[INFO] cloning repository https://github.com/ggraham/gastair [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/ggraham/gastair" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fggraham%2Fgastair", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fggraham%2Fgastair'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 0eefebfdf802803064c309c5b26f18fa89a672ee [INFO] testing ggraham/gastair against master#2fd6efc32704647e64d3d646d21c4c68eae100e4 for pr-149852-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fggraham%2Fgastair" "/workspace/builds/worker-3-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-3-tc1/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/ggraham/gastair [INFO] finished tweaking git repo https://github.com/ggraham/gastair [INFO] tweaked toml for git repo https://github.com/ggraham/gastair written to /workspace/builds/worker-3-tc1/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/ggraham/gastair on toolchain 2fd6efc32704647e64d3d646d21c4c68eae100e4 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+2fd6efc32704647e64d3d646d21c4c68eae100e4" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/ggraham/gastair already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+2fd6efc32704647e64d3d646d21c4c68eae100e4" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded bitflags v2.4.2 [INFO] [stderr] Downloaded ieee754 v0.2.6 [INFO] [stderr] Downloaded stderrlog v0.6.0 [INFO] [stderr] Downloaded random v0.13.2 [INFO] [stderr] Downloaded bgzip v0.3.1 [INFO] [stderr] Downloaded assert_cmd v2.0.14 [INFO] [stderr] Downloaded openssl-sys v0.9.92 [INFO] [stderr] Downloaded clap v4.5.17 [INFO] [stderr] Downloaded ordered-float v4.2.1 [INFO] [stderr] Downloaded clap_derive v4.5.13 [INFO] [stderr] Downloaded clap_builder v4.5.17 [INFO] [stderr] Downloaded rust-htslib v0.46.0 [INFO] [stderr] Downloaded chrono v0.4.27 [INFO] [stderr] Downloaded regex v1.9.4 [INFO] [stderr] Downloaded clio v0.3.5 [INFO] [stderr] Downloaded probability v0.20.3 [INFO] [stderr] Downloaded libdeflate-sys v0.7.5 [INFO] [stderr] Downloaded bio-types v1.0.1 [INFO] [stderr] Downloaded predicates v3.1.0 [INFO] [stderr] Downloaded bio v2.0.3 [INFO] [stderr] Downloaded special v0.10.3 [INFO] [stderr] Downloaded fs-utils v1.1.4 [INFO] [stderr] Downloaded bstr v1.8.0 [INFO] [stderr] Downloaded regex-automata v0.3.7 [INFO] [stderr] Downloaded curl-sys v0.4.65+curl-8.2.1 [INFO] [stderr] Downloaded pariter v0.5.1 [INFO] [stderr] Downloaded hts-sys v2.1.4 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:aa71247004a7fa38d13ec170f48f06cdedf5bc50b2a8645e56ed7e992e6fa513" "/opt/rustwide/cargo-home/bin/cargo" "+2fd6efc32704647e64d3d646d21c4c68eae100e4" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 7f8ce31e6ea81caa2f6d905dd4db0b501403d969c7c30da88ad716a8b6a25bbb [INFO] running `Command { std: "docker" "start" "-a" "7f8ce31e6ea81caa2f6d905dd4db0b501403d969c7c30da88ad716a8b6a25bbb", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "7f8ce31e6ea81caa2f6d905dd4db0b501403d969c7c30da88ad716a8b6a25bbb", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7f8ce31e6ea81caa2f6d905dd4db0b501403d969c7c30da88ad716a8b6a25bbb", kill_on_drop: false }` [INFO] [stdout] 7f8ce31e6ea81caa2f6d905dd4db0b501403d969c7c30da88ad716a8b6a25bbb [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:aa71247004a7fa38d13ec170f48f06cdedf5bc50b2a8645e56ed7e992e6fa513" "/opt/rustwide/cargo-home/bin/cargo" "+2fd6efc32704647e64d3d646d21c4c68eae100e4" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 