[INFO] cloning repository https://github.com/CLIMB-COVID/maptide
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/CLIMB-COVID/maptide" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FCLIMB-COVID%2Fmaptide", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FCLIMB-COVID%2Fmaptide'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] b8ec5c7c1dfd34fd289e458d6a3f87bb4eeb7354
[INFO] building CLIMB-COVID/maptide against try#23647e694de8d0904848ad068b2e0ec2dd098c37+target=wasm32-wasip1 for pr-149868
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FCLIMB-COVID%2Fmaptide" "/workspace/builds/worker-0-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/CLIMB-COVID/maptide
[INFO] finished tweaking git repo https://github.com/CLIMB-COVID/maptide
[INFO] tweaked toml for git repo https://github.com/CLIMB-COVID/maptide written to /workspace/builds/worker-0-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/CLIMB-COVID/maptide on toolchain 23647e694de8d0904848ad068b2e0ec2dd098c37
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+23647e694de8d0904848ad068b2e0ec2dd098c37" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/CLIMB-COVID/maptide already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+23647e694de8d0904848ad068b2e0ec2dd098c37" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:845e597a41426bbf2703be69acdb67d10b6de511142d05cba7bbe119c898b2c7" "/opt/rustwide/cargo-home/bin/cargo" "+23647e694de8d0904848ad068b2e0ec2dd098c37" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 2415514789d22af9e788646325d89cd9357c213e21d95bfe0755288d3072aff3
[INFO] running `Command { std: "docker" "start" "-a" "2415514789d22af9e788646325d89cd9357c213e21d95bfe0755288d3072aff3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "2415514789d22af9e788646325d89cd9357c213e21d95bfe0755288d3072aff3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2415514789d22af9e788646325d89cd9357c213e21d95bfe0755288d3072aff3", kill_on_drop: false }`
[INFO] [stdout] 2415514789d22af9e788646325d89cd9357c213e21d95bfe0755288d3072aff3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:845e597a41426bbf2703be69acdb67d10b6de511142d05cba7bbe119c898b2c7" "/opt/rustwide/cargo-home/bin/cargo" "+23647e694de8d0904848ad068b2e0ec2dd098c37" "build" "--frozen" "--message-format=json" "--target" "wasm32-wasip1", kill_on_drop: false }`
[INFO] [stdout] 67df3463cca276d85842f611a91d608759c3ecdb979b3c2866520da21fa00b88
[INFO] running `Command { std: "docker" "start" "-a" "67df3463cca276d85842f611a91d608759c3ecdb979b3c2866520da21fa00b88", kill_on_drop: false }`
[INFO] [stderr]    Compiling target-lexicon v0.13.2
[INFO] [stderr]    Compiling once_cell v1.17.0
[INFO] [stderr]    Compiling crossbeam-utils v0.8.14
[INFO] [stderr]    Compiling proc-macro2 v1.0.95
[INFO] [stderr]    Compiling unicode-ident v1.0.6
[INFO] [stderr]    Compiling bytes v1.3.0
[INFO] [stderr]    Compiling noodles-core v0.9.0
[INFO] [stderr]    Compiling bit-vec v0.6.3
[INFO] [stderr]    Compiling lexical-util v0.8.5
[INFO] [stderr]    Compiling crc32fast v1.3.2
[INFO] [stderr]    Compiling miniz_oxide v0.6.2
[INFO] [stderr]    Compiling indexmap v1.9.2
[INFO] [stderr]    Compiling libc v0.2.139
[INFO] [stderr]    Compiling memoffset v0.9.1
[INFO] [stderr]    Compiling unindent v0.2.4
[INFO] [stderr]    Compiling indoc v2.0.6
[INFO] [stderr]    Compiling crossbeam-channel v0.5.6
[INFO] [stderr]    Compiling lexical-write-integer v0.8.5
[INFO] [stderr]    Compiling lexical-parse-integer v0.8.6
[INFO] [stderr]    Compiling pyo3-build-config v0.24.2
