[INFO] fetching crate nucleaze 1.4.0...
[INFO] testing nucleaze-1.4.0 against master#2fd6efc32704647e64d3d646d21c4c68eae100e4 for pr-149852-1
[INFO] extracting crate nucleaze 1.4.0 into /workspace/builds/worker-0-tc1/source
[INFO] started tweaking crates.io crate nucleaze 1.4.0
[INFO] removed 0 missing tests
[INFO] finished tweaking crates.io crate nucleaze 1.4.0
[INFO] tweaked toml for crates.io crate nucleaze 1.4.0 written to /workspace/builds/worker-0-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate nucleaze 1.4.0 on toolchain 2fd6efc32704647e64d3d646d21c4c68eae100e4
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+2fd6efc32704647e64d3d646d21c4c68eae100e4" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate nucleaze 1.4.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+2fd6efc32704647e64d3d646d21c4c68eae100e4" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded rlimit v0.10.2
[INFO] [stderr]   Downloaded liblzma v0.3.6
[INFO] [stderr]   Downloaded buffer-redux v1.0.2
[INFO] [stderr]   Downloaded needletail v0.6.3
[INFO] [stderr]   Downloaded liblzma-sys v0.3.13
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:98afbf2d16093dec2546ff8915fddc74e65664aa03fc460b3712b1c2c54a33e4" "/opt/rustwide/cargo-home/bin/cargo" "+2fd6efc32704647e64d3d646d21c4c68eae100e4" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 024176f62fd59eb782478987502b7c390fbefa81eba97408494329bd545cae12
[INFO] running `Command { std: "docker" "start" "-a" "024176f62fd59eb782478987502b7c390fbefa81eba97408494329bd545cae12", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "024176f62fd59eb782478987502b7c390fbefa81eba97408494329bd545cae12", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "024176f62fd59eb782478987502b7c390fbefa81eba97408494329bd545cae12", kill_on_drop: false }`
[INFO] [stdout] 024176f62fd59eb782478987502b7c390fbefa81eba97408494329bd545cae12
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:98afbf2d16093dec2546ff8915fddc74e65664aa03fc460b3712b1c2c54a33e4" "/opt/rustwide/cargo-home/bin/cargo" "+2fd6efc32704647e64d3d646d21c4c68eae100e4" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] abc8e23bde2ec0a72bbbc4534e87fdaf68dc9483a5ea61cdcd4d4e68bfb839ea
[INFO] running `Command { std: "docker" "start" "-a" "abc8e23bde2ec0a72bbbc4534e87fdaf68dc9483a5ea61cdcd4d4e68bfb839ea", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.179
[INFO] [stderr]    Compiling zstd-safe v7.2.4
[INFO] [stderr]    Compiling regex-automata v0.4.11
[INFO] [stderr]    Compiling predicates-core v1.0.9
[INFO] [stderr]    Compiling rlimit v0.10.2
[INFO] [stderr]    Compiling anstream v0.6.21
[INFO] [stderr]    Compiling difflib v0.4.0
[INFO] [stderr]    Compiling assert_cmd v2.1.1
[INFO] [stderr]    Compiling normalize-line-endings v0.3.0
[INFO] [stderr]    Compiling float-cmp v0.10.0
[INFO] [stderr]    Compiling syn v2.0.106
[INFO] [stderr]    Compiling termtree v0.5.1
[INFO] [stderr]    Compiling rustix v1.1.3
[INFO] [stderr]    Compiling flate2 v1.1.2
[INFO] [stderr]    Compiling crossbeam-channel v0.5.15
[INFO] [stderr]    Compiling crossbeam-queue v0.3.12
[INFO] [stderr]    Compiling buffer-redux v1.0.2
[INFO] [stderr]    Compiling unty v0.0.4
[INFO] [stderr]    Compiling predicates-tree v1.0.12
[INFO] [stderr]    Compiling bytecount v0.6.9
[INFO] [stderr]    Compiling bincode v2.0.1