3a06f445e7cf7bc659d060109adff40c10f3cccf0e513058716da085970fe29c [INFO] running `Command { std: "docker" "start" "-a" "3a06f445e7cf7bc659d060109adff40c10f3cccf0e513058716da085970fe29c", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.158 [INFO] [stderr] Compiling proc-macro2 v1.0.86 [INFO] [stderr] Compiling unicode-ident v1.0.11 [INFO] [stderr] Compiling libm v0.2.7 [INFO] [stderr] Compiling crossbeam-utils v0.8.16 [INFO] [stderr] Compiling serde v1.0.188 [INFO] [stderr] Compiling bytemuck v1.13.1 [INFO] [stderr] Compiling num-traits v0.2.16 [INFO] [stderr] Compiling num-integer v0.1.45 [INFO] [stderr] Compiling matrixmultiply v0.3.7 [INFO] [stderr] Compiling thiserror v1.0.63 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling aho-corasick v1.0.4 [INFO] [stderr] Compiling lock_api v0.4.10 [INFO] [stderr] Compiling regex-syntax v0.7.5 [INFO] [stderr] Compiling parking_lot_core v0.9.8 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling safe_arch v0.7.1 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling anstyle-parse v0.2.1 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling rustversion v1.0.14 [INFO] [stderr] Compiling smallvec v1.11.1 [INFO] [stderr] Compiling rustix v0.38.34 [INFO] [stderr] Compiling glob v0.3.1 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling crc32fast v1.4.0 [INFO] [stderr] Compiling crossbeam-queue v0.3.8 [INFO] [stderr] Compiling anstyle v1.0.8 [INFO] [stderr] Compiling jobserver v0.1.26 [INFO] [stderr] Compiling quote v1.0.37 [INFO] [stderr] Compiling getrandom v0.2.10 [INFO] [stderr] Compiling wide v0.7.11 [INFO] [stderr] Compiling anstream v0.6.15 [INFO] [stderr] Compiling crossbeam-epoch v0.9.15 [INFO] [stderr] Compiling unicode-normalization v0.1.22 [INFO] [stderr] Compiling syn v2.0.77 [INFO] [stderr] Compiling cc v1.0.83 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling bitflags v2.4.2 [INFO] [stderr] Compiling percent-encoding v2.3.0 [INFO] [stderr] Compiling clap_lex v0.7.2 [INFO] [stderr] Compiling unicode-bidi v0.3.13 [INFO] [stderr] Compiling anyhow v1.0.89 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling log v0.4.22 [INFO] [stderr] Compiling linux-raw-sys v0.4.13 [INFO] [stderr] Compiling clap_builder v4.5.17 [INFO] [stderr] Compiling crossbeam-deque v0.8.3 [INFO] [stderr] Compiling cmake v0.1.50 [INFO] [stderr] Compiling openssl-src v111.27.0+1.1.1v [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling num-complex v0.4.4 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling rayon-core v1.12.1 [INFO] [stderr] Compiling idna v0.4.0 [INFO] [stderr] Compiling form_urlencoded v1.2.0 [INFO] [stderr] Compiling miniz_oxide v0.7.2 [INFO] [stderr] Compiling indexmap v2.0.0 [INFO] [stderr] Compiling num-rational v0.4.1 [INFO] [stderr] Compiling parking_lot v0.12.1 [INFO] [stderr] Compiling openssl-sys v0.9.92 [INFO] [stderr] Compiling libz-sys v1.1.16 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Compiling libdeflate-sys v0.7.5 [INFO] [stderr] Compiling curl-sys v0.4.65+curl-8.2.1 [INFO] [stderr] Compiling regex-automata v0.3.7 [INFO] [stderr] Compiling hts-sys v2.1.4 [INFO] [stderr] Compiling simba v0.6.0 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling crossbeam-channel v0.5.8 [INFO] [stderr] Compiling is-terminal v0.4.12 [INFO] [stderr] Compiling csv-core v0.1.10 [INFO] [stderr] Compiling iana-time-zone v0.1.57 [INFO] [stderr] Compiling bit-vec