[INFO] cloning repository https://github.com/genomicsoup/simmr [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/genomicsoup/simmr" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fgenomicsoup%2Fsimmr", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fgenomicsoup%2Fsimmr'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 555a88cf1a642670448f6c3a99fbfd4c9c951683 [INFO] building genomicsoup/simmr against try#23647e694de8d0904848ad068b2e0ec2dd098c37+target=wasm32-wasip1 for pr-149868 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fgenomicsoup%2Fsimmr" "/workspace/builds/worker-5-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc2/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/genomicsoup/simmr [INFO] finished tweaking git repo https://github.com/genomicsoup/simmr [INFO] tweaked toml for git repo https://github.com/genomicsoup/simmr written to /workspace/builds/worker-5-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/genomicsoup/simmr on toolchain 23647e694de8d0904848ad068b2e0ec2dd098c37 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+23647e694de8d0904848ad068b2e0ec2dd098c37" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/genomicsoup/simmr already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+23647e694de8d0904848ad068b2e0ec2dd098c37" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] warning: virtual workspace defaulting to `resolver = "1"` despite one or more workspace members being on edition 2021 which implies `resolver = "2"` [INFO] [stderr] | [INFO] [stderr] = note: to keep the current resolver, specify `workspace.resolver = "1"` in the workspace root's manifest [INFO] [stderr] = note: to use the edition 2021 resolver, specify `workspace.resolver = "2"` in the workspace root's manifest [INFO] [stderr] = note: for more details see https://doc.rust-lang.org/cargo/reference/resolver.html#resolver-versions [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:845e597a41426bbf2703be69acdb67d10b6de511142d05cba7bbe119c898b2c7" "/opt/rustwide/cargo-home/bin/cargo" "+23647e694de8d0904848ad068b2e0ec2dd098c37" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] d3d284611ff0d5af5a288b25d7a3285ec7d55631200cdcb01b835411aa03b0fa [INFO] running `Command { std: "docker" "start" "-a" "d3d284611ff0d5af5a288b25d7a3285ec7d55631200cdcb01b835411aa03b0fa", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "d3d284611ff0d5af5a288b25d7a3285ec7d55631200cdcb01b835411aa03b0fa", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d3d284611ff0d5af5a288b25d7a3285ec7d55631200cdcb01b835411aa03b0fa", kill_on_drop: false }` [INFO] [stdout] d3d284611ff0d5af5a288b25d7a3285ec7d55631200cdcb01b835411aa03b0fa [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:845e597a41426bbf2703be69acdb67d10b6de511142d05cba7bbe119c898b2c7" "/opt/rustwide/cargo-home/bin/cargo" "+23647e694de8d0904848ad068b2e0ec2dd098c37" "build" "--frozen" "--message-format=json" "--target" "wasm32-wasip1", kill_on_drop: false }` [INFO] [stdout] 5870ec2780637a66b214446bfe025970eeae4179aada0d25c62f7eb2e117c66a [INFO] running `Command { std: "docker" "start" "-a" "5870ec2780637a66b214446bfe025970eeae4179aada0d25c62f7eb2e117c66a", kill_on_drop: false }` [INFO] [stderr] warning: virtual workspace defaulting to `resolver = "1"` despite one or more workspace members being on edition 2021 which implies `resolver = "2"` [INFO] [stderr] | [INFO] [stderr] = note: to keep the current resolver, specify `workspace.resolver = "1"` in the workspace root's manifest [INFO] [stderr] = note: to use the edition 2021 resolver, specify `workspace.resolver = "2"` in the workspace root's manifest [INFO] [stderr] = note: for more details see https://doc.rust-lang.org/cargo/reference/resolver.html#resolver-versions [INFO] [stderr] Compiling proc-macro2 v1.0.39 [INFO] [stderr] Compiling unicode-ident v1.0.1 [INFO] [stderr] Compiling syn v1.0.96 [INFO] [stderr] Compiling crossbeam-utils v0.8.15 [INFO] [stderr] Compiling libc v0.2.126 [INFO] [stderr] Compiling miniz_oxide v0.5.3 [INFO] [stderr] Compiling cc v1.0.73 [INFO] [stderr] Compiling pkg-config v0.3.25 [INFO] [stderr] Compiling lexical-util v0.8.5 [INFO] [stderr] Compiling indexmap v1.8.2 [INFO] [stderr] Compiling serde_derive v1.0.137 [INFO] [stderr] Compiling libm v0.2.2 [INFO] [stderr] Compiling flate2 v1.0.24 [INFO] [stderr] Compiling once_cell v1.12.0 [INFO] [stderr] Compiling crossbeam-channel v0.5.8 [INFO] [stderr] Compiling hashbrown v0.11.2 [INFO] [stderr] Compiling serde v1.0.137 [INFO] [stderr] Compiling getrandom v0.2.7 [INFO] [stderr] Compiling quote v1.0.18 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling num-traits v0.2.15 [INFO] [stderr] Compiling bytes v1.1.0 [INFO] [stderr] Compiling memoffset v0.8.0 [INFO] [stderr] Compiling noodles-bgzf v0.22.0 [INFO] [stderr] Compiling rand_core v0.6.3 [INFO] [stderr] Compiling lexical-write-integer v0.8.5 [INFO] [stderr] Compiling lexical-parse-integer v0.8.6 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Compiling crossbeam-epoch v0.9.14 [INFO] [stderr] Compiling ppv-lite86 v0.2.16 [INFO] [stderr] Compiling noodles-core v0.11.0 [INFO] [stderr] Compiling lzma-sys v0.1.19 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Compiling lexical-parse-float v0.8.5 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling lexical-write-float v0.8.5 [INFO] [stderr] Compiling tracing-core v0.1.27 [INFO] [stderr] Compiling bit-vec v0.6.3 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling lexical-core v0.8.5 [INFO] [stderr] Compiling noodles-csi v0.19.0 [INFO] [stderr] Compiling noodles-fasta v0.23.0 [INFO] [stderr] Compiling bitflags v2.3.1 [INFO] [stderr] Compiling heck v0.4.0 [INFO] [stderr] Compiling os_str_bytes v6.1.0 [INFO] [stderr] Compiling rayon-core v1.11.0 [INFO] [stderr] Compiling clap_lex v0.2.2 [INFO] [stderr] Compiling noodles-sam v0.31.0 [INFO] [stderr] Compiling tracing-log v0.1.3 [INFO] [stderr] Compiling crossbeam-deque v0.8.3 [INFO] [stderr] Compiling sharded-slab v0.1.4 [INFO] [stderr] Compiling thread_local v1.1.4 [INFO] [stderr] Compiling num_cpus v1.15.0 [INFO] [stderr] Compiling ansi_term v0.12.1 [INFO] [stderr] Compiling either v1.7.0 [INFO] [stderr] Compiling strsim v0.10.0 [INFO] [stderr] Compiling safemem v0.3.3 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling regex-automata v0.1.10 [INFO] [stderr] Compiling termcolor v1.1.3 [INFO] [stderr] Compiling textwrap v0.15.0 [INFO] [stderr] Compiling smallvec v1.8.0 [INFO] [stderr] Compiling buf_redux v0.8.4 [INFO] [stderr] Compiling tracing-subscriber v0.3.11 [INFO] [stderr] Compiling bzip2 v0.4.3 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling csv-core v0.1.10 [INFO] [stderr] Compiling itoa v0.4.8 [INFO] [stderr] Compiling bytecount v0.6.3 [INFO] [stderr] Compiling ryu v1.0.10 [INFO] [stderr] Compiling itertools v0.10.3 [INFO] [stderr] Compiling uuid v1.1.2 [INFO] [stderr] Compiling streaming-stats v0.2.3 [INFO] [stderr] Compiling noodles-bam v0.34.0 [INFO] [stderr] Compiling rayon v1.7.0 [INFO] [stderr] Compiling noodles v0.40.0 [INFO] [stderr] Compiling hex v0.4.3 [INFO] [stderr] Compiling tracing-attributes v0.1.21 [INFO] [stderr] Compiling clap_derive v3.2.7 [INFO] [stderr] Compiling xz2 v0.1.7 [INFO] [stderr] Compiling needletail v0.4.1 [INFO] [stderr] Compiling tracing v0.1.35 [INFO] [stderr] Compiling clap v3.2.11 [INFO] [stderr] Compiling bincode v1.3.3 [INFO] [stderr] Compiling bstr v0.2.17 [INFO] [stderr] Compiling shared v0.1.0 (/opt/rustwide/workdir/shared) [INFO] [stdout] warning: unused macro definition: `create_mask` [INFO] [stdout] --> shared/src/encoding.rs:15:14 [INFO] [stdout] | [INFO] [stdout] 15 | macro_rules! create_mask { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_macros)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused macro definition: `set_bits` [INFO] [stdout] --> shared/src/encoding.rs:37:14 [INFO] [stdout] | [INFO] [stdout] 37 | macro_rules! set_bits { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused macro definition: `extract_bits` [INFO] [stdout] --> shared/src/encoding.rs:53:14 [INFO] [stdout] | [INFO] [stdout] 53 | macro_rules! extract_bits { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling csv v1.1.6 [INFO] [stderr] Compiling simmrd v0.1.0 (/opt/rustwide/workdir/simmrd) [INFO] [stdout] warning: unused imports: `Gamma`, `Normal`, and `Uniform` [INFO] [stdout] --> simmrd/src/main.rs:24:32 [INFO] [stdout] | [INFO] [stdout] 24 | use rand_distr::{Distribution, Gamma, Normal, Uniform, WeightedAliasIndex}; [INFO] [stdout] | ^^^^^ ^^^^^^ ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling simmr v0.1.0 (/opt/rustwide/workdir/simmr) [INFO] [stdout] warning: unused variable: `cigar_ndx` [INFO] [stdout] --> simmrd/src/alignment.rs:205:14 [INFO] [stdout] | [INFO] [stdout] 205 | let (cigar_ndx, cigar_char) = cigar_iter.peek().unwrap(); [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_cigar_ndx` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> simmrd/src/alignment.rs:285:9 [INFO] [stdout] | [INFO] [stdout] 285 | let mut invalid_ref_kmers: u32 = 0; [INFO] [stdout] | ----^^^^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> simmrd/src/alignment.rs:286:9 [INFO] [stdout] | [INFO] [stdout] 286 | let mut invalid_query_kmers: u32 = 0; [INFO] [stdout] | ----^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> simmrd/src/alignment.rs:346:13 [INFO] [stdout] | [INFO] [stdout] 346 | let mut kmer_counts = kmer_map.entry(ref_kmer_encoded).or_default(); [INFO] [stdout] | ----^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `invalid_ref_kmers` [INFO] [stdout] --> simmrd/src/alignment.rs:285:9 [INFO] [stdout] | [INFO] [stdout] 285 | let mut invalid_ref_kmers: u32 = 0; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_invalid_ref_kmers` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `invalid_query_kmers` [INFO] [stdout] --> simmrd/src/alignment.rs:286:9 [INFO] [stdout] | [INFO] [stdout] 286 | let mut invalid_query_kmers: u32 = 0; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_invalid_query_kmers` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `e` [INFO] [stdout] --> simmrd/src/alignment.rs:326:17 [INFO] [stdout] | [INFO] [stdout] 326 | Err(e) => { [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_e` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `e` [INFO] [stdout] --> simmrd/src/alignment.rs:339:17 [INFO] [stdout] | [INFO] [stdout] 339 | Err(e) => { [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_e` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `i` [INFO] [stdout] --> simmrd/src/probability.rs:29:10 [INFO] [stdout] | [INFO] [stdout] 29 | for (i, (refs, alts)) in kmer_map.into_iter().enumerate() { [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_i` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> simmrd/src/main.rs:33:9 [INFO] [stdout] | [INFO] [stdout] 33 | let mut kmer_map: Arc> = [INFO] [stdout] | ----^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unreachable pattern [INFO] [stdout] --> simmrd/src/main.rs:497:9 [INFO] [stdout] | [INFO] [stdout] 497 | _ => { [INFO] [stdout] | ^ no value can reach this [INFO] [stdout] | [INFO] [stdout] note: multiple earlier patterns match some of the same values [INFO] [stdout] --> simmrd/src/main.rs:497:9 [INFO] [stdout] | [INFO] [stdout] 495 | cli::Command::Generate(c) => generate_simulation_distributions(&c), [INFO] [stdout] | ------------------------- matches some of the same values [INFO] [stdout] 496 | cli::Command::Simulate(c) => simulate_data(&c), [INFO] [stdout] | ------------------------- matches some of the same values [INFO] [stdout] 497 | _ => { [INFO] [stdout] | ^ collectively making this unreachable [INFO] [stdout] = note: `#[warn(unreachable_patterns)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `serialize_alignments_to_path` is never used [INFO] [stdout] --> simmrd/src/alignment.rs:364:8 [INFO] [stdout] | [INFO] [stdout] 364 | pub fn serialize_alignments_to_path( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `deserialize_alignments_from_path` is never used [INFO] [stdout] --> simmrd/src/alignment.rs:391:8 [INFO] [stdout] | [INFO] [stdout] 391 | pub fn deserialize_alignments_from_path(filepath: &Path) -> Result, String> { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `scotts_rule` is never used [INFO] [stdout] --> simmrd/src/probability.rs:70:8 [INFO] [stdout] | [INFO] [stdout] 70 | pub fn scotts_rule(data: &[u8]) -> usize { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `abundance_profiles::base::coverage` [INFO] [stdout] --> simmr/src/abundance_profiles/uniform.rs:7:13 [INFO] [stdout] | [INFO] [stdout] 7 | use crate::{abundance_profiles::base::coverage, genome}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `crate::util` [INFO] [stdout] --> simmr/src/error_profiles/custom_long.rs:20:5 [INFO] [stdout] | [INFO] [stdout] 20 | use crate::util; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rand::prelude::SliceRandom` [INFO] [stdout] --> simmr/src/error_profiles/custom_short.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use rand::prelude::SliceRandom; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Gamma` [INFO] [stdout] --> simmr/src/error_profiles/custom_short.rs:12:32 [INFO] [stdout] | [INFO] [stdout] 12 | use rand_distr::{Distribution, Gamma, Normal, Uniform, WeightedAliasIndex}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `stats::stddev` [INFO] [stdout] --> simmr/src/error_profiles/custom_short.rs:13:5 [INFO] [stdout] | [INFO] [stdout] 13 | use stats::stddev; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `crate::util` [INFO] [stdout] --> simmr/src/error_profiles/custom_short.rs:20:5 [INFO] [stdout] | [INFO] [stdout] 20 | use crate::util; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `self::custom_long::CustomLongErrorProfile` [INFO] [stdout] --> simmr/src/error_profiles/mod.rs:14:9 [INFO] [stdout] | [INFO] [stdout] 14 | pub use self::custom_long::CustomLongErrorProfile; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rand::rngs::StdRng` [INFO] [stdout] --> simmr/src/genome.rs:7:5 [INFO] [stdout] | [INFO] [stdout] 7 | use rand::rngs::StdRng; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rand::Rng` [INFO] [stdout] --> simmr/src/genome.