[INFO] fetching crate microBioRust-seqmetrics 0.1.2...
[INFO] testing microBioRust-seqmetrics-0.1.2 against master#2fd6efc32704647e64d3d646d21c4c68eae100e4 for pr-149852-1
[INFO] extracting crate microBioRust-seqmetrics 0.1.2 into /workspace/builds/worker-6-tc1/source
[INFO] started tweaking crates.io crate microBioRust-seqmetrics 0.1.2
[INFO] finished tweaking crates.io crate microBioRust-seqmetrics 0.1.2
[INFO] tweaked toml for crates.io crate microBioRust-seqmetrics 0.1.2 written to /workspace/builds/worker-6-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate microBioRust-seqmetrics 0.1.2 on toolchain 2fd6efc32704647e64d3d646d21c4c68eae100e4
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+2fd6efc32704647e64d3d646d21c4c68eae100e4" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate microBioRust-seqmetrics 0.1.2 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+2fd6efc32704647e64d3d646d21c4c68eae100e4" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded semver v0.1.20
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded protein-translate v0.2.0
[INFO] [stderr]   Downloaded enum-map-derive v0.17.0
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded custom_derive v0.1.7
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded microBioRust v0.1.2
[INFO] [stderr]   Downloaded enum-map v2.7.3
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded statrs v0.18.0
[INFO] [stderr]   Downloaded bio v2.3.0
[INFO] [stderr]   Downloaded petgraph v0.8.2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:aa71247004a7fa38d13ec170f48f06cdedf5bc50b2a8645e56ed7e992e6fa513" "/opt/rustwide/cargo-home/bin/cargo" "+2fd6efc32704647e64d3d646d21c4c68eae100e4" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 8e98510fb2a340f51c38d1a8149e4fdb65fb65e972afeea4f6b37c5e89f2d6fa
[INFO] running `Command { std: "docker" "start" "-a" "8e98510fb2a340f51c38d1a8149e4fdb65fb65e972afeea4f6b37c5e89f2d6fa", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "8e98510fb2a340f51c38d1a8149e4fdb65fb65e972afeea4f6b37c5e89f2d6fa", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8e98510fb2a340f51c38d1a8149e4fdb65fb65e972afeea4f6b37c5e89f2d6fa", kill_on_drop: false }`
[INFO] [stdout] 8e98510fb2a340f51c38d1a8149e4fdb65fb65e972afeea4f6b37c5e89f2d6fa
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:aa71247004a7fa38d13ec170f48f06cdedf5bc50b2a8645e56ed7e992e6fa513" "/opt/rustwide/cargo-home/bin/cargo" "+2fd6efc32704647e64d3d646d21c4c68eae100e4" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 647cd686d93ee2a7a1d2a5f281b975d94c23ff60277282e45de1c5295e88cb61
[INFO] running `Command { std: "docker" "start" "-a" "647cd686d93ee2a7a1d2a5f281b975d94c23ff60277282e45de1c5295e88cb61", kill_on_drop: false }`
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[INFO] [stderr]    Compiling nalgebra v0.33.2
[INFO] [stderr]    Compiling bio-types v1.0.4
[INFO] [stderr]    Compiling serde v1.0.219
[INFO] [stderr]    Compiling clap v4.5.40
[INFO] [stderr]    Compiling multimap v0.10.1
[INFO] [stderr]    Compiling csv v1.3.1
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[INFO] [stderr]    Compiling statrs v0.18.0
[INFO] [stderr]    Compiling bio v2.3.0
[INFO] [stderr]    Compiling microBioRust v0.1.2
[INFO] [stderr]    Compiling microBioRust-seqmetrics v0.1.2 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 28s
[INFO] running `Command { std: "docker" "inspect" "647cd686d93ee2a7a1d2a5f281b975d94c23ff60277282e45de1c5295e88cb61", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "647cd686d93ee2a7a1d2a5f281b975d94c23ff60277282e45de1c5295e88cb61", kill_on_drop: false }`
[INFO] [stdout] 647cd686d93ee2a7a1d2a5f281b975d94c23ff60277282e45de1c5295e88cb61
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:aa71247004a7fa38d13ec170f48f06cdedf5bc50b2a8645e56ed7e992e6fa513" "/opt/rustwide/cargo-home/bin/cargo" "+2fd6efc32704647e64d3d646d21c4c68eae100e4" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 7c420f93ab22f0c78814638e59bed5acb69634b8a8dbda61359815823fbe1a41
