr] Compiling nom v7.1.1 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling itoa v1.0.2 [INFO] [stderr] Compiling ryu v1.0.10 [INFO] [stderr] Compiling textwrap v0.15.0 [INFO] [stderr] Compiling itoa v0.4.8 [INFO] [stderr] Compiling num-format v0.4.0 [INFO] [stderr] Compiling dashmap v5.3.4 [INFO] [stderr] Compiling find_peaks v0.1.5 [INFO] [stderr] Compiling hdrhistogram v7.5.0 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Compiling clap_derive v3.2.7 [INFO] [stderr] Compiling clap v3.2.10 [INFO] [stderr] Compiling lz4 v1.23.3 [INFO] [stderr] Compiling fastq v0.6.0 [INFO] [stderr] Compiling phcue-qc v0.3.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused variable: `min_count` [INFO] [stdout] --> src/main.rs:96:61 [INFO] [stdout] | [INFO] [stdout] 96 | fn get_depth_coverage(&mut self, hist: &Histogram, min_count: &u64) { [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_min_count` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: linking with `rust-lld` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "rust-lld" "-flavor" "wasm" "--export" "__main_void" "-z" "stack-size=1048576" "--stack-first" "--no-demangle" "/lib/rustlib/wasm32-wasip1/lib/self-contained/crt1-command.o" "<17 object files omitted>" "/lib/rustlib/wasm32-wasip1/lib/libpanic_abort-*.rlib" "/opt/rustwide/target/wasm32-wasip1/debug/deps/{libserde_json-2369a8589c2c734e,libryu-532612ec2f9fcdf5,libitoa-e6d4309df0be0b3b,libfind_peaks-e9da5090a20d7e73,libserde-377e729ae5f9a947,libclap-036d94aa47378b35,libatty-3242e974e54baef7,libstrsim-39ec6cd5a47c2372,libtermcolor-8d7030a2f5e002ea,libtextwrap-bd870ef01292318d,libindexmap-82f4e62e53b34840,libclap_lex-8448467b51d57035,libos_str_bytes-ff3d87539e46df31,libbitflags-15e3d67e03629ffa,libnum_format-1c89ec05f6e5e07e,libitoa-46abc3af1b6d43cd,libarrayvec-96426b50ac730af3,libnodrop-85ca6e89abfe5956,libhdrhistogram-c323af4e78f709a1,libcrossbeam_channel-7507166e69d0a139,libcrossbeam_utils-4163518a4f072fa4,libonce_cell-2fa27379a2fe52ad,libbase64-4ed240cdd589693c,libbyteorder-f00db367bf6f80f8,libnum_traits-87d9806b9939f031,libnom-8cb6cf2dd4a5ea61,libfastq-b05a75c3dd85b4db,libflate2-b0d0c3cdebd0933f,liblibz_sys-cae13dc59650fe39,libcrc32fast-f0a61590867b47c0,liblz4-25838e33b306b5bb,liblz4_sys-bf4c30656a531362,liblibc-69985efa0b34734f,libmemchr-b559ff6c4bd2cfb8,libdashmap-8ad06fe71cc6f595,liblock_api-4daf4d4a39843e5d,libscopeguard-969e7c3c4435a7ba,libparking_lot_core-6842fcbd66cd105f,libcfg_if-50b02a9e3502ecf2,libsmallvec-b56c233bdbf92a8b,libhashbrown-75ae0614cee6ce2d}.rlib" "/lib/rustlib/wasm32-wasip1/lib/{libstd-*,libwasi-*,libcfg_if-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,liblibc-*}.rlib" "-l" "c" "/lib/rustlib/wasm32-wasip1/lib/{librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-L" "/opt/rustwide/target/wasm32-wasip1/debug/build/libz-sys-114a9682951f2188/out/lib" "-L" "/opt/rustwide/target/wasm32-wasip1/debug/build/lz4-sys-8596629f3ea1a361/out" "-L" "/lib/rustlib/wasm32-wasip1/lib/self-contained" "-o" "/opt/rustwide/target/wasm32-wasip1/debug/deps/phcue_qc-ff7e22a97d97c366.wasm" "--gc-sections" "-O0" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblibz_sys-cae13dc59650fe39.rlib: archive member 'adler32.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblibz_sys-cae13dc59650fe39.rlib: archive member 'compress.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblibz_sys-cae13dc59650fe39.rlib: archive member 'crc32.