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use rand::Rng; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rand::SeedableRng` [INFO] [stdout] --> simmr/src/genome.rs:9:5 [INFO] [stdout] | [INFO] [stdout] 9 | use rand::SeedableRng; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::fs::OpenOptions` [INFO] [stdout] --> simmr/src/simulate.rs:11:5 [INFO] [stdout] | [INFO] [stdout] 11 | use std::fs::OpenOptions; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unreachable expression [INFO] [stdout] --> simmr/src/error_profiles/custom_long.rs:169:13 [INFO] [stdout] | [INFO] [stdout] 165 | continue; [INFO] [stdout] | -------- any code following this expression is unreachable [INFO] [stdout] ... [INFO] [stdout] 169 | / loop { [INFO] [stdout] 170 | | let qs = rng.gen_range(0..70) as u8; [INFO] [stdout] 171 | | [INFO] [stdout] 172 | | if rng.gen::() <= gaussian(qs as f64, ¢ers, bandwidth) { [INFO] [stdout] ... | [INFO] [stdout] 176 | | } [INFO] [stdout] | |_____________^ unreachable expression [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unreachable_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unreachable expression [INFO] [stdout] --> simmr/src/error_profiles/custom_short.rs:444:9 [INFO] [stdout] | [INFO] [stdout] 352 | return scores; [INFO] [stdout] | ------------- any code following this expression is unreachable [INFO] [stdout] ... [INFO] [stdout] 444 | scores [INFO] [stdout] | ^^^^^^ unreachable expression [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::io::prelude` [INFO] [stdout] --> simmr/src/simulate.rs:12:5 [INFO] [stdout] | [INFO] [stdout] 12 | use std::io::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `num_genomes` [INFO] [stdout] --> simmr/src/abundance_profiles/custom.rs:23:9 [INFO] [stdout] | [INFO] [stdout] 23 | num_genomes: usize, [INFO] [stdout] | ^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_num_genomes` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `nreads` [INFO] [stdout] --> simmr/src/abundance_profiles/custom.rs:89:24 [INFO] [stdout] | [INFO] [stdout] 89 | .map(|(g, (nreads, abund))| { [INFO] [stdout] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_nreads` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `total_coverage` [INFO] [stdout] --> simmr/src/abundance_profiles/custom.rs:55:13 [INFO] [stdout] | [INFO] [stdout] 55 | let total_coverage = base::total_coverage( [INFO] [stdout] | ^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_total_coverage` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `nreads` [INFO] [stdout] --> simmr/src/abundance_profiles/uniform.rs:88:24 [INFO] [stdout] | [INFO] [stdout] 88 | .map(|(g, (nreads, abund))| { [INFO] [stdout] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_nreads` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `total_coverage` [INFO] [stdout] --> simmr/src/abundance_profiles/uniform.rs:54:13 [INFO] [stdout] | [INFO] [stdout] 54 | let total_coverage = base::total_coverage( [INFO] [stdout] | ^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_total_coverage` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unreachable pattern [INFO] [stdout] --> simmr/src/cli.rs:299:9 [INFO] [stdout] | [INFO] [stdout] 299 | _ => todo!(), [INFO] [stdout] | ^ no value can reach this [INFO] [stdout] | [INFO] [stdout] note: multiple earlier patterns match some of the same values [INFO] [stdout] --> simmr/src/cli.rs:299:9 [INFO] [stdout] | [INFO] [stdout] 231 | ErrorProfile::PerfectShort => Box::new(error_profiles::PerfectShortErrorProfile { [INFO] [stdout] | -------------------------- matches some of the same values [INFO] [stdout] ... [INFO] [stdout] 235 | ErrorProfile::MinimalShort => Box::new(error_profiles::MinimalShortErrorProfile { [INFO] [stdout] | -------------------------- matches some of the same values [INFO] [stdout] ... [INFO] [stdout] 254 | ErrorProfile::CustomShort => { [INFO] [stdout] | ------------------------- matches some of the same values [INFO] [stdout] ... [INFO] [stdout] 284 | ErrorProfile::PerfectLong => Box::new(error_profiles::PerfectLongErrorProfile {}), [INFO] [stdout] | ------------------------- matches some of the same values [INFO] [stdout] ... [INFO] [stdout] 299 | _ => todo!