[INFO] [stderr]    Compiling flate2 v1.0.25
[INFO] [stderr]    Compiling lexical-parse-float v0.8.5
[INFO] [stderr]    Compiling quote v1.0.40
[INFO] [stderr]    Compiling lexical-write-float v0.8.5
[INFO] [stderr]    Compiling syn v2.0.101
[INFO] [stderr]    Compiling noodles-bgzf v0.18.0
[INFO] [stderr]    Compiling noodles-csi v0.12.0
[INFO] [stderr]    Compiling noodles-fasta v0.17.0
[INFO] [stderr]    Compiling pyo3-ffi v0.24.2
[INFO] [stderr]    Compiling pyo3-macros-backend v0.24.2
[INFO] [stderr]    Compiling pyo3 v0.24.2
[INFO] [stderr]    Compiling lexical-core v0.8.5
[INFO] [stderr]    Compiling noodles-sam v0.22.1
[INFO] [stderr]    Compiling noodles-bam v0.25.1
[INFO] [stderr]    Compiling noodles v0.31.1
[INFO] [stderr]    Compiling pyo3-macros v0.24.2
[INFO] [stderr]    Compiling maptide v0.4.0 (/opt/rustwide/workdir)
[INFO] [stdout] error: linking with `rust-lld` failed: exit status: 1
[INFO] [stdout]   |
[INFO] [stdout]   = note:  "rust-lld" "-flavor" "wasm" "--export" "PyInit_maptide" "-z" "stack-size=1048576" "--stack-first" "--no-demangle" "<10 object files omitted>" "<sysroot>/lib/rustlib/wasm32-wasip1/lib/libpanic_abort-*.rlib" "/opt/rustwide/target/wasm32-wasip1/debug/deps/{libpyo3-fbe8ab127ba59ad8,libmemoffset-1b64bd0b3f90d7de,libonce_cell-6ba95b268f002910,libpyo3_ffi-aae5cdc1f7d77c20,liblibc-1dd74f312c75ee64,libunindent-f3ba1184db1bfb23,libnoodles-fb985b63a515f934,libnoodles_bam-f91896c94c1c57d1,libnoodles_sam-e4a6a650610ff403,libbitflags-15e3d67e03629ffa,liblexical_core-8242ee14d7e78d56,liblexical_write_float-498af52863fb0b6c,liblexical_write_integer-845c20061e68cc97,liblexical_parse_float-8f23c4f08641a42b,liblexical_parse_integer-90c90ae0abf4a6f2,liblexical_util-9fc89924a4f9ee2a,libstatic_assertions-5a320074c6765347,librustc_hash-a5d506436d1d3d05,libindexmap-ecf3af2a9d579972,libhashbrown-dbca590948f64ea3,libnoodles_fasta-2e3d8c1cde00710b,libmemchr-b559ff6c4bd2cfb8,libnoodles_csi-589a5d58624f79f2,libbit_vec-7497c98401bbb85c,libnoodles_core-dad0cc8c75e93c07,libnoodles_bgzf-5078ae35d8c6cb40,libflate2-69a0be8e15646baa,libminiz_oxide-edef52b9eefd4328,libadler-5d585fd5ceaaf370,libcrc32fast-f0a61590867b47c0,libcrossbeam_channel-cca2ab1bd0af617a,libcrossbeam_utils-eb798ebaf04cc33d,libcfg_if-50b02a9e3502ecf2,libbytes-50685fa1217acad8,libbyteorder-f00db367bf6f80f8}.rlib" "<sysroot>/lib/rustlib/wasm32-wasip1/lib/{libstd-*,libwasi-*,libcfg_if-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,liblibc-*}.rlib" "-l" "c" "<sysroot>/lib/rustlib/wasm32-wasip1/lib/{librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-L" "<sysroot>/lib/rustlib/wasm32-wasip1/lib/self-contained" "-o" "/opt/rustwide/target/wasm32-wasip1/debug/deps/maptide.wasm" "--gc-sections" "--no-entry" "-O0"
[INFO] [stdout]   = note: some arguments are omitted. use `--verbose` to show all linker arguments
[INFO] [stdout]   = note: rust-lld: error: /opt/rustwide/target/wasm32-wasip1/debug/deps/maptide.maptide.287add93bf6c2cff-cgu.2.rcgu.o: undefined symbol: PyTuple_New
[INFO] [stdout]           rust-lld: error: /opt/rustwide/target/wasm32-wasip1/debug/deps/maptide.maptide.287add93bf6c2cff-cgu.2.rcgu.o: undefined symbol: PyTuple_SetItem
[INFO] [stdout]           rust-lld: error: /opt/rustwide/target/wasm32-wasip1/debug/deps/maptide.maptide.287add93bf6c2cff-cgu.2.rcgu.o: undefined symbol: _Py_NoneStruct
[INFO] [stdout]           rust-lld: error: /opt/rustwide/target/wasm32-wasip1/debug/deps/maptide.maptide.287add93bf6c2cff-cgu.2.rcgu.o: undefined symbol: PyDict_Next
