[INFO] cloning repository https://github.com/stela2502/bam_tide
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/stela2502/bam_tide" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstela2502%2Fbam_tide", kill_on_drop: false }`
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[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] e64ac02708b743ad37ae0bcea3a25bb9bcc35fec
[INFO] testing stela2502/bam_tide against try#bd7d74411512a3dd3b35d2f699c51dd2557c7e7e+cargoflags=-Zbuild-dir-new-layout for pr-149852-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstela2502%2Fbam_tide" "/workspace/builds/worker-6-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/stela2502/bam_tide
[INFO] finished tweaking git repo https://github.com/stela2502/bam_tide
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[INFO] validating manifest of git repo https://github.com/stela2502/bam_tide on toolchain bd7d74411512a3dd3b35d2f699c51dd2557c7e7e
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[INFO] [stderr]    Compiling bigtools v0.5.6
[INFO] [stderr]    Compiling rust-htslib v0.49.0
[INFO] [stderr]    Compiling bam_tide v0.4.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `scdata::scdata::MatrixValueType`
[INFO] [stdout]   --> src/mutation_processor.rs:18:5
[INFO] [stdout]    |
[INFO] [stdout] 18 | use scdata::scdata::MatrixValueType;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `min_mapping_quality`
[INFO] [stdout]    --> src/bed_data/bed_data.rs:259:73
[INFO] [stdout]     |
[INFO] [stdout] 259 |         cell_tag: &[u8;2], umi_tag: &[u8;2], add_introns:bool, only_r1: bool, min_mapping_quality:u8 ) {
[INFO] [stdout]     |                                                                               ^^^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_min_mapping_quality`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `lines` is never read
[INFO] [stdout]    --> src/bed_data/bed_data.rs:445:7
[INFO] [stdout]     |
[INFO] [stdout] 445 |             lines +=1;
[INFO] [stdout]     |             ^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = help: maybe it is overwritten before being read?
[INFO] [stdout]     = note: `#[warn(unused_assignments)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `fully_matched_exons` is never read
[INFO] [stdout]    --> src/gtf/gene.rs:139:21
[INFO] [stdout]     |
[INFO] [stdout] 139 |                     fully_matched_exons += 1;
[INFO] [stdout]     |                     ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = help: maybe it is overwritten before being read?
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `fully_matched_exons` is never read
[INFO] [stdout]    --> src/gtf/gene.rs:177:21
[INFO] [stdout]     |
[INFO] [stdout] 177 |                     fully_matched_exons += 1;
[INFO] [stdout]     |                     ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = help: maybe it is overwritten before being read?
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `found_chrs` is never read
[INFO] [stdout]    --> src/mutation_processor.rs:158:21
[INFO] [stdout]     |
[INFO] [stdout] 158 |                     found_chrs += 1;
[INFO] [stdout]     |                     ^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = help: maybe it is overwritten before being read?
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `ref_pos` is never read
[INFO] [stdout]   --> src/bin/bam2mut_hist.rs:86:21
[INFO] [stdout]    |
[INFO] [stdout] 86 |                     ref_pos += 1;
[INFO] [stdout]    |                     ^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = help: maybe it is overwritten before being read?
[INFO] [stdout]    = note: `#[warn(unused_assignments)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `ref_pos` is never read
[INFO] [stdout]   --> src/bin/bam2mut_hist.rs:96:21
[INFO] [stdout]    |
[INFO] [stdout] 96 |                     ref_pos += 1;
[INFO] [stdout]    |                     ^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = help: maybe it is overwritten before being read?