[INFO] running `Command { std: "docker" "start" "-a" "7c420f93ab22f0c78814638e59bed5acb69634b8a8dbda61359815823fbe1a41", kill_on_drop: false }`
[INFO] [stderr]    Compiling microBioRust-seqmetrics v0.1.2 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 1.80s
[INFO] running `Command { std: "docker" "inspect" "7c420f93ab22f0c78814638e59bed5acb69634b8a8dbda61359815823fbe1a41", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7c420f93ab22f0c78814638e59bed5acb69634b8a8dbda61359815823fbe1a41", kill_on_drop: false }`
[INFO] [stdout] 7c420f93ab22f0c78814638e59bed5acb69634b8a8dbda61359815823fbe1a41
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:aa71247004a7fa38d13ec170f48f06cdedf5bc50b2a8645e56ed7e992e6fa513" "/opt/rustwide/cargo-home/bin/cargo" "+2fd6efc32704647e64d3d646d21c4c68eae100e4" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 1f0193e8cc3213b67b95a7aea48ead8fcd21364d7523d4396c56f0b36876314c
[INFO] running `Command { std: "docker" "start" "-a" "1f0193e8cc3213b67b95a7aea48ead8fcd21364d7523d4396c56f0b36876314c", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.17s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/microBioRust_seqmetrics-865f39f677de23d1)
[INFO] [stdout] 
[INFO] [stdout] running 5 tests
[INFO] [stdout] test metrics::tests::main ... ok
[INFO] [stdout] test metrics::tests::suggest_transmembrane_domains ... ok
[INFO] [stdout] test metrics::tests::count_aminos ... ok
[INFO] [stdout] test metrics::tests::collect_molecular_weight ... ok
[INFO] [stdout] test metrics::tests::aromaticity ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 5 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.05s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests microBioRust_seqmetrics
[INFO] [stdout] 
[INFO] [stdout] running 5 tests
[INFO] [stdout] test src/metrics.rs - metrics (line 147) ... ok
[INFO] [stdout] test src/metrics.rs - metrics (line 8) ... ok
[INFO] [stdout] test src/metrics.rs - metrics (line 59) ... ok
[INFO] [stdout] test src/metrics.rs - metrics (line 104) ... ok
[INFO] [stdout] test src/metrics.rs - metrics (line 197) ... FAILED
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout] 
[INFO] [stdout] ---- src/metrics.rs - metrics (line 197) stdout ----
[INFO] [stdout] Test executable failed (exit status: 1).
[INFO] [stdout] 
[INFO] [stdout] stdout:
[INFO] [stdout] gathering records
[INFO] [stdout] gathered ids
[INFO] [stdout] all sequences are the same length, proceeding
[INFO] [stdout] 
[INFO] [stdout] stderr:
[INFO] [stdout] Error: Read-only file system (os error 30)
[INFO] [stdout] 
[INFO] [stdout] Stack backtrace:
[INFO] [stdout]    0: <anyhow::Error as core::convert::From<std::io::error::Error>>::from
[INFO] [stdout]              at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/anyhow-1.0.98/src/backtrace.rs:27:14
[INFO] [stdout]    1: <core::result::Result<(), anyhow::Error> as core::ops::try_trait::FromResidual<core::result::Result<core::convert::Infallible, std::io::error::Error>>>::from_residual
[INFO] [stdout]              at /rustc/2fd6efc32704647e64d3d646d21c4c68eae100e4/library/core/src/result.rs:2189:27
[INFO] [stdout]    2: microBioRust_seqmetrics::write_dst_csv::write_distances_csv::{closure#0}
[INFO] [stdout]              at ./src/write_dst_csv.rs:7:16
[INFO] [stdout]    3: rust_out::main::{closure#0}
[INFO] [stdout]    4: <tokio::runtime::park::CachedParkThread>::block_on::<rust_out::main::{closure#0}>::{closure#0}
[INFO] [stdout]    5: <tokio::runtime::park::CachedParkThread>::block_on::<rust_out::main::{closure#0}>
[INFO] [stdout]    6: <tokio::runtime::context::blocking::BlockingRegionGuard>::block_on::<rust_out::main::{closure#0}>
[INFO] [stdout]    7: <tokio::runtime::scheduler::multi_thread::MultiThread>::block_on::<rust_out::main::{closure#0}>::{closure#0}
