[INFO] cloning repository https://github.com/SemSSK/StochasticSimulator [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/SemSSK/StochasticSimulator" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FSemSSK%2FStochasticSimulator", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FSemSSK%2FStochasticSimulator'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] dd39cb3b8639678aaaa0b1169dc609211b9aca32 [INFO] building SemSSK/StochasticSimulator against try#23647e694de8d0904848ad068b2e0ec2dd098c37+target=wasm32-wasip1 for pr-149868 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FSemSSK%2FStochasticSimulator" "/workspace/builds/worker-3-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-3-tc2/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/SemSSK/StochasticSimulator [INFO] finished tweaking git repo https://github.com/SemSSK/StochasticSimulator [INFO] tweaked toml for git repo https://github.com/SemSSK/StochasticSimulator written to /workspace/builds/worker-3-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/SemSSK/StochasticSimulator on toolchain 23647e694de8d0904848ad068b2e0ec2dd098c37 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+23647e694de8d0904848ad068b2e0ec2dd098c37" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/SemSSK/StochasticSimulator already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+23647e694de8d0904848ad068b2e0ec2dd098c37" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:845e597a41426bbf2703be69acdb67d10b6de511142d05cba7bbe119c898b2c7" "/opt/rustwide/cargo-home/bin/cargo" "+23647e694de8d0904848ad068b2e0ec2dd098c37" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] a4e7b5d43150678c5e6c83fdaef53dbafba8d07805fe8dd0bb35711ca4675e51 [INFO] running `Command { std: "docker" "start" "-a" "a4e7b5d43150678c5e6c83fdaef53dbafba8d07805fe8dd0bb35711ca4675e51", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "a4e7b5d43150678c5e6c83fdaef53dbafba8d07805fe8dd0bb35711ca4675e51", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a4e7b5d43150678c5e6c83fdaef53dbafba8d07805fe8dd0bb35711ca4675e51", kill_on_drop: false }` [INFO] [stdout] a4e7b5d43150678c5e6c83fdaef53dbafba8d07805fe8dd0bb35711ca4675e51 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:845e597a41426bbf2703be69acdb67d10b6de511142d05cba7bbe119c898b2c7" "/opt/rustwide/cargo-home/bin/cargo" "+23647e694de8d0904848ad068b2e0ec2dd098c37" "build" "--frozen" "--message-format=json" "--target" "wasm32-wasip1", kill_on_drop: false }` [INFO] [stdout] 88dae5996dde684ab537fab9053607d00597f77442a9029a0f6e34ed410ffc1a [INFO] running `Command { std: "docker" "start" "-a" "88dae5996dde684ab537fab9053607d00597f77442a9029a0f6e34ed410ffc1a", kill_on_drop: false }` [INFO] [stderr] Compiling anstyle v1.0.6 [INFO] [stderr] Compiling either v1.10.0 [INFO] [stderr] Compiling anstyle-query v1.0.2 [INFO] [stderr] Compiling libc v0.2.153 [INFO] [stderr] Compiling getrandom v0.2.14 [INFO] [stderr] Compiling anstyle-parse v0.2.3 [INFO] [stderr] Compiling libmimalloc-sys v0.1.35 [INFO] [stderr] Compiling ahash v0.8.11 [INFO] [stderr] Compiling num-traits v0.2.18 [INFO] [stderr] Compiling portable-atomic v1.6.0 [INFO] [stderr] Compiling heapless v0.8.0 [INFO] [stderr] Compiling anyhow v1.0.80 [INFO] [stderr] Compiling clap_lex v0.7.0 [INFO] [stderr] Compiling