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 4m 00s
[INFO] running `Command { std: "docker" "inspect" "8f3e7a3ed694a5abd68cc94ae2697746cbcb1227b5dd0278d01eeb68ffc589dd", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8f3e7a3ed694a5abd68cc94ae2697746cbcb1227b5dd0278d01eeb68ffc589dd", kill_on_drop: false }`
[INFO] [stdout] 8f3e7a3ed694a5abd68cc94ae2697746cbcb1227b5dd0278d01eeb68ffc589dd
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:98afbf2d16093dec2546ff8915fddc74e65664aa03fc460b3712b1c2c54a33e4" "/opt/rustwide/cargo-home/bin/cargo" "+bd7d74411512a3dd3b35d2f699c51dd2557c7e7e" "test" "--frozen" "--no-run" "--message-format=json" "-Zbuild-dir-new-layout", kill_on_drop: false }`
[INFO] [stdout] 2e566aca74752225c8bc119f9c8deb1379c3994a190f7cf5f037ae8e6334c359
[INFO] running `Command { std: "docker" "start" "-a" "2e566aca74752225c8bc119f9c8deb1379c3994a190f7cf5f037ae8e6334c359", kill_on_drop: false }`
[INFO] [stdout] warning: unused import: `scdata::scdata::MatrixValueType`
[INFO] [stdout]   --> src/mutation_processor.rs:18:5
[INFO] [stdout]    |
[INFO] [stdout] 18 | use scdata::scdata::MatrixValueType;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `min_mapping_quality`
[INFO] [stdout]    --> src/bed_data/bed_data.rs:259:73
[INFO] [stdout]     |
[INFO] [stdout] 259 |         cell_tag: &[u8;2], umi_tag: &[u8;2], add_introns:bool, only_r1: bool, min_mapping_quality:u8 ) {
[INFO] [stdout]     |                                                                               ^^^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_min_mapping_quality`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `lines` is never read
[INFO] [stdout]    --> src/bed_data/bed_data.rs:445:7
[INFO] [stdout]     |
[INFO] [stdout] 445 |             lines +=1;
[INFO] [stdout]     |             ^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = help: maybe it is overwritten before being read?
[INFO] [stdout]     = note: `#[warn(unused_assignments)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `fully_matched_exons` is never read
[INFO] [stdout]    --> src/gtf/gene.rs:139:21
[INFO] [stdout]     |
[INFO] [stdout] 139 |                     fully_matched_exons += 1;
[INFO] [stdout]     |                     ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = help: maybe it is overwritten before being read?
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `fully_matched_exons` is never read
[INFO] [stdout]    --> src/gtf/gene.rs:177:21
[INFO] [stdout]     |
[INFO] [stdout] 177 |                     fully_matched_exons += 1;
[INFO] [stdout]     |                     ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = help: maybe it is overwritten before being read?
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `found_chrs` is never read
[INFO] [stdout]    --> src/mutation_processor.rs:158:21
[INFO] [stdout]     |
[INFO] [stdout] 158 |                     found_chrs += 1;
[INFO] [stdout]     |                     ^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = help: maybe it is overwritten before being read?
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]    Compiling bam_tide v0.4.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: value assigned to `ref_pos` is never read
[INFO] [stdout]   --> src/bin/bam2mut_hist.rs:86:21
[INFO] [stdout]    |
[INFO] [stdout] 86 |                     ref_pos += 1;
[INFO] [stdout]    |                     ^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = help: maybe it is overwritten before being read?
[INFO] [stdout]    = note: `#[warn(unused_assignments)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `ref_pos` is never read
[INFO] [stdout]   --> src/bin/bam2mut_hist.rs:96:21
[INFO] [stdout]    |
[INFO] [stdout] 96 |                     ref_pos += 1;
[INFO] [stdout]    |                     ^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = help: maybe it is overwritten before being read?
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::process::exit`
[INFO] [stdout]  --> tests/test-bam2mut_hist.rs:2:5
[INFO] [stdout]   |
[INFO] [stdout] 2 | use std::process::exit;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `ref_pos` is never read
[INFO] [stdout]   --> src/bin/bam2mut_hist.rs:86:21
[INFO] [stdout]    |
[INFO] [stdout] 86 |                     ref_pos += 1;
[INFO] [stdout]    |                     ^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = help: maybe it is overwritten before being read?