[INFO] [stdout]           rust-lld: error: /opt/rustwide/target/wasm32-wasip1/debug/deps/maptide.maptide.287add93bf6c2cff-cgu.6.rcgu.o: undefined symbol: PyList_New
[INFO] [stdout]           rust-lld: error: /opt/rustwide/target/wasm32-wasip1/debug/deps/maptide.maptide.287add93bf6c2cff-cgu.6.rcgu.o: undefined symbol: PyList_SetItem
[INFO] [stdout]           rust-lld: error: /opt/rustwide/target/wasm32-wasip1/debug/deps/maptide.maptide.287add93bf6c2cff-cgu.7.rcgu.o: undefined symbol: PyExc_IndexError
[INFO] [stdout]           rust-lld: error: /opt/rustwide/target/wasm32-wasip1/debug/deps/maptide.maptide.287add93bf6c2cff-cgu.7.rcgu.o: undefined symbol: PyExc_IndexError
[INFO] [stdout]           rust-lld: error: /opt/rustwide/target/wasm32-wasip1/debug/deps/maptide.maptide.287add93bf6c2cff-cgu.7.rcgu.o: undefined symbol: PyExc_KeyError
[INFO] [stdout]           rust-lld: error: /opt/rustwide/target/wasm32-wasip1/debug/deps/maptide.maptide.287add93bf6c2cff-cgu.7.rcgu.o: undefined symbol: PyExc_KeyError
[INFO] [stdout]           rust-lld: error: /opt/rustwide/target/wasm32-wasip1/debug/deps/maptide.maptide.287add93bf6c2cff-cgu.7.rcgu.o: undefined symbol: PyExc_IOError
[INFO] [stdout]           rust-lld: error: /opt/rustwide/target/wasm32-wasip1/debug/deps/maptide.maptide.287add93bf6c2cff-cgu.7.rcgu.o: undefined symbol: PyExc_IOError
[INFO] [stdout]           rust-lld: error: /opt/rustwide/target/wasm32-wasip1/debug/deps/maptide.maptide.287add93bf6c2cff-cgu.7.rcgu.o: undefined symbol: PyExc_Exception
[INFO] [stdout]           rust-lld: error: /opt/rustwide/target/wasm32-wasip1/debug/deps/maptide.maptide.287add93bf6c2cff-cgu.7.rcgu.o: undefined symbol: PyExc_Exception
[INFO] [stdout]           rust-lld: error: /opt/rustwide/target/wasm32-wasip1/debug/deps/libpyo3-fbe8ab127ba59ad8.rlib(pyo3-fbe8ab127ba59ad8.pyo3.65ec52296090d32d-cgu.00.rcgu.o): undefined symbol: PyBytes_AsString
[INFO] [stdout]           rust-lld: error: /opt/rustwide/target/wasm32-wasip1/debug/deps/libpyo3-fbe8ab127ba59ad8.rlib(pyo3-fbe8ab127ba59ad8.pyo3.65ec52296090d32d-cgu.00.rcgu.o): undefined symbol: PyBytes_Size
[INFO] [stdout]           rust-lld: error: /opt/rustwide/target/wasm32-wasip1/debug/deps/libpyo3-fbe8ab127ba59ad8.rlib(pyo3-fbe8ab127ba59ad8.pyo3.65ec52296090d32d-cgu.00.rcgu.o): undefined symbol: PyTuple_GetItem
[INFO] [stdout]           rust-lld: error: /opt/rustwide/target/wasm32-wasip1/debug/deps/libpyo3-fbe8ab127ba59ad8.rlib(pyo3-fbe8ab127ba59ad8.pyo3.65ec52296090d32d-cgu.00.rcgu.o): undefined symbol: PyUnicode_AsEncodedString
[INFO] [stdout]           rust-lld: error: /opt/rustwide/target/wasm32-wasip1/debug/deps/libpyo3-fbe8ab127ba59ad8.rlib(pyo3-fbe8ab127ba59ad8.pyo3.65ec52296090d32d-cgu.00.rcgu.o): undefined symbol: PyUnicode_AsUTF8String
[INFO] [stdout]           rust-lld: error: /opt/rustwide/target/wasm32-wasip1/debug/deps/libpyo3-fbe8ab127ba59ad8.rlib(pyo3-fbe8ab127ba59ad8.pyo3.65ec52296090d32d-cgu.00.rcgu.o): undefined symbol: Py_IncRef
[INFO] [stdout]           rust-lld: error: too many errors emitted, stopping now (use -error-limit=0 to see all errors)
[INFO] [stdout]           
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `maptide` (lib) due to 1 previous error
[INFO] running `Command { std: "docker" "inspect" "67df3463cca276d85842f611a91d608759c3ecdb979b3c2866520da21fa00b88", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "67df3463cca276d85842f611a91d608759c3ecdb979b3c2866520da21fa00b88", kill_on_drop: false }`
[INFO] [stdout] 67df3463cca276d85842f611a91d608759c3ecdb979b3c2866520da21fa00b88