(), [INFO] [stdout] | ^ ...and 1 other patterns collectively make this unreachable [INFO] [stdout] = note: `#[warn(unreachable_patterns)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seed` [INFO] [stdout] --> simmr/src/error_profiles/custom_long.rs:51:31 [INFO] [stdout] | [INFO] [stdout] 51 | fn get_insert_size(&self, seed: Option) -> u16 { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_seed` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seed` [INFO] [stdout] --> simmr/src/error_profiles/custom_long.rs:55:38 [INFO] [stdout] | [INFO] [stdout] 55 | fn get_random_insert_size(&self, seed: Option) -> u16 { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_seed` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> simmr/src/error_profiles/custom_short.rs:156:13 [INFO] [stdout] | [INFO] [stdout] 156 | let mut rng = match seed { [INFO] [stdout] | ----^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `rng` [INFO] [stdout] --> simmr/src/error_profiles/custom_short.rs:156:13 [INFO] [stdout] | [INFO] [stdout] 156 | let mut rng = match seed { [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_rng` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> simmr/src/error_profiles/custom_short.rs:329:13 [INFO] [stdout] | [INFO] [stdout] 329 | let mut rng = match seed { [INFO] [stdout] | ----^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `rng` [INFO] [stdout] --> simmr/src/error_profiles/custom_short.rs:329:13 [INFO] [stdout] | [INFO] [stdout] 329 | let mut rng = match seed { [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_rng` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seed` [INFO] [stdout] --> simmr/src/error_profiles/minimal_long.rs:29:31 [INFO] [stdout] | [INFO] [stdout] 29 | fn get_insert_size(&self, seed: Option) -> u16 { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_seed` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seed` [INFO] [stdout] --> simmr/src/error_profiles/minimal_long.rs:33:38 [INFO] [stdout] | [INFO] [stdout] 33 | fn get_random_insert_size(&self, seed: Option) -> u16 { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_seed` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seed` [INFO] [stdout] --> simmr/src/error_profiles/minimal_long.rs:146:48 [INFO] [stdout] | [INFO] [stdout] 146 | fn simulate_errors(&self, sequence: &[u8], seed: Option) -> Vec { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_seed` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `sequence` [INFO] [stdout] --> simmr/src/error_profiles/minimal_short.rs:29:31 [INFO] [stdout] | [INFO] [stdout] 29 | fn simulate_errors(&self, sequence: &[u8], seed: Option) -> Vec { [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_sequence` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seed` [INFO] [stdout] --> simmr/src/error_profiles/minimal_short.rs:29:48 [INFO] [stdout] | [INFO] [stdout] 29 | fn simulate_errors(&self, sequence: &[u8], seed: Option) -> Vec { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_seed` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seed` [INFO] [stdout] --> simmr/src/error_profiles/perfect_long.rs:24:31 [INFO] [stdout] | [INFO] [stdout] 24 | fn get_insert_size(&self, seed: Option) -> u16 { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_seed` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seed` [INFO] [stdout] --> simmr/src/error_profiles/perfect_long.rs:28:38 [INFO] [stdout] | [INFO] [stdout] 28 | fn get_random_insert_size(&self, seed: Option) -> u16 { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_seed` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seed` [INFO] [stdout] --> simmr/src/error_profiles/perfect_long.rs:32:31 [INFO] [stdout] | [INFO] [stdout] 32 | fn get_read_length(&self, seed: Option) -> u16 { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_seed` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seed` [INFO] [stdout] --> simmr/src/error_profiles/perfect_long.rs:125:48 [INFO] [stdout] | [INFO] [stdout] 125 | fn simulate_errors(&self, sequence: &[u8], seed: Option) -> Vec { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_seed` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seed` [INFO] [stdout] --> simmr/src/error_profiles/perfect_short.rs:22:31 [INFO] [stdout] | [INFO] [stdout] 22 | fn get_read_length(&self, seed: Option) -> u16 { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_seed` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seed` [INFO] [stdout] --> simmr/src/error_profiles/perfect_short.rs:26:38 [INFO] [stdout] | [INFO] [stdout] 26 | fn get_random_read_length(&self, seed: Option) -> u16 { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_seed` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seed` [INFO] [stdout] --> simmr/src/error_profiles/perfect_short.rs:30:31 [INFO] [stdout] | [INFO] [stdout] 30 | fn