v0.8.0 [INFO] [stderr] Compiling fixedbitset v0.4.2 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling fastrand v2.0.1 [INFO] [stderr] Compiling bit-set v0.8.0 [INFO] [stderr] Compiling chrono v0.4.27 [INFO] [stderr] Compiling petgraph v0.6.4 [INFO] [stderr] Compiling thread_local v1.1.7 [INFO] [stderr] Compiling crossbeam v0.8.2 [INFO] [stderr] Compiling flate2 v1.0.28 [INFO] [stderr] Compiling scheduled-thread-pool v0.2.7 [INFO] [stderr] Compiling rayon v1.10.0 [INFO] [stderr] Compiling ndarray v0.15.6 [INFO] [stderr] Compiling url v2.4.1 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling ordered-float v4.2.1 [INFO] [stderr] Compiling tempfile v3.10.1 [INFO] [stderr] Compiling special v0.10.3 [INFO] [stderr] Compiling num_cpus v1.16.0 [INFO] [stderr] Compiling regex v1.9.4 [INFO] [stderr] Compiling itertools v0.11.0 [INFO] [stderr] Compiling strum v0.25.0 [INFO] [stderr] Compiling triple_accel v0.4.0 [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling bytecount v0.6.3 [INFO] [stderr] Compiling random v0.13.2 [INFO] [stderr] Compiling editdistancek v1.0.2 [INFO] [stderr] Compiling probability v0.20.3 [INFO] [stderr] Compiling stderrlog v0.6.0 [INFO] [stderr] Compiling pariter v0.5.1 [INFO] [stderr] Compiling r2d2 v0.8.10 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling enum-map-derive v0.6.0 [INFO] [stderr] Compiling enum-map v1.1.1 [INFO] [stderr] Compiling serde_derive v1.0.188 [INFO] [stderr] Compiling thiserror-impl v1.0.63 [INFO] [stderr] Compiling strum_macros v0.25.2 [INFO] [stderr] Compiling clap_derive v4.5.13 [INFO] [stderr] Compiling nalgebra v0.29.0 [INFO] [stderr] Compiling bgzip v0.3.1 [INFO] [stderr] Compiling bio-types v1.0.1 [INFO] [stderr] Compiling clap v4.5.17 [INFO] [stderr] Compiling clio v0.3.5 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling multimap v0.8.3 [INFO] [stderr] Compiling csv v1.2.2 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling statrs v0.16.0 [INFO] [stderr] Compiling bio v2.0.3 [INFO] [stderr] Compiling rust-htslib v0.46.0 [INFO] [stderr] Compiling rastair v0.8.2 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `error` [INFO] [stdout] --> src/operations/count_variants/mod.rs:3:18 [INFO] [stdout] | [INFO] [stdout] 3 | use log::{debug, error, info}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/utils/extensions.rs:117:35 [INFO] [stdout] | [INFO] [stdout] 117 | fn from_region_string(region: &str) -> Result; [INFO] [stdout] | ^^^^ ^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 117 | fn from_region_string(region: &str) -> Result>; [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/utils/extensions.rs:122:35 [INFO] [stdout] | [INFO] [stdout] 122 | fn from_region_string(region: &str) -> Result [INFO] [stdout] | ^^^^ ^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 122 | fn from_region_string(region: &str) -> Result> [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `arg` and `command` [INFO] [stdout] --> src/main.rs:2:12 [INFO] [stdout] | [INFO] [stdout] 2 | use clap::{arg, command, value_parser, Parser, Subcommand}; [INFO] [stdout] | ^^^ ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 48s [INFO] running `Command { std: "docker" "inspect" "3a06f445e7cf7bc659d060109adff40c10f3cccf0e513058716da085970fe29c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3a06f445e7cf7bc659d060109adff40c10f3cccf0e513058716da085970fe29c", kill_on_drop: false }` [INFO] [stdout] 3a06f445e7cf7bc659d060109adff40c10f3cccf0e513058716da085970fe29c [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:aa71247004a7fa38d13ec170f48f06cdedf5bc50b2a8645e56ed7e992e6fa513" "/opt/rustwide/cargo-home/bin/cargo" "+2fd6efc32704647e64d3d646d21c4c68eae100e4" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 4594a7971b08fb3bb557ab4a5216735765e55cad452be2ed3327ff31f9837b5f [INFO] running `Command { std: "docker" "start" "-a" "4594a7971b08fb3bb557ab4a5216735765e55cad452be2ed3327ff31f9837b5f", kill_on_drop: false }` [INFO] [stderr] Compiling predicates-core v1.0.6 [INFO] [stderr] Compiling float-cmp v0.9.0 [INFO] [stderr] Compiling regex-automata v0.4.6 [INFO] [stderr] Compiling assert_cmd v2.0.14 [INFO] [stderr] Compiling difflib v0.4.0 [INFO] [stderr] Compiling normalize-line-endings v0.3.0 [INFO] [stderr] Compiling termtree v0.4.1 [INFO] [stderr] Compiling wait-timeout v0.2.0 [INFO] [stdout] warning: unused import: `error` [INFO] [stdout] --> src/operations/count_variants/mod.rs:3:18 [INFO] [stdout] | [INFO] [stdout] 3 | use log::{debug, error, info}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/utils/extensions.rs:117:35 [INFO] [stdout] | [INFO] [stdout] 117 | fn from_region_string(region: &str) -> Result; [INFO] [stdout] | ^^^^ ^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 117 | fn from_region_string(region: &str) -> Result>; [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/utils/extensions.rs:122:35 [INFO] [stdout] | [INFO] [stdout] 122 | fn from_region_string(region: &str) -> Result [INFO] [stdout] | ^^^^ ^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 122 | fn from_region_string(region: &str) -> Result> [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `arg` and `command` [INFO] [stdout] --> src/main.rs:2:12 [INFO] [stdout] | [INFO] [stdout] 2 | use clap::{arg, command, value_parser, Parser, Subcommand}; [INFO] [stdout] | ^^^ ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling predicates-tree v1.0.9 [INFO] [stderr] Compiling predicates v3.1.0 [INFO] [stderr] Compiling bstr v1.8.0 [INFO] [stderr] Compiling rastair v0.8.2 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `error` [INFO] [stdout] --> src/operations/count_variants/mod.rs:3:18 [INFO] [stdout] | [INFO] [stdout] 3 | use log::{debug, error, info}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `arg` and `command` [INFO] [stdout] --> src/main.rs:2:12 [INFO] [stdout] | [INFO] [stdout] 2 | use clap::{arg, command, value_parser, Parser, Subcommand}; [INFO] [stdout] | ^^^ ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/utils/extensions.rs:117:35 [INFO] [stdout] | [INFO] [stdout] 117 | fn from_region_string(region: &str) -> Result; [INFO] [stdout] | ^^^^ ^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 117 | fn from_region_string(region: &str) -> Result>; [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/utils/extensions.rs:122:35 [INFO] [stdout] | [INFO] [stdout] 122 | fn from_region_string(region: &str) -> Result [INFO] [stdout] | ^^^^ ^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 122 | fn from_region_string(region: &str) -> Result> [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 3.23s [INFO] running `Command { std: "docker" "inspect" "4594a7971b08fb3bb557ab4a5216735765e55cad452be2ed3327ff31f9837b5f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4594a7971b08fb3bb557ab4a5216735765e55cad452be2ed3327ff31f9837b5f", kill_on_drop: false }` [INFO] [stdout] 