[INFO] [stdout]    8: tokio::runtime::context::runtime::enter_runtime::<<tokio::runtime::scheduler::multi_thread::MultiThread>::block_on<rust_out::main::{closure#0}>::{closure#0}, core::result::Result<(), anyhow::Error>>
[INFO] [stdout]    9: <tokio::runtime::scheduler::multi_thread::MultiThread>::block_on::<rust_out::main::{closure#0}>
[INFO] [stdout]   10: <tokio::runtime::runtime::Runtime>::block_on_inner::<rust_out::main::{closure#0}>
[INFO] [stdout]   11: <tokio::runtime::runtime::Runtime>::block_on::<rust_out::main::{closure#0}>
[INFO] [stdout]   12: rust_out::main
[INFO] [stdout]   13: <fn() -> core::result::Result<(), anyhow::Error> as core::ops::function::FnOnce<()>>::call_once
[INFO] [stdout]   14: std::sys::backtrace::__rust_begin_short_backtrace::<fn() -> core::result::Result<(), anyhow::Error>, core::result::Result<(), anyhow::Error>>
[INFO] [stdout]   15: std::rt::lang_start::<core::result::Result<(), anyhow::Error>>::{closure#0}
[INFO] [stdout]   16: <&dyn core::ops::function::Fn<(), Output = i32> + core::marker::Sync + core::panic::unwind_safe::RefUnwindSafe as core::ops::function::FnOnce<()>>::call_once
[INFO] [stdout]              at /rustc/2fd6efc32704647e64d3d646d21c4c68eae100e4/library/core/src/ops/function.rs:287:21
[INFO] [stdout]   17: std::panicking::catch_unwind::do_call::<&dyn core::ops::function::Fn<(), Output = i32> + core::marker::Sync + core::panic::unwind_safe::RefUnwindSafe, i32>
[INFO] [stdout]              at /rustc/2fd6efc32704647e64d3d646d21c4c68eae100e4/library/std/src/panicking.rs:581:40
[INFO] [stdout]   18: std::panicking::catch_unwind::<i32, &dyn core::ops::function::Fn<(), Output = i32> + core::marker::Sync + core::panic::unwind_safe::RefUnwindSafe>
[INFO] [stdout]              at /rustc/2fd6efc32704647e64d3d646d21c4c68eae100e4/library/std/src/panicking.rs:544:19
[INFO] [stdout]   19: std::panic::catch_unwind::<&dyn core::ops::function::Fn<(), Output = i32> + core::marker::Sync + core::panic::unwind_safe::RefUnwindSafe, i32>
[INFO] [stdout]              at /rustc/2fd6efc32704647e64d3d646d21c4c68eae100e4/library/std/src/panic.rs:359:14
[INFO] [stdout]   20: std::rt::lang_start_internal::{closure#0}
[INFO] [stdout]              at /rustc/2fd6efc32704647e64d3d646d21c4c68eae100e4/library/std/src/rt.rs:175:24
[INFO] [stdout]   21: std::panicking::catch_unwind::do_call::<std::rt::lang_start_internal::{closure#0}, isize>
[INFO] [stdout]              at /rustc/2fd6efc32704647e64d3d646d21c4c68eae100e4/library/std/src/panicking.rs:581:40
[INFO] [stdout]   22: std::panicking::catch_unwind::<isize, std::rt::lang_start_internal::{closure#0}>
[INFO] [stdout]              at /rustc/2fd6efc32704647e64d3d646d21c4c68eae100e4/library/std/src/panicking.rs:544:19
[INFO] [stdout]   23: std::panic::catch_unwind::<std::rt::lang_start_internal::{closure#0}, isize>
[INFO] [stdout]              at /rustc/2fd6efc32704647e64d3d646d21c4c68eae100e4/library/std/src/panic.rs:359:14
[INFO] [stdout]   24: std::rt::lang_start_internal
[INFO] [stdout]              at /rustc/2fd6efc32704647e64d3d646d21c4c68eae100e4/library/std/src/rt.rs:171:5
[INFO] [stdout]   25: std::rt::lang_start::<core::result::Result<(), anyhow::Error>>
[INFO] [stdout]   26: main
[INFO] [stdout]   27: <unknown>
[INFO] [stdout]   28: __libc_start_main
[INFO] [stdout]   29: _start
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout]     src/metrics.rs - metrics (line 197)
[INFO] [stdout] 
[INFO] [stdout] test result: FAILED. 4 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 1.47s
[INFO] [stdout] 
[INFO] [stderr] error: doctest failed, to rerun pass `--doc`
[INFO] running `Command { std: "docker" "inspect" "1f0193e8cc3213b67b95a7aea48ead8fcd21364d7523d4396c56f0b36876314c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "1f0193e8cc3213b67b95a7aea48ead8fcd21364d7523d4396c56f0b36876314c", kill_on_drop: false }`
[INFO] [stdout] 1f0193e8cc3213b67b95a7aea48ead8fcd21364d7523d4396c56f0b36876314c