get_insert_size(&self, seed: Option) -> u16 { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_seed` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seed` [INFO] [stdout] --> simmr/src/error_profiles/perfect_short.rs:38:38 [INFO] [stdout] | [INFO] [stdout] 38 | fn get_random_insert_size(&self, seed: Option) -> u16 { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_seed` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> simmr/src/simulate.rs:358:17 [INFO] [stdout] | [INFO] [stdout] 358 | let mut read_length = error_profile.get_random_read_length(seed); [INFO] [stdout] | ----^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `e` [INFO] [stdout] --> simmr/src/simulate.rs:383:25 [INFO] [stdout] | [INFO] [stdout] 383 | Err(e) => continue, [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_e` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `get_random_insert_size` is never used [INFO] [stdout] --> simmr/src/error_profiles/base.rs:14:8 [INFO] [stdout] | [INFO] [stdout] 6 | pub trait ErrorProfile { [INFO] [stdout] | ------------ method in this trait [INFO] [stdout] ... [INFO] [stdout] 14 | fn get_random_insert_size(&self, seed: Option) -> u16; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `CustomLongErrorProfile` is never constructed [INFO] [stdout] --> simmr/src/error_profiles/custom_long.rs:22:12 [INFO] [stdout] | [INFO] [stdout] 22 | pub struct CustomLongErrorProfile { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `gaussian` is never used [INFO] [stdout] --> simmr/src/error_profiles/custom_long.rs:36:4 [INFO] [stdout] | [INFO] [stdout] 36 | fn gaussian(x: f64, xs: &[f64], bandwidth: f64) -> f64 { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `QualityScoreDistribution` is never constructed [INFO] [stdout] --> simmr/src/error_profiles/custom_short.rs:22:12 [INFO] [stdout] | [INFO] [stdout] 22 | pub struct QualityScoreDistribution { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `gaussian` is never used [INFO] [stdout] --> simmr/src/error_profiles/custom_short.rs:60:4 [INFO] [stdout] | [INFO] [stdout] 60 | fn gaussian(x: f64, xs: &[f64], bandwidth: f64) -> f64 { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `read_length` and `read_length_std` are never read [INFO] [stdout] --> simmr/src/error_profiles/minimal_long.rs:19:9 [INFO] [stdout] | [INFO] [stdout] 17 | pub struct MinimalLongErrorProfile { [INFO] [stdout] | ----------------------- fields in this struct [INFO] [stdout] 18 | pub mean_phred_score: u8, [INFO] [stdout] 19 | pub read_length: u16, [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] 20 | pub read_length_std: f64, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `uuid` is never read [INFO] [stdout] --> simmr/src/genome.rs:20:9 [INFO] [stdout] | [INFO] [stdout] 18 | pub struct Seq { [INFO] [stdout] | --- field in this struct [INFO] [stdout] 19 | pub id: Vec, [INFO] [stdout] 20 | pub uuid: u64, [INFO] [stdout] | ^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `Seq` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `contiguous` is never read [INFO] [stdout] --> simmr/src/genome.rs:40:9 [INFO] [stdout] | [INFO] [stdout] 26 | pub struct Genome { [INFO] [stdout] | ------ field in this struct [INFO] [stdout] ... [INFO] [stdout] 40 | pub contiguous: bool, [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `Genome` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `PERead` is never constructed [INFO] [stdout] --> simmr/src/simulate.rs:36:12 [INFO] [stdout] | [INFO] [stdout] 36 | pub struct PERead { [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `LongRead` is never constructed [INFO] [stdout] --> simmr/src/simulate.rs:46:12 [INFO] [stdout] | [INFO] [stdout] 46 | pub struct LongRead { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: linking with `rust-lld` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "rust-lld" "-flavor" "wasm" "--export" "__main_void" "--export" "bz_internal_error" "-z" "stack-size=1048576" "--stack-first" "--no-demangle" "/lib/rustlib/wasm32-wasip1/lib/self-contained/crt1-command.o" "<17 object files