[INFO] [stderr]    Compiling clap_builder v4.5.54
[INFO] [stderr]    Compiling crossbeam v0.8.4
[INFO] [stderr]    Compiling jobserver v0.1.34
[INFO] [stderr]    Compiling getrandom v0.3.3
[INFO] [stderr]    Compiling wait-timeout v0.2.1
[INFO] [stderr]    Compiling num_cpus v1.17.0
[INFO] [stderr]    Compiling sysinfo v0.37.2
[INFO] [stderr]    Compiling cc v1.2.40
[INFO] [stderr]    Compiling rand_core v0.9.3
[INFO] [stderr]    Compiling rand_chacha v0.9.0
[INFO] [stderr]    Compiling rand v0.9.2
[INFO] [stderr]    Compiling tempfile v3.24.0
[INFO] [stderr]    Compiling zstd-sys v2.0.16+zstd.1.5.7
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling liblzma-sys v0.3.13
[INFO] [stderr]    Compiling bzip2 v0.4.4
[INFO] [stderr]    Compiling clap_derive v4.5.49
[INFO] [stderr]    Compiling regex v1.11.3
[INFO] [stderr]    Compiling bstr v1.12.1
[INFO] [stderr]    Compiling predicates v3.1.3
[INFO] [stderr]    Compiling liblzma v0.3.6
[INFO] [stderr]    Compiling clap v4.5.54
[INFO] [stderr]    Compiling zstd v0.13.3
[INFO] [stderr]    Compiling needletail v0.6.3
[INFO] [stderr]    Compiling nucleaze v1.4.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 25.98s
[INFO] running `Command { std: "docker" "inspect" "abc8e23bde2ec0a72bbbc4534e87fdaf68dc9483a5ea61cdcd4d4e68bfb839ea", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "abc8e23bde2ec0a72bbbc4534e87fdaf68dc9483a5ea61cdcd4d4e68bfb839ea", kill_on_drop: false }`
[INFO] [stdout] abc8e23bde2ec0a72bbbc4534e87fdaf68dc9483a5ea61cdcd4d4e68bfb839ea
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:98afbf2d16093dec2546ff8915fddc74e65664aa03fc460b3712b1c2c54a33e4" "/opt/rustwide/cargo-home/bin/cargo" "+2fd6efc32704647e64d3d646d21c4c68eae100e4" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 3bb102dcc446016ae0a46e52e9f441cf28b2814a8909e3d6f9a5132fab9dc767
[INFO] running `Command { std: "docker" "start" "-a" "3bb102dcc446016ae0a46e52e9f441cf28b2814a8909e3d6f9a5132fab9dc767", kill_on_drop: false }`
[INFO] [stderr]    Compiling nucleaze v1.4.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 1.64s
[INFO] running `Command { std: "docker" "inspect" "3bb102dcc446016ae0a46e52e9f441cf28b2814a8909e3d6f9a5132fab9dc767", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3bb102dcc446016ae0a46e52e9f441cf28b2814a8909e3d6f9a5132fab9dc767", kill_on_drop: false }`
[INFO] [stdout] 3bb102dcc446016ae0a46e52e9f441cf28b2814a8909e3d6f9a5132fab9dc767
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:98afbf2d16093dec2546ff8915fddc74e65664aa03fc460b3712b1c2c54a33e4" "/opt/rustwide/cargo-home/bin/cargo" "+2fd6efc32704647e64d3d646d21c4c68eae100e4" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 44228ab5411342f405fc2934c75fc7cd4c414aebcb71876109685f0d590496c8
[INFO] running `Command { std: "docker" "start" "-a" "44228ab5411342f405fc2934c75fc7cd4c414aebcb71876109685f0d590496c8", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.17s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/nucleaze-7ba38f85758ef123)
[INFO] [stdout] running 33 tests
[INFO] [stdout] test kmer_ops::tests::test_bit_cap_calculation ... ok
[INFO] [stdout] test kmer_ops::tests::test_canonical_encoding_behavior ... ok
[INFO] [stdout] test kmer_ops::tests::test_empty_reference_set ... ok
[INFO] [stdout] test kmer_ops::tests::test_encoding_bit_length ... ok