[INFO] [stdout]    = note: `#[warn(unused_assignments)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `ref_pos` is never read
[INFO] [stdout]   --> src/bin/bam2mut_hist.rs:96:21
[INFO] [stdout]    |
[INFO] [stdout] 96 |                     ref_pos += 1;
[INFO] [stdout]    |                     ^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = help: maybe it is overwritten before being read?
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashMap`
[INFO] [stdout]    --> src/bed_data/bed_data.rs:637:9
[INFO] [stdout]     |
[INFO] [stdout] 637 |     use std::collections::HashMap;
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::path::Path`
[INFO] [stdout]    --> src/bed_data/bed_data.rs:804:9
[INFO] [stdout]     |
[INFO] [stdout] 804 |     use std::path::Path;
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `min_mapping_quality`
[INFO] [stdout]    --> src/bed_data/bed_data.rs:259:73
[INFO] [stdout]     |
[INFO] [stdout] 259 |         cell_tag: &[u8;2], umi_tag: &[u8;2], add_introns:bool, only_r1: bool, min_mapping_quality:u8 ) {
[INFO] [stdout]     |                                                                               ^^^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_min_mapping_quality`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `lines` is never read
[INFO] [stdout]    --> src/bed_data/bed_data.rs:445:7
[INFO] [stdout]     |
[INFO] [stdout] 445 |             lines +=1;
[INFO] [stdout]     |             ^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = help: maybe it is overwritten before being read?
[INFO] [stdout]     = note: `#[warn(unused_assignments)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `fully_matched_exons` is never read
[INFO] [stdout]    --> src/gtf/gene.rs:139:21
[INFO] [stdout]     |
[INFO] [stdout] 139 |                     fully_matched_exons += 1;
[INFO] [stdout]     |                     ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = help: maybe it is overwritten before being read?
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `fully_matched_exons` is never read
[INFO] [stdout]    --> src/gtf/gene.rs:177:21
[INFO] [stdout]     |
[INFO] [stdout] 177 |                     fully_matched_exons += 1;
[INFO] [stdout]     |                     ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = help: maybe it is overwritten before being read?
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `found_chrs` is never read
[INFO] [stdout]    --> src/mutation_processor.rs:158:21
[INFO] [stdout]     |
[INFO] [stdout] 158 |                     found_chrs += 1;
[INFO] [stdout]     |                     ^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = help: maybe it is overwritten before being read?
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 6.79s
[INFO] running `Command { std: "docker" "inspect" "2e566aca74752225c8bc119f9c8deb1379c3994a190f7cf5f037ae8e6334c359", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2e566aca74752225c8bc119f9c8deb1379c3994a190f7cf5f037ae8e6334c359", kill_on_drop: false }`
[INFO] [stdout] 2e566aca74752225c8bc119f9c8deb1379c3994a190f7cf5f037ae8e6334c359
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:98afbf2d16093dec2546ff8915fddc74e65664aa03fc460b3712b1c2c54a33e4" "/opt/rustwide/cargo-home/bin/cargo" "+bd7d74411512a3dd3b35d2f699c51dd2557c7e7e" "test" "--frozen" "-Zbuild-dir-new-layout", kill_on_drop: false }`
[INFO] [stdout] 9c66381a2d4e8c4d2646f9b26e36422b62f0cd0d3626cd99f4a615f6af307ed9
[INFO] running `Command { std: "docker" "start" "-a" "9c66381a2d4e8c4d2646f9b26e36422b62f0cd0d3626cd99f4a615f6af307ed9", kill_on_drop: false }`
[INFO] [stderr] warning: unused import: `scdata::scdata::MatrixValueType`
[INFO] [stderr]   --> src/mutation_processor.rs:18:5
[INFO] [stderr]    |
[INFO] [stderr] 18 | use scdata::scdata::MatrixValueType;
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `min_mapping_quality`
[INFO] [stderr]    --> src/bed_data/bed_data.rs:259:73
[INFO] [stderr]     |
[INFO] [stderr] 259 |         cell_tag: &[u8;2], umi_tag: &[u8;2], add_introns:bool, only_r1: bool, min_mapping_quality:u8 ) {
[INFO] [stderr]     |                                                                               ^^^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_min_mapping_quality`
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: value assigned to `lines` is never read
[INFO] [stderr]    --> src/bed_data/bed_data.rs:445:7
[INFO] [stderr]     |
[INFO] [stderr] 445 |             lines +=1;
[INFO] [stderr]     |             ^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = help: maybe it is overwritten before being read?