syn v2.0.58 [INFO] [stderr] Compiling hash32 v0.3.1 [INFO] [stderr] Compiling once_cell v1.19.0 [INFO] [stderr] Compiling instant v0.1.12 [INFO] [stderr] Compiling number_prefix v0.4.0 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling console v0.15.8 [INFO] [stderr] Compiling simulation_parser v0.1.0 (/opt/rustwide/workdir/simulation_parser) [INFO] [stderr] Compiling fastrand v2.0.2 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling allocator-api2 v0.2.18 [INFO] [stderr] Compiling anstream v0.6.13 [INFO] [stderr] Compiling rayon v1.10.0 [INFO] [stderr] Compiling itertools v0.12.1 [INFO] [stdout] warning: function `parse_plus` is never used [INFO] [stdout] --> simulation_parser/src/brenda_parser_helpers.rs:49:8 [INFO] [stdout] | [INFO] [stdout] 49 | pub fn parse_plus<'a>() -> impl Parser<'a, &'static str> { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `parse_solubes_and_results` is never used [INFO] [stdout] --> simulation_parser/src/brenda_parser_helpers.rs:59:8 [INFO] [stdout] | [INFO] [stdout] 59 | pub fn parse_solubes_and_results<'a>() -> impl Parser<'a, Vec> { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `parse_uN` should have a snake case name [INFO] [stdout] --> simulation_parser/src/brenda_parser_helpers.rs:14:8 [INFO] [stdout] | [INFO] [stdout] 14 | pub fn parse_uN<'a>() -> impl Parser<'a, &'static str> { [INFO] [stdout] | ^^^^^^^^ help: convert the identifier to snake case: `parse_u_n` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling clap_builder v4.5.2 [INFO] [stderr] Compiling indicatif v0.17.8 [INFO] [stderr] Compiling glam v0.27.0 [INFO] [stderr] Compiling mimalloc v0.1.39 [INFO] [stderr] Compiling rstar v0.12.0 [INFO] [stderr] Compiling hashbrown v0.14.3 [INFO] [stderr] Compiling clap_derive v4.5.4 [INFO] [stderr] Compiling clap v4.5.4 [INFO] [stderr] Compiling entity_centered v0.1.0 (/opt/rustwide/workdir/entity_centered) [INFO] [stderr] Compiling gillespie v0.1.0 (/opt/rustwide/workdir/gillespie) [INFO] [stdout] warning: unused imports: `Duration` and `Instant` [INFO] [stdout] --> entity_centered/src/simulation.rs:1:17 [INFO] [stdout] | [INFO] [stdout] 1 | use std::time::{Duration, Instant}; [INFO] [stdout] | ^^^^^^^^ ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `arg` [INFO] [stdout] --> gillespie/src/main.rs:3:12 [INFO] [stdout] | [INFO] [stdout] 3 | use clap::{arg, Parser}; [INFO] [stdout] | ^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rayon::prelude` [INFO] [stdout] --> entity_centered/src/simulation.rs:11:5 [INFO] [stdout] | [INFO] [stdout] 11 | use rayon::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `p1` [INFO] [stdout] --> entity_centered/src/probability.rs:17:13 [INFO] [stdout] | [INFO] [stdout] 17 | let p1 = if kcat >= 300. && km <= 80. { [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_p1` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: linking with `rust-lld` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "rust-lld" "-flavor" "wasm" "--export" "__main_void" "-z" "stack-size=1048576" "--stack-first" "--no-demangle" "/lib/rustlib/wasm32-wasip1/lib/self-contained/crt1-command.o" "<10 object files