4594a7971b08fb3bb557ab4a5216735765e55cad452be2ed3327ff31f9837b5f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:aa71247004a7fa38d13ec170f48f06cdedf5bc50b2a8645e56ed7e992e6fa513" "/opt/rustwide/cargo-home/bin/cargo" "+2fd6efc32704647e64d3d646d21c4c68eae100e4" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 90793756a8e2c0900be9b30729d9b068e26d289369eebca92b413692e741e4d3 [INFO] running `Command { std: "docker" "start" "-a" "90793756a8e2c0900be9b30729d9b068e26d289369eebca92b413692e741e4d3", kill_on_drop: false }` [INFO] [stderr] warning: unused import: `error` [INFO] [stderr] --> src/operations/count_variants/mod.rs:3:18 [INFO] [stderr] | [INFO] [stderr] 3 | use log::{debug, error, info}; [INFO] [stderr] | ^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stderr] --> src/utils/extensions.rs:117:35 [INFO] [stderr] | [INFO] [stderr] 117 | fn from_region_string(region: &str) -> Result; [INFO] [stderr] | ^^^^ ^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stderr] | | [INFO] [stderr] | the lifetime is elided here [INFO] [stderr] | [INFO] [stderr] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stderr] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stderr] help: use `'_` for type paths [INFO] [stderr] | [INFO] [stderr] 117 | fn from_region_string(region: &str) -> Result>; [INFO] [stderr] | ++++ [INFO] [stderr] [INFO] [stderr] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stderr] --> src/utils/extensions.rs:122:35 [INFO] [stderr] | [INFO] [stderr] 122 | fn from_region_string(region: &str) -> Result [INFO] [stderr] | ^^^^ ^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stderr] | | [INFO] [stderr] | the lifetime is elided here [INFO] [stderr] | [INFO] [stderr] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stderr] help: use `'_` for type paths [INFO] [stderr] | [INFO] [stderr] 122 | fn from_region_string(region: &str) -> Result> [INFO] [stderr] | ++++ [INFO] [stderr] [INFO] [stderr] warning: `rastair` (lib) generated 3 warnings (run `cargo fix --lib -p rastair` to apply 3 suggestions) [INFO] [stderr] warning: unused imports: `arg` and `command` [INFO] [stderr] --> src/main.rs:2:12 [INFO] [stderr] | [INFO] [stderr] 2 | use clap::{arg, command, value_parser, Parser, Subcommand}; [INFO] [stderr] | ^^^ ^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: `rastair` (bin "rastair") generated 1 warning (run `cargo fix --bin "rastair" -p rastair` to apply 1 suggestion) [INFO] [stderr] warning: `rastair` (lib test) generated 3 warnings (3 duplicates) [INFO] [stderr] warning: `rastair` (bin "rastair" test) generated 1 warning (1 duplicate) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.12s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/rastair-76a34f53da837149) [INFO] [stdout] [INFO] [stdout] running 25 tests [INFO] [stdout] test operations::count_reads::tests::can_create_config ... ok [INFO] [stdout] test operations::count_variants::variant_counter::tests::can_create_config ... ok [INFO] [stdout] test operations::count_reads::tests::can_set_single_end_mode ... ok [INFO] [stdout] test operations::count_variants::variant_counter::tests::can_filter_with_masking_single_end ... ok [INFO] [stdout] test operations::tests::can_create_from_string ... ok [INFO] [stdout] test operations::count_variants::variant_counter::tests::can_set_single_end_mode ... ok [INFO] [stdout] test operations::tests::fails_with_letters ... ok [INFO] [stdout] test operations::tests::tolerates_zero ... ok [INFO] [stdout] test