[INFO] [stderr]     = note: `#[warn(unused_assignments)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: value assigned to `fully_matched_exons` is never read
[INFO] [stderr]    --> src/gtf/gene.rs:139:21
[INFO] [stderr]     |
[INFO] [stderr] 139 |                     fully_matched_exons += 1;
[INFO] [stderr]     |                     ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = help: maybe it is overwritten before being read?
[INFO] [stderr] 
[INFO] [stderr] warning: value assigned to `fully_matched_exons` is never read
[INFO] [stderr]    --> src/gtf/gene.rs:177:21
[INFO] [stderr]     |
[INFO] [stderr] 177 |                     fully_matched_exons += 1;
[INFO] [stderr]     |                     ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = help: maybe it is overwritten before being read?
[INFO] [stderr] 
[INFO] [stderr] warning: value assigned to `found_chrs` is never read
[INFO] [stderr]    --> src/mutation_processor.rs:158:21
[INFO] [stderr]     |
[INFO] [stderr] 158 |                     found_chrs += 1;
[INFO] [stderr]     |                     ^^^^^^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = help: maybe it is overwritten before being read?
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `std::collections::HashMap`
[INFO] [stderr]    --> src/bed_data/bed_data.rs:637:9
[INFO] [stderr]     |
[INFO] [stderr] 637 |     use std::collections::HashMap;
[INFO] [stderr]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `std::path::Path`
[INFO] [stderr]    --> src/bed_data/bed_data.rs:804:9
[INFO] [stderr]     |
[INFO] [stderr] 804 |     use std::path::Path;
[INFO] [stderr]     |         ^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: `bam_tide` (lib) generated 6 warnings (run `cargo fix --lib -p bam_tide` to apply 2 suggestions)
[INFO] [stderr] warning: `bam_tide` (lib test) generated 7 warnings (5 duplicates) (run `cargo fix --lib -p bam_tide --tests` to apply 2 suggestions)
[INFO] [stderr] warning: unused import: `std::process::exit`
[INFO] [stderr]  --> tests/test-bam2mut_hist.rs:2:5
[INFO] [stderr]   |
[INFO] [stderr] 2 | use std::process::exit;
[INFO] [stderr]   |     ^^^^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: value assigned to `ref_pos` is never read
[INFO] [stderr]   --> src/bin/bam2mut_hist.rs:86:21
[INFO] [stderr]    |
[INFO] [stderr] 86 |                     ref_pos += 1;
[INFO] [stderr]    |                     ^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = help: maybe it is overwritten before being read?
[INFO] [stderr]    = note: `#[warn(unused_assignments)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: value assigned to `ref_pos` is never read
[INFO] [stderr]   --> src/bin/bam2mut_hist.rs:96:21
[INFO] [stderr]    |
[INFO] [stderr] 96 |                     ref_pos += 1;
[INFO] [stderr]    |                     ^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = help: maybe it is overwritten before being read?
