[INFO] cloning repository https://github.com/kgori/alignomatic
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/kgori/alignomatic" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkgori%2Falignomatic", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkgori%2Falignomatic'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] df45c7126ade2e424f0738fc7f4ed59f4e056640
[INFO] testing kgori/alignomatic against master#2fd6efc32704647e64d3d646d21c4c68eae100e4 for pr-149852-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkgori%2Falignomatic" "/workspace/builds/worker-4-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/kgori/alignomatic
[INFO] finished tweaking git repo https://github.com/kgori/alignomatic
[INFO] tweaked toml for git repo https://github.com/kgori/alignomatic written to /workspace/builds/worker-4-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/kgori/alignomatic on toolchain 2fd6efc32704647e64d3d646d21c4c68eae100e4
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+2fd6efc32704647e64d3d646d21c4c68eae100e4" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/kgori/alignomatic already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+2fd6efc32704647e64d3d646d21c4c68eae100e4" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Updating git repository `https://github.com/kgori/rust-bwa.git`
[INFO] [stderr]     Updating git submodule `https://github.com/10XGenomics/bwa.git`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded custom_derive v0.1.7
[INFO] [stderr]   Downloaded ieee754 v0.2.6
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded niffler v2.7.0
[INFO] [stderr]   Downloaded bgzf v0.2.0
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded libdeflater v0.7.5
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded liblzma v0.3.6
[INFO] [stderr]   Downloaded wide v0.7.32
[INFO] [stderr]   Downloaded jiff-static v0.2.8
[INFO] [stderr]   Downloaded rust-htslib v0.49.0
[INFO] [stderr]   Downloaded libdeflate-sys v0.7.5
[INFO] [stderr]   Downloaded portable-atomic v1.11.0
[INFO] [stderr]   Downloaded bio v2.2.0
[INFO] [stderr]   Downloaded jiff v0.2.8
[INFO] [stderr]   Downloaded libz-sys v1.1.22
[INFO] [stderr]   Downloaded liblzma-sys v0.3.13
[INFO] [stderr]   Downloaded hts-sys v2.2.0
[INFO] [stderr]   Downloaded bgzip v0.3.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:aa71247004a7fa38d13ec170f48f06cdedf5bc50b2a8645e56ed7e992e6fa513" "/opt/rustwide/cargo-home/bin/cargo" "+2fd6efc32704647e64d3d646d21c4c68eae100e4" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 7b64e69e81d34ee28e57b9f82bbfaae8b2b67a2f6bbc2fec71d5de900fe8ac4a
[INFO] running `Command { std: "docker" "start" "-a" "7b64e69e81d34ee28e57b9f82bbfaae8b2b67a2f6bbc2fec71d5de900fe8ac4a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "7b64e69e81d34ee28e57b9f82bbfaae8b2b67a2f6bbc2fec71d5de900fe8ac4a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7b64e69e81d34ee28e57b9f82bbfaae8b2b67a2f6bbc2fec71d5de900fe8ac4a", kill_on_drop: false }`
[INFO] [stdout] 7b64e69e81d34ee28e57b9f82bbfaae8b2b67a2f6bbc2fec71d5de900fe8ac4a
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:aa71247004a7fa38d13ec170f48f06cdedf5bc50b2a8645e56ed7e992e6fa513" "/opt/rustwide/cargo-home/bin/cargo" "+2fd6efc32704647e64d3d646d21c4c68eae100e4" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] be8bf16065b0275c1e86824a5e85e8d2941654ad2fba617b44e8b595a8d31cf3
[INFO] running `Command { std: "docker" "start" "-a" "be8bf16065b0275c1e86824a5e85e8d2941654ad2fba617b44e8b595a8d31cf3", kill_on_drop: false }`
[INFO] [stderr]    Compiling syn v2.0.100
[INFO] [stderr]    Compiling jobserver v0.1.33
[INFO] [stderr]    Compiling libm v0.2.11
[INFO] [stderr]    Compiling zerocopy v0.8.24
[INFO] [stderr]    Compiling glob v0.3.2
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling getrandom v0.2.15
[INFO] [stderr]    Compiling aho-corasick v1.1.3
[INFO] [stderr]    Compiling regex-syntax v0.8.5
[INFO] [stderr]    Compiling libloading v0.8.6
[INFO] [stderr]    Compiling matrixmultiply v0.3.9
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling getrandom v0.3.2
[INFO] [stderr]    Compiling bindgen v0.69.5
[INFO] [stderr]    Compiling either v1.15.0
[INFO] [stderr]    Compiling bytemuck v1.22.0
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling bitflags v2.9.0