omitted>" "/lib/rustlib/wasm32-wasip1/lib/libpanic_abort-*.rlib" "/opt/rustwide/target/wasm32-wasip1/debug/deps/{libanyhow-515d38a10fd88112,libfastrand-dc71847a74edd88a,libmimalloc-790794b05fd81aba,liblibmimalloc_sys-d38cc61c998bf9a0,liblibc-5abfd0da628c8e2f,libsimulation_parser-1101e8e76b150503,librustc_hash-a5d506436d1d3d05,libclap-75249541b2698be8,libclap_builder-390c712f37ff196d,libstrsim-e512297c5f919e18,libanstream-77f9e3f9ccfb9eda,libanstyle_query-762ab2e6ee56ccd9,libcolorchoice-f843408b53bb43d3,libanstyle_parse-43b39865f2d18548,libutf8parse-c7a8e2c1750ad77c,libclap_lex-2df4257bb6863119,libanstyle-2a113e70dd25572f,libglam-fdaacc5cbc0b4608,librand-9a29e6ad660f628c,librand_chacha-d994e9fb25f43494,libppv_lite86-486e4425e6fd09e6,librand_core-dc7619a84b8563c1,libgetrandom-884f0132cdcec0c8,libwasi-b9c6bfbff0bef49f,libitertools-8fec089b6319076f,libindicatif-cf31c9aab11bdf92,libportable_atomic-c2bf1980ff8a3ebf,libnumber_prefix-98504c5031490c82,libinstant-4ee7e638d10598a5,libconsole-25b9cf50ba7a7d2f,libunicode_width-9718a35a1702a5af,liblazy_static-36da267ce9339a94,libhashbrown-58b00460b0ab8df9,libahash-7c9a4fef98a11005,libonce_cell-847ca6422e74ab52,libcfg_if-50b02a9e3502ecf2,libzerocopy-8ac84286dd5aeee5,librayon-3e15cbd50746a9f4,librayon_core-596b789b3248fe04,libcrossbeam_deque-edfc9ac1b274ec38,libcrossbeam_epoch-8b329c916e80e0f6,libcrossbeam_utils-8a6fb6f51532af4f,libeither-b6223a2c93d4ea08,liballocator_api2-75453bb91fa4a6dc}.rlib" "/lib/rustlib/wasm32-wasip1/lib/{libstd-*,libwasi-*,libcfg_if-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,liblibc-*}.rlib" "-l" "c" "/lib/rustlib/wasm32-wasip1/lib/{librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-L" "/opt/rustwide/target/wasm32-wasip1/debug/build/libmimalloc-sys-75131344c04c9217/out" "-L" "/lib/rustlib/wasm32-wasip1/lib/self-contained" "-o" "/opt/rustwide/target/wasm32-wasip1/debug/deps/entity_centered-6ddc5b7fcaa2e865.wasm" "--gc-sections" "-O0" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: rust-lld: warning: /opt/rustwide/target/wasm32-wasip1/debug/deps/liblibmimalloc_sys-d38cc61c998bf9a0.rlib: archive member '98cfcaec7182b1d8-static.o' is neither Wasm object file nor LLVM bitcode [INFO] [stdout] rust-lld: error: /opt/rustwide/target/wasm32-wasip1/debug/deps/entity_centered-6ddc5b7fcaa2e865.entity_centered.bf81b58ca9bf0415-cgu.3.rcgu.o: undefined symbol: mi_zalloc_aligned [INFO] [stdout] rust-lld: error: /opt/rustwide/target/wasm32-wasip1/debug/deps/entity_centered-6ddc5b7fcaa2e865.entity_centered.bf81b58ca9bf0415-cgu.3.rcgu.o: undefined symbol: mi_malloc_aligned [INFO] [stdout] rust-lld: error: /opt/rustwide/target/wasm32-wasip1/debug/deps/entity_centered-6ddc5b7fcaa2e865.entity_centered.bf81b58ca9bf0415-cgu.3.rcgu.o: undefined symbol: mi_free [INFO] [stdout] rust-lld: error: /opt/rustwide/target/wasm32-wasip1/debug/deps/entity_centered-6ddc5b7fcaa2e865.entity_centered.bf81b58ca9bf0415-cgu.3.rcgu.o: undefined symbol: mi_realloc_aligned [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `entity_centered` (bin "entity_centered") due to 1 previous error; 3 warnings emitted [INFO] running `Command { std: "docker" "inspect" "88dae5996dde684ab537fab9053607d00597f77442a9029a0f6e34ed410ffc1a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "88dae5996dde684ab537fab9053607d00597f77442a9029a0f6e34ed410ffc1a", kill_on_drop: false }` [INFO] [stdout] 88dae5996dde684ab537fab9053607d00597f77442a9029a0f6e34ed410ffc1a