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblibz_sys-cae13dc59650fe39.rlib: archive member 'deflate.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblibz_sys-cae13dc59650fe39.rlib: archive member 'infback.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblibz_sys-cae13dc59650fe39.rlib: archive member 'inffast.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblibz_sys-cae13dc59650fe39.rlib: archive member 'inflate.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblibz_sys-cae13dc59650fe39.rlib: archive member 'inftrees.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblibz_sys-cae13dc59650fe39.rlib: archive member 'trees.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblibz_sys-cae13dc59650fe39.rlib: archive member 'uncompr.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblibz_sys-cae13dc59650fe39.rlib: archive member 'zutil.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblz4_sys-bf4c30656a531362.rlib: archive member 'lz4.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblz4_sys-bf4c30656a531362.rlib: archive member 'lz4frame.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblz4_sys-bf4c30656a531362.rlib: archive member 'lz4hc.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblz4_sys-bf4c30656a531362.rlib: archive member 'xxhash.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: error: /opt/rustwide/target/wasm32-wasip1/debug/deps/phcue_qc-ff7e22a97d97c366.phcue_qc.5d051fd2643036df-cgu.03.rcgu.o: undefined symbol: LZ4F_decompress [INFO] [stdout] rust-lld: error: /opt/rustwide/target/wasm32-wasip1/debug/deps/libflate2-b0d0c3cdebd0933f.rlib(flate2-b0d0c3cdebd0933f.flate2.f89b710cb464350d-cgu.0.rcgu.o): undefined symbol: inflate [INFO] [stdout] rust-lld: error: /opt/rustwide/target/wasm32-wasip1/debug/deps/libflate2-b0d0c3cdebd0933f.rlib(flate2-b0d0c3cdebd0933f.flate2.f89b710cb464350d-cgu.0.rcgu.o): undefined symbol: inflateEnd [INFO] [stdout] rust-lld: error: /opt/rustwide/target/wasm32-wasip1/debug/deps/libflate2-b0d0c3cdebd0933f.rlib(flate2-b0d0c3cdebd0933f.flate2.f89b710cb464350d-cgu.1.rcgu.o): undefined symbol: inflateInit2_ [INFO] [stdout] rust-lld: error: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblz4-25838e33b306b5bb.rlib(lz4-25838e33b306b5bb.lz4.d451f929236397f2-cgu.0.rcgu.o): undefined symbol: LZ4F_createDecompressionContext [INFO] [stdout] rust-lld: error: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblz4-25838e33b306b5bb.rlib(lz4-25838e33b306b5bb.lz4.d451f929236397f2-cgu.0.rcgu.o): undefined symbol: LZ4F_isError [INFO] [stdout] rust-lld: error: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblz4-25838e33b306b5bb.rlib(lz4-25838e33b306b5bb.lz4.d451f929236397f2-cgu.0.rcgu.o): undefined symbol: LZ4F_getErrorName [INFO] [stdout] rust-lld: error: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblz4-25838e33b306b5bb.rlib(lz4-25838e33b306b5bb.lz4.d451f929236397f2-cgu.0.rcgu.o): undefined symbol: LZ4F_freeDecompressionContext [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `phcue-qc` (bin "phcue-qc") due to 1 previous error; 1 warning emitted [INFO] running `Command { std: "docker" "inspect" "5cab123c83238c90d414597a8853ff9b37f576edb7b2d658bcf8be3c67ae4d35", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5cab123c83238c90d414597a8853ff9b37f576edb7b2d658bcf8be3c67ae4d35", kill_on_drop: false }` [INFO] [stdout] 5cab123c83238c90d414597a8853ff9b37f576edb7b2d658bcf8be3c67ae4d35