[INFO] [stdout] test kmer_ops::tests::test_encode_multiple_bases ... ok
[INFO] [stdout] test kmer_ops::tests::test_encoding_consistency ... ok
[INFO] [stdout] test kmer_ops::tests::test_kmer_processor_diff_vars ... ok
[INFO] [stdout] test kmer_ops::tests::test_palindromic_sequences ... ok
[INFO] [stdout] test kmer_ops::tests::test_encode_longer_sequence ... ok
[INFO] [stdout] test kmer_ops::tests::test_minimum_k_value ... ok
[INFO] [stdout] test kmer_ops::tests::test_repeated_bases ... ok
[INFO] [stdout] test kmer_ops::tests::test_process_read_too_short ... ok
[INFO] [stdout] test kmer_ops::tests::test_duplicate_kmers ... ok
[INFO] [stdout] test kmer_ops::tests::test_encode_single_base ... ok
[INFO] [stdout] test kmer_ops::tests::test_single_sequence ... ok
[INFO] [stdout] test kmer_ops::tests::test_sequence_length_k_plus_one ... ok
[INFO] [stdout] test kmer_ops::tests::test_threshold_higher ... ok
[INFO] [stdout] test kmer_ops::tests::test_threshold_one ... ok
[INFO] [stdout] test kmer_ops::tests::test_kmer_processor_normal_vars ... ok
[INFO] [stdout] test kmer_ops::tests::test_sequence_length_k ... ok
[INFO] [stdout] test kmer_ops::tests::test_process_read_exact_match ... ok
[INFO] [stdout] test kmer_ops::tests::test_sequence_exactly_k_length ... ok
[INFO] [stdout] test kmer_ops::tests::test_rc_refs ... ok
[INFO] [stdout] test kmer_ops::tests::test_process_read_meets_threshold ... ok
[INFO] [stdout] test kmer_ops::tests::test_process_read_no_match ... ok
[INFO] [stdout] test kmer_ops::tests::test_large_reference_set ... ok
[INFO] [stdout] test kmer_ops::tests::test_long_sequence_processing ... ok
[INFO] [stdout] test kmer_ops::tests::test_process_read_partial_match_below_threshold ... ok
[INFO] [stdout] test kmer_ops::tests::test_canonical ... ok
[INFO] [stdout] test kmer_ops::tests::test_process_multiple ... ok
[INFO] [stdout] test kmer_ops::tests::test_kmer_rolling_hash ... ok
[INFO] [stdout] test kmer_ops::tests::test_multiple_k ... ok
[INFO] [stdout] test kmer_ops::tests::test_various_thresholds ... ok
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/nucleaze-43392299e77e9659)
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 33 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.12s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 33 tests
[INFO] [stdout] test kmer_ops::tests::test_bit_cap_calculation ... ok
[INFO] [stdout] test kmer_ops::tests::test_encode_longer_sequence ... ok
[INFO] [stdout] test kmer_ops::tests::test_encode_multiple_bases ... ok
[INFO] [stdout] test kmer_ops::tests::test_canonical_encoding_behavior ... ok
[INFO] [stdout] test kmer_ops::tests::test_encode_single_base ... ok
[INFO] [stdout] test kmer_ops::tests::test_encoding_bit_length ... ok
[INFO] [stdout] test kmer_ops::tests::test_encoding_consistency ... ok
[INFO] [stdout] test kmer_ops::tests::test_kmer_processor_diff_vars ... ok
[INFO] [stdout] test kmer_ops::tests::test_empty_reference_set ... ok
[INFO] [stdout] test kmer_ops::tests::test_kmer_processor_normal_vars ... ok
[INFO] [stdout] test kmer_ops::tests::test_palindromic_sequences ... ok
[INFO] [stdout] test kmer_ops::tests::test_process_read_too_short ... ok
[INFO] [stdout] test kmer_ops::tests::test_minimum_k_value ... ok
[INFO] [stdout] test kmer_ops::tests::test_duplicate_kmers ... ok