[INFO] [stderr] 
[INFO] [stderr] warning: `bam_tide` (test "test-bam2mut_hist") generated 1 warning (run `cargo fix --test "test-bam2mut_hist" -p bam_tide` to apply 1 suggestion)
[INFO] [stderr] warning: `bam_tide` (bin "bam2mut_hist" test) generated 2 warnings
[INFO] [stderr] warning: `bam_tide` (bin "bam2mut_hist") generated 2 warnings (2 duplicates)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.39s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/build/bam_tide/ef02c9f9da70d357/deps/bam_tide-ef02c9f9da70d357)
[INFO] [stdout] 
[INFO] [stdout] running 8 tests
[INFO] [stdout] test bed_data::bed_data::tests::test_value_flat ... ok
[INFO] [stdout] test bed_data::bed_data::tests::test_current_chr_for_id ... ok
[INFO] [stdout] test bed_data::bed_data::tests::test_genome_info_to_search_and_id_for_chr_start ... ok
[INFO] [stdout] test bed_data::bed_data::tests::test_display ... ok
[INFO] [stdout] test bed_data::bed_data::tests::test_normalize_not_and_cpm_and_bpm_and_rpkm ... ok
[INFO] [stdout] test mutation_processor::tests::test_mutation_processor_new ... ok
[INFO] [stdout] test bed_data::bed_data::tests::test_write_bigwig_creates_file ... ok
[INFO] [stdout] test mutation_processor::tests::test_handle_mutations ... FAILED
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout] 
[INFO] [stdout] ---- mutation_processor::tests::test_handle_mutations stdout ----
[INFO] [stdout] Error?: Os {
[INFO] [stdout]     code: 30,
[INFO] [stdout]     kind: ReadOnlyFilesystem,
[INFO] [stdout]     message: "Read-only file system",
[INFO] [stdout] }
[INFO] [stdout] 
[INFO] [stdout] thread 'mutation_processor::tests::test_handle_mutations' (30) panicked at src/mutation_processor.rs:456:56:
[INFO] [stdout] Failed to write sparse matrix: "Error creating the path?: Os {\n    code: 2,\n    kind: NotFound,\n    message: \"No such file or directory\",\n}"
[INFO] [stdout] stack backtrace:
[INFO] [stdout]    0:     0x643196cf4572 - std[840933623431fd06]::backtrace_rs::backtrace::libunwind::trace
[INFO] [stdout]                                at /rustc/bd7d74411512a3dd3b35d2f699c51dd2557c7e7e/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9
[INFO] [stdout]    1:     0x643196cf4572 - std[840933623431fd06]::backtrace_rs::backtrace::trace_unsynchronized::<std[840933623431fd06]::sys::backtrace::_print_fmt::{closure#1}>
[INFO] [stdout]                                at /rustc/bd7d74411512a3dd3b35d2f699c51dd2557c7e7e/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14
[INFO] [stdout]    2:     0x643196cf4572 - std[840933623431fd06]::sys::backtrace::_print_fmt
[INFO] [stdout]                                at /rustc/bd7d74411512a3dd3b35d2f699c51dd2557c7e7e/library/std/src/sys/backtrace.rs:74:9
[INFO] [stdout]    3:     0x643196cf4572 - <<std[840933623431fd06]::sys::backtrace::BacktraceLock>::print::DisplayBacktrace as core[8f93d80df273fe75]::fmt::Display>::fmt
[INFO] [stdout]                                at /rustc/bd7d74411512a3dd3b35d2f699c51dd2557c7e7e/library/std/src/sys/backtrace.rs:44:26
[INFO] [stdout]    4:     0x643196d0ad4a - <core[8f93d80df273fe75]::fmt::rt::Argument>::fmt
[INFO] [stdout]                                at /rustc/bd7d74411512a3dd3b35d2f699c51dd2557c7e7e/library/core/src/fmt/rt.rs:152:76
[INFO] [stdout]    5:     0x643196d0ad4a - core[8f93d80df273fe75]::fmt::write