omitted>" "/opt/rustwide/target/wasm32-wasip1/debug/deps/{libuuid-8569a997e43615f5,libtracing_subscriber-0e15c8b262dc9251,libsmallvec-b69864b400d6942d,libansi_term-e6505b9a6cac2ba7,libthread_local-caaa10ef4c08c4d3,libsharded_slab-2f8e5150dc92706c,libtracing_log-fa9629a8f3cf09f9,liblog-c14c66ef183ceced,libtracing-76a8daf9254237ad,libpin_project_lite-ed8e8f978657eea7,libtracing_core-084e464c4094f94f,libneedletail-f0f56916c845136c}.rlib" "/lib/rustlib/wasm32-wasip1/lib/libpanic_abort-*.rlib" "/opt/rustwide/target/wasm32-wasip1/debug/deps/{libbytecount-b9610b5746310ae9,libbuf_redux-47dfa0cb683c1e05,libsafemem-dd741780d2fe4638,libxz2-5f1ddd8ecb3f2d6a,liblzma_sys-ec6db1728cb5e6b8,libflate2-d5c1866d81c18c02,libminiz_oxide-af3f6e5664860dec,libadler-5d585fd5ceaaf370,libcrc32fast-f0a61590867b47c0,libbzip2-599336ab2224753a,libbzip2_sys-59cceb3832a25ebe,liblibc-69985efa0b34734f,libcsv-01e35c631ffffdde,libryu-532612ec2f9fcdf5,libitoa-3ac40087b46f8b08,libcsv_core-54157c45b2b93874,libbstr-533c577184ec9e62,liblazy_static-36da267ce9339a94,libregex_automata-92fd52de9e5ea89a,libmemchr-b559ff6c4bd2cfb8,libstats-41dc1fe4735eb028,librand_distr-19924ba3ce91aadd,librand-85b25e52c09b45cc,librand_chacha-a02b129f13fce80a,libppv_lite86-9452d911b167a9de,librand_core-9495539fb9e88f71,libgetrandom-adea802801e7aaab,libwasi-209230712e0af480,libcfg_if-50b02a9e3502ecf2,libshared-2beb86cc851d4d3f,libnum_traits-dbc2d2d0de39f94d,libbincode-64bc4814b68f9bb5,libserde-df5c63fdf190abbf,libclap-a09bdb8882b004eb,libatty-3242e974e54baef7,libstrsim-39ec6cd5a47c2372,libtermcolor-8d7030a2f5e002ea,libtextwrap-bd870ef01292318d,libindexmap-857c86ba96b002d9,libhashbrown-ece374be44553230,libclap_lex-d006d4b3aff0316b,libos_str_bytes-ff3d87539e46df31,libbitflags-15e3d67e03629ffa,libonce_cell-fda9a7a5bf2cc4ba}.rlib" "/lib/rustlib/wasm32-wasip1/lib/{libstd-*,libwasi-*,libcfg_if-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,liblibc-*}.rlib" "-l" "c" "/lib/rustlib/wasm32-wasip1/lib/{librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-L" "/opt/rustwide/target/wasm32-wasip1/debug/build/bzip2-sys-045bcc8050bf41c0/out/lib" "-L" "/opt/rustwide/target/wasm32-wasip1/debug/build/lzma-sys-b7b788080e0241b0/out" "-L" "/lib/rustlib/wasm32-wasip1/lib/self-contained" "-o" "/opt/rustwide/target/wasm32-wasip1/debug/deps/simmr-7f466f36e3aa6ef9.wasm" "--gc-sections" "-O0" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'block_decoder.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'auto_decoder.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'filter_decoder.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'outqueue.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'stream_encoder_mt.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'easy_decoder_memusage.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'hardware_physmem.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'stream_buffer_decoder.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'filter_flags_decoder.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'index_hash.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'stream_encoder.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'alone_decoder.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'stream_buffer_encoder.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'filter_encoder.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'stream_decoder.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'common.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'filter_flags_encoder.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'filter_common.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'easy_encoder.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'block_util.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'block_buffer_encoder.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'vli_size.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'easy_encoder_memusage.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'index.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'block_header_encoder.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'index_decoder.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'block_encoder.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'stream_flags_encoder.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'filter_buffer_decoder.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'block_header_decoder.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'stream_flags_decoder.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'easy_buffer_encoder.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'filter_buffer_encoder.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'hardware_cputhreads.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'index_encoder.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'easy_preset.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'vli_decoder.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'alone_encoder.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'stream_flags_common.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'block_buffer_decoder.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'vli_encoder.