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling itertools v0.12.1
[INFO] [stderr]    Compiling safe_arch v0.7.4
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling hashbrown v0.15.2
[INFO] [stderr]    Compiling cc v1.2.19
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]    Compiling zstd-safe v7.2.4
[INFO] [stderr]    Compiling miniz_oxide v0.8.8
[INFO] [stderr]    Compiling anyhow v1.0.98
[INFO] [stderr]    Compiling rand_core v0.9.3
[INFO] [stderr]    Compiling indexmap v2.9.0
[INFO] [stderr]    Compiling form_urlencoded v1.2.1
[INFO] [stderr]    Compiling csv-core v0.1.12
[INFO] [stderr]    Compiling wide v0.7.32
[INFO] [stderr]    Compiling regex-automata v0.4.9
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling fixedbitset v0.5.7
[INFO] [stderr]    Compiling bit-vec v0.8.0
[INFO] [stderr]    Compiling flate2 v1.1.1
[INFO] [stderr]    Compiling num-integer v0.1.46
[INFO] [stderr]    Compiling num-complex v0.4.6
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]    Compiling approx v0.5.1
[INFO] [stderr]    Compiling num-rational v0.4.2
[INFO] [stderr]    Compiling cmake v0.1.54
[INFO] [stderr]    Compiling bit-set v0.8.0
[INFO] [stderr]    Compiling petgraph v0.7.1
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling ndarray v0.16.1
[INFO] [stderr]    Compiling ordered-float v5.0.0
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling editdistancek v1.0.2
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling strum v0.26.3
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling triple_accel v0.4.0
[INFO] [stderr]    Compiling bytecount v0.6.8
[INFO] [stderr]    Compiling clap_builder v4.5.36
[INFO] [stderr]    Compiling jiff v0.2.8
[INFO] [stderr]    Compiling num_cpus v1.16.0
[INFO] [stderr]    Compiling zstd-sys v2.0.15+zstd.1.5.7
[INFO] [stderr]    Compiling libz-sys v1.1.22
[INFO] [stderr]    Compiling libdeflate-sys v0.7.5
[INFO] [stderr]    Compiling liblzma-sys v0.3.13
[INFO] [stderr]    Compiling ppv-lite86 v0.2.21
[INFO] [stderr] error: could not compile `regex-automata` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/2fd6efc32704647e64d3d646d21c4c68eae100e4/bin/rustc --crate-name regex_automata --edition=2021 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/regex-automata-0.4.9/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no -C debuginfo=2 --cfg 'feature="alloc"' --cfg 'feature="dfa-onepass"' --cfg 'feature="hybrid"' --cfg 'feature="meta"' --cfg 'feature="nfa-backtrack"' --cfg 'feature="nfa-pikevm"' --cfg 'feature="nfa-thompson"' --cfg 'feature="perf-inline"' --cfg 'feature="perf-literal"' --cfg 'feature="perf-literal-multisubstring"' --cfg 'feature="perf-literal-substring"' --cfg 'feature="std"' --cfg 'feature="syntax"' --cfg 'feature="unicode"' --cfg 'feature="unicode-age"' --cfg 'feature="unicode-bool"' --cfg 'feature="unicode-case"' --cfg 'feature="unicode-gencat"' --cfg 'feature="unicode-perl"' --cfg 'feature="unicode-script"' --cfg 'feature="unicode-segment"' --cfg 'feature="unicode-word-boundary"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("alloc", "default", "dfa", "dfa-build", "dfa-onepass", "dfa-search", "hybrid", "internal-instrument", "internal-instrument-pikevm", "logging", "meta", "nfa", "nfa-backtrack", "nfa-pikevm", "nfa-thompson", "perf", "perf-inline", "perf-literal", "perf-literal-multisubstring", "perf-literal-substring", "std", "syntax", "unicode", "unicode-age", "unicode-bool", "unicode-case", "unicode-gencat", "unicode-perl", "unicode-script", "unicode-segment", "unicode-word-boundary"))' -C metadata=fd22983c6f1d11d8 -C extra-filename=-e5a04f2a4e38f039 --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern aho_corasick=/opt/rustwide/target/debug/deps/libaho_corasick-bbf1a4f0088c0f15.rmeta --extern memchr=/opt/rustwide/target/debug/deps/libmemchr-4f0714dc45d95749.rmeta --extern regex_syntax=/opt/rustwide/target/debug/deps/libregex_syntax-13fc688ae7f36982.rmeta --cap-lints allow --cap-lints=forbid` (signal: 9, SIGKILL: kill)
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] running `Command { std: "docker" "inspect" "be8bf16065b0275c1e86824a5e85e8d2941654ad2fba617b44e8b595a8d31cf3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "be8bf16065b0275c1e86824a5e85e8d2941654ad2fba617b44e8b595a8d31cf3", kill_on_drop: false }`
[INFO] [stdout] be8bf16065b0275c1e86824a5e85e8d2941654ad2fba617b44e8b595a8d31cf3