[INFO] [stdout]    6:     0x643196cf96e6 - std[840933623431fd06]::io::default_write_fmt::<alloc[40b2bae28975ac47]::vec::Vec<u8>>
[INFO] [stdout]                                at /rustc/bd7d74411512a3dd3b35d2f699c51dd2557c7e7e/library/std/src/io/mod.rs:639:11
[INFO] [stdout]    7:     0x643196cf96e6 - <alloc[40b2bae28975ac47]::vec::Vec<u8> as std[840933623431fd06]::io::Write>::write_fmt
[INFO] [stdout]                                at /rustc/bd7d74411512a3dd3b35d2f699c51dd2557c7e7e/library/std/src/io/mod.rs:1994:13
[INFO] [stdout]    8:     0x643196cd098f - <std[840933623431fd06]::sys::backtrace::BacktraceLock>::print
[INFO] [stdout]                                at /rustc/bd7d74411512a3dd3b35d2f699c51dd2557c7e7e/library/std/src/sys/backtrace.rs:47:9
[INFO] [stdout]    9:     0x643196cd098f - std[840933623431fd06]::panicking::default_hook::{closure#0}
[INFO] [stdout]                                at /rustc/bd7d74411512a3dd3b35d2f699c51dd2557c7e7e/library/std/src/panicking.rs:292:27
[INFO] [stdout]   10:     0x643196ceb8e9 - std[840933623431fd06]::panicking::default_hook
[INFO] [stdout]                                at /rustc/bd7d74411512a3dd3b35d2f699c51dd2557c7e7e/library/std/src/panicking.rs:316:9
[INFO] [stdout]   11:     0x64319634223e - <alloc[40b2bae28975ac47]::boxed::Box<dyn for<'a, 'b> core[8f93d80df273fe75]::ops::function::Fn<(&'a std[840933623431fd06]::panic::PanicHookInfo<'b>,), Output = ()> + core[8f93d80df273fe75]::marker::Sync + core[8f93d80df273fe75]::marker::Send> as core[8f93d80df273fe75]::ops::function::Fn<(&std[840933623431fd06]::panic::PanicHookInfo,)>>::call
[INFO] [stdout]                                at /rustc/bd7d74411512a3dd3b35d2f699c51dd2557c7e7e/library/alloc/src/boxed.rs:2220:9
[INFO] [stdout]   12:     0x64319634223e - test[2f1252070343a163]::test_main_with_exit_callback::<test[2f1252070343a163]::test_main::{closure#0}>::{closure#0}
[INFO] [stdout]                                at /rustc/bd7d74411512a3dd3b35d2f699c51dd2557c7e7e/library/test/src/lib.rs:145:21
[INFO] [stdout]   13:     0x643196cebb52 - <alloc[40b2bae28975ac47]::boxed::Box<dyn for<'a, 'b> core[8f93d80df273fe75]::ops::function::Fn<(&'a std[840933623431fd06]::panic::PanicHookInfo<'b>,), Output = ()> + core[8f93d80df273fe75]::marker::Sync + core[8f93d80df273fe75]::marker::Send> as core[8f93d80df273fe75]::ops::function::Fn<(&std[840933623431fd06]::panic::PanicHookInfo,)>>::call
[INFO] [stdout]                                at /rustc/bd7d74411512a3dd3b35d2f699c51dd2557c7e7e/library/alloc/src/boxed.rs:2220:9
[INFO] [stdout]   14:     0x643196cebb52 - std[840933623431fd06]::panicking::panic_with_hook
[INFO] [stdout]                                at /rustc/bd7d74411512a3dd3b35d2f699c51dd2557c7e7e/library/std/src/panicking.rs:833:13
[INFO] [stdout]   15:     0x643196cd0a48 - std[840933623431fd06]::panicking::panic_handler::{closure#0}
[INFO] [stdout]                                at /rustc/bd7d74411512a3dd3b35d2f699c51dd2557c7e7e/library/std/src/panicking.rs:698:13
[INFO] [stdout]   16:     0x643196cc8159 - std[840933623431fd06]::sys::backtrace::__rust_end_short_backtrace::<std[840933623431fd06]::panicking::panic_handler::{closure#0}, !>
[INFO] [stdout]                                at /rustc/bd7d74411512a3dd3b35d2f699c51dd2557c7e7e/library/std/src/sys/backtrace.rs:182:18
[INFO] [stdout]   17:     0x643196cd189d - __rustc[5b4a0c6d8cc4a177]::rust_begin_unwind