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'lzma_encoder.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'lzma2_encoder.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'lzma_encoder_optimum_normal.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'lzma_decoder.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'fastpos_table.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'lzma_encoder_presets.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'lzma_encoder_optimum_fast.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'lzma2_decoder.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'lz_encoder_mf.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'lz_decoder.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'lz_encoder.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'sha256.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'crc32_table.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'check.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'crc64_table.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'crc32_fast.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'crc64_fast.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'delta_encoder.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'delta_common.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'delta_decoder.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'price_table.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'powerpc.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'simple_encoder.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'x86.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'simple_decoder.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'simple_coder.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'ia64.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'sparc.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'arm.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'armthumb.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'tuklib_cpucores.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblzma_sys-ec6db1728cb5e6b8.rlib: archive member 'tuklib_physmem.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/libbzip2_sys-59cceb3832a25ebe.rlib: archive member 'blocksort.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/libbzip2_sys-59cceb3832a25ebe.rlib: archive member 'huffman.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/libbzip2_sys-59cceb3832a25ebe.rlib: archive member 'crctable.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/libbzip2_sys-59cceb3832a25ebe.rlib: archive member 'randtable.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/libbzip2_sys-59cceb3832a25ebe.rlib: archive member 'compress.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/libbzip2_sys-59cceb3832a25ebe.rlib: archive member 'decompress.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/libbzip2_sys-59cceb3832a25ebe.rlib: archive member 'bzlib.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: error: /opt/rustwide/target/wasm32-wasip1/debug/deps/libxz2-5f1ddd8ecb3f2d6a.rlib(xz2-5f1ddd8ecb3f2d6a.xz2.d149fc647914081e-cgu.0.rcgu.o): undefined symbol: lzma_end [INFO] [stdout] rust-lld: error: /opt/rustwide/target/wasm32-wasip1/debug/deps/libxz2-5f1ddd8ecb3f2d6a.rlib(xz2-5f1ddd8ecb3f2d6a.xz2.d149fc647914081e-cgu.0.rcgu.o): undefined symbol: lzma_code [INFO] [stdout] rust-lld: error: /opt/rustwide/target/wasm32-wasip1/debug/deps/libxz2-5f1ddd8ecb3f2d6a.rlib(xz2-5f1ddd8ecb3f2d6a.xz2.d149fc647914081e-cgu.0.rcgu.o): undefined symbol: lzma_stream_decoder [INFO] [stdout] rust-lld: error: /opt/rustwide/target/wasm32-wasip1/debug/deps/libbzip2-599336ab2224753a.rlib(bzip2-599336ab2224753a.bzip2.d6b324924712b2c5-cgu.0.rcgu.o): undefined symbol: BZ2_bzDecompress [INFO] [stdout] rust-lld: error: /opt/rustwide/target/wasm32-wasip1/debug/deps/libbzip2-599336ab2224753a.rlib(bzip2-599336ab2224753a.bzip2.d6b324924712b2c5-cgu.0.rcgu.o): undefined symbol: BZ2_bzDecompressInit [INFO] [stdout] rust-lld: error: /opt/rustwide/target/wasm32-wasip1/debug/deps/libbzip2-599336ab2224753a.rlib(bzip2-599336ab2224753a.bzip2.d6b324924712b2c5-cgu.0.rcgu.o): undefined symbol: BZ2_bzDecompressEnd [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `simmr` (bin "simmr") due to 1 previous error; 51 warnings emitted [INFO] running `Command { std: "docker" "inspect" "5870ec2780637a66b214446bfe025970eeae4179aada0d25c62f7eb2e117c66a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5870ec2780637a66b214446bfe025970eeae4179aada0d25c62f7eb2e117c66a", kill_on_drop: false }` [INFO] [stdout] 5870ec2780637a66b214446bfe025970eeae4179aada0d25c62f7eb2e117c66a