operations::count_variants::variant_counter::tests::can_filter_with_masking_1 ... ok [INFO] [stdout] test operations::count_variants::variant_counter::tests::can_filter_alignments ... ok [INFO] [stdout] test utils::extensions::tests::orientation_ambiguous ... ok [INFO] [stdout] test utils::extensions::tests::orientation_strict ... ok [INFO] [stdout] test sequence_segment::tests::can_find_cpgs ... ok [INFO] [stdout] test sequence_segment::tests::can_check_end ... ok [INFO] [stdout] test sequence_segment::tests::can_find_mixed_case ... ok [INFO] [stdout] test sequence_segment::tests::can_create_segment_iterator ... ok [INFO] [stdout] test sequence_segment::tests::can_iterate ... ok [INFO] [stdout] test utils::extensions::tests::single_end_forward_is_ot ... ok [INFO] [stdout] test utils::extensions::tests::orientation_easy ... ok [INFO] [stdout] test operations::count_variants::variant_counter::tests::can_filter_with_masking_2 ... ok [INFO] [stdout] test utils::extensions::tests::region_from_string ... ok [INFO] [stdout] test utils::extensions::tests::single_end_reverse_is_ob ... ok [INFO] [stdout] test sequence_segment::tests::can_find_split_cpgs ... ok [INFO] [stdout] test utils::extensions::tests::fail_on_incorrect_string ... ok [INFO] [stdout] test operations::count_reads::tests::can_create_counter ... FAILED [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- operations::count_reads::tests::can_create_counter stdout ---- [INFO] [stdout] Error: Failed to read fasta from "test_data/test.fasta" [INFO] [stdout] [INFO] [stdout] Caused by: [INFO] [stdout] No such file or directory (os error 2) [INFO] [stdout] [INFO] [stdout] Stack backtrace: [INFO] [stdout] 0: ::ext_context:: [INFO] [stdout] at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/anyhow-1.0.89/src/backtrace.rs:27:14 [INFO] [stdout] 1: , csv::error::Error> as anyhow::Context, csv::error::Error>>::with_context::>::from_file<&str>::{closure#1}> [INFO] [stdout] at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/anyhow-1.0.89/src/context.rs:65:37 [INFO] [stdout] 2: >::from_file::<&str> [INFO] [stdout] at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/bio-2.0.3/src/io/fasta.rs:420:14 [INFO] [stdout] 3: rastair::operations::count_reads::tests::can_create_counter [INFO] [stdout] at ./src/operations/count_reads/mod.rs:1041:22 [INFO] [stdout] 4: rastair::operations::count_reads::tests::can_create_counter::{closure#0} [INFO] [stdout] at ./src/operations/count_reads/mod.rs:1034:32 [INFO] [stdout] 5: >::call_once [INFO] [stdout] at /rustc/2fd6efc32704647e64d3d646d21c4c68eae100e4/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 6: core::result::Result<(), alloc::string::String> as core::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/2fd6efc32704647e64d3d646d21c4c68eae100e4/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 7: test::__rust_begin_short_backtrace::, fn() -> core::result::Result<(), alloc::string::String>> [INFO] [stdout] at /rustc/2fd6efc32704647e64d3d646d21c4c68eae100e4/library/test/src/lib.rs:663:18 [INFO] [stdout] 8: test::run_test_in_process::{closure#0} [INFO] [stdout] at /rustc/2fd6efc32704647e64d3d646d21c4c68eae100e4/library/test/src/lib.rs:686:74 [INFO] [stdout] 9: as core::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/2fd6efc32704647e64d3d646d21c4c68eae100e4/library/core/src/panic/unwind_safe.rs:274:9 [INFO] [stdout] 10: std::panicking::catch_unwind::do_call::, core::result::Result<(), alloc::string::String>> [INFO] [stdout] at /rustc/2fd6efc32704647e64d3d646d21c4c68eae100e4/library/std/src/panicking.rs:581:40 [INFO] [stdout] 11: std::panicking::catch_unwind::, core::panic::unwind_safe::AssertUnwindSafe> [INFO] [stdout] at /rustc/2fd6efc32704647e64d3d646d21c4c68eae100e4/library/std/src/panicking.rs:544:19 [INFO] [stdout] 12: std::panic::catch_unwind::, core::result::Result<(), alloc::string::String>> [INFO] [stdout] at /rustc/2fd6efc32704647e64d3d646d21c4c68eae100e4/library/std/src/panic.rs:359:14 [INFO] [stdout] 13: test::run_test_in_process [INFO] [stdout] at /rustc/2fd6efc32704647e64d3d646d21c4c68eae100e4/library/test/src/lib.rs:686:27 [INFO] [stdout] 14: test::run_test::{closure#0} [INFO] [stdout] at /rustc/2fd6efc32704647e64d3d646d21c4c68eae100e4/library/test/src/lib.rs:607:43 [INFO] [stdout] 15: test::run_test::{closure#1} [INFO] [stdout] at /rustc/2fd6efc32704647e64d3d646d21c4c68eae100e4/library/test/src/lib.rs:637:41 [INFO] [stdout] 16: std::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] at /rustc/2fd6efc32704647e64d3d646d21c4c68eae100e4/library/std/src/sys/backtrace.rs:166:18 [INFO] [stdout] 17: std::thread::lifecycle::spawn_unchecked::::{closure#1}::{closure#0} [INFO] [stdout] at /rustc/2fd6efc32704647e64d3d646d21c4c68eae100e4/library/std/src/thread/lifecycle.rs:91:13 [INFO] [stdout] 18: ::{closure#1}::{closure#0}> as core::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/2fd6efc32704647e64d3d646d21c4c68eae100e4/library/core/src/panic/unwind_safe.rs:274:9 [INFO] [stdout] 19: std::panicking::catch_unwind::do_call::::{closure#1}::{closure#0}>, ()> [INFO] [stdout] at /rustc/2fd6efc32704647e64d3d646d21c4c68eae100e4/library/std/src/panicking.rs:581:40 [INFO] [stdout] 20: std::panicking::catch_unwind::<(), core::panic::unwind_safe::AssertUnwindSafe::{closure#1}::{closure#0}>> [INFO] [stdout] at /rustc/2fd6efc32704647e64d3d646d21c4c68eae100e4/library/std/src/panicking.rs:544:19 [INFO] [stdout] 21: std::panic::catch_unwind::::{closure#1}::{closure#0}>, ()> [INFO] [stdout] at /rustc/2fd6efc32704647e64d3d646d21c4c68eae100e4/library/std/src/panic.rs:359:14 [INFO] [stdout] 22: std::thread::lifecycle::spawn_unchecked::::{closure#1} [INFO] [stdout] at /rustc/2fd6efc32704647e64d3d646d21c4c68eae100e4/library/std/src/thread/lifecycle.rs:89:26 [INFO] [stdout] 23: ::{closure#1} as core::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] at /rustc/2fd6efc32704647e64d3d646d21c4c68eae100e4/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 24: + core::marker::Send> as core::ops::function::FnOnce<()>>::call_once [INFO] [stdout] at /rustc/2fd6efc32704647e64d3d646d21c4c68eae100e4/library/alloc/src/boxed.rs:2206:9 [INFO] [stdout] 25: ::new::thread_start [INFO] [stdout] at /rustc/2fd6efc32704647e64d3d646d21c4c68eae100e4/library/std/src/sys/thread/unix.rs:119:17 [INFO] [stdout] 26: [INFO] [stdout] 27: clone [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] operations::count_reads::tests::can_create_counter [INFO] [stdout] [INFO] [stdout] test result: FAILED. 24 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.06s [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass `--lib` [INFO] running `Command { std: "docker" "inspect" "90793756a8e2c0900be9b30729d9b068e26d289369eebca92b413692e741e4d3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "90793756a8e2c0900be9b30729d9b068e26d289369eebca92b413692e741e4d3", kill_on_drop: false }` [INFO] [stdout] 90793756a8e2c0900be9b30729d9b068e26d289369eebca92b413692e741e4d3