[INFO] [stdout] test kmer_ops::tests::test_rc_refs ... ok
[INFO] [stdout] test kmer_ops::tests::test_kmer_rolling_hash ... ok
[INFO] [stdout] test kmer_ops::tests::test_single_sequence ... ok
[INFO] [stdout] test kmer_ops::tests::test_sequence_length_k_plus_one ... ok
[INFO] [stdout] test kmer_ops::tests::test_sequence_exactly_k_length ... ok
[INFO] [stdout] test kmer_ops::tests::test_threshold_one ... ok
[INFO] [stdout] test kmer_ops::tests::test_repeated_bases ... ok
[INFO] [stdout] test kmer_ops::tests::test_sequence_length_k ... ok
[INFO] [stdout] test kmer_ops::tests::test_threshold_higher ... ok
[INFO] [stdout] test kmer_ops::tests::test_process_read_no_match ... ok
[INFO] [stdout] test kmer_ops::tests::test_process_read_meets_threshold ... ok
[INFO] [stdout] test kmer_ops::tests::test_process_read_partial_match_below_threshold ... ok
[INFO] [stdout] test kmer_ops::tests::test_large_reference_set ... ok
[INFO] [stdout] test kmer_ops::tests::test_process_multiple ... ok
[INFO] [stdout] test kmer_ops::tests::test_long_sequence_processing ... ok
[INFO] [stdout] test kmer_ops::tests::test_canonical ... ok
[INFO] [stdout] test kmer_ops::tests::test_process_read_exact_match ... ok
[INFO] [stdout] test kmer_ops::tests::test_various_thresholds ... ok
[INFO] [stdout] test kmer_ops::tests::test_multiple_k ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 33 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.03s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/integrations.rs (/opt/rustwide/target/debug/deps/integrations-8733c9f925a3f869)
[INFO] [stdout] 
[INFO] [stdout] running 22 tests
[INFO] [stdout] test test_duplicate_file_args_error ... ok
[INFO] [stdout] test test_duplicate_read_files ... ok
[INFO] [stdout] test test_missing_required_args ... ok
[INFO] [stdout] test test_filtering_ambiguous_sequences ... ok
[INFO] [stdout] test test_paired_input_files ... ok
[INFO] [stdout] test test_paired_in_inter_out ... ok
[INFO] [stdout] test test_ref_with_short_seqs_errors ... ok
[INFO] [stdout] test test_basic_filtering_unpaired ... ok
[INFO] [stdout] test test_interleaved_input_separate_output ... ok
[INFO] [stdout] test test_missing_interleaved_flag_failure ... ok
[INFO] [stdout] test test_interleaved ... ok
[INFO] [stdout] test test_inter_in_paired_out ... ok
[INFO] [stdout] test test_canonical_kmers ... ok
[INFO] [stdout] test test_threads_argument ... ok
[INFO] [stdout] test test_fasta_output_format ... ok
[INFO] [stdout] test test_memory_allocation_limits ... ok
[INFO] [stdout] test test_inter_in_paired_out_no_flag ... ok
[INFO] [stdout] test test_serialized_reference_persistence ... ok
[INFO] [stdout] test test_minhits_threshold ... ok
[INFO] [stdout] test test_serialized_reference ... ok
[INFO] [stdout] test test_different_k_values ... ok
[INFO] [stdout] test test_metadata_kmer_functional ... ok
[INFO] [stderr]    Doc-tests nucleaze
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 22 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.19s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "44228ab5411342f405fc2934c75fc7cd4c414aebcb71876109685f0d590496c8", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "44228ab5411342f405fc2934c75fc7cd4c414aebcb71876109685f0d590496c8", kill_on_drop: false }`
[INFO] [stdout] 44228ab5411342f405fc2934c75fc7cd4c414aebcb71876109685f0d590496c8