[INFO] [stdout]                                at /rustc/bd7d74411512a3dd3b35d2f699c51dd2557c7e7e/library/std/src/panicking.rs:689:5
[INFO] [stdout]   18:     0x643196d0b50c - core[8f93d80df273fe75]::panicking::panic_fmt
[INFO] [stdout]                                at /rustc/bd7d74411512a3dd3b35d2f699c51dd2557c7e7e/library/core/src/panicking.rs:80:14
[INFO] [stdout]   19:     0x643196d0b282 - core[8f93d80df273fe75]::result::unwrap_failed
[INFO] [stdout]                                at /rustc/bd7d74411512a3dd3b35d2f699c51dd2557c7e7e/library/core/src/result.rs:1867:5
[INFO] [stdout]   20:     0x643196308e3e - <core[8f93d80df273fe75]::result::Result<alloc[40b2bae28975ac47]::string::String, alloc[40b2bae28975ac47]::string::String>>::expect
[INFO] [stdout]                                at /rustc/bd7d74411512a3dd3b35d2f699c51dd2557c7e7e/library/core/src/result.rs:1185:23
[INFO] [stdout]   21:     0x643196320945 - bam_tide[c03a49593d9bd40]::mutation_processor::tests::test_handle_mutations
[INFO] [stdout]                                at /opt/rustwide/workdir/src/mutation_processor.rs:456:56
[INFO] [stdout]   22:     0x64319631fbc7 - bam_tide[c03a49593d9bd40]::mutation_processor::tests::test_handle_mutations::{closure#0}
[INFO] [stdout]                                at /opt/rustwide/workdir/src/mutation_processor.rs:376:31
[INFO] [stdout]   23:     0x643196321fd6 - <bam_tide[c03a49593d9bd40]::mutation_processor::tests::test_handle_mutations::{closure#0} as core[8f93d80df273fe75]::ops::function::FnOnce<()>>::call_once
[INFO] [stdout]                                at /rustc/bd7d74411512a3dd3b35d2f699c51dd2557c7e7e/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   24:     0x6431963365eb - <fn() -> core[8f93d80df273fe75]::result::Result<(), alloc[40b2bae28975ac47]::string::String> as core[8f93d80df273fe75]::ops::function::FnOnce<()>>::call_once
[INFO] [stdout]                                at /rustc/bd7d74411512a3dd3b35d2f699c51dd2557c7e7e/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   25:     0x6431963365eb - test[2f1252070343a163]::__rust_begin_short_backtrace::<core[8f93d80df273fe75]::result::Result<(), alloc[40b2bae28975ac47]::string::String>, fn() -> core[8f93d80df273fe75]::result::Result<(), alloc[40b2bae28975ac47]::string::String>>
[INFO] [stdout]                                at /rustc/bd7d74411512a3dd3b35d2f699c51dd2557c7e7e/library/test/src/lib.rs:663:18
[INFO] [stdout]   26:     0x643196342e4a - test[2f1252070343a163]::run_test_in_process::{closure#0}
[INFO] [stdout]                                at /rustc/bd7d74411512a3dd3b35d2f699c51dd2557c7e7e/library/test/src/lib.rs:686:74
[INFO] [stdout]   27:     0x643196342e4a - <core[8f93d80df273fe75]::panic::unwind_safe::AssertUnwindSafe<test[2f1252070343a163]::run_test_in_process::{closure#0}> as core[8f93d80df273fe75]::ops::function::FnOnce<()>>::call_once
[INFO] [stdout]                                at /rustc/bd7d74411512a3dd3b35d2f699c51dd2557c7e7e/library/core/src/panic/unwind_safe.rs:274:9
[INFO] [stdout]   28:     0x643196342e4a - std[840933623431fd06]::panicking::catch_unwind::do_call::<core[8f93d80df273fe75]::panic::unwind_safe::AssertUnwindSafe<test[2f1252070343a163]::run_test_in_process::{closure#0}>, core[8f93d80df273fe75]::result::Result<(), alloc[40b2bae28975ac47]::string::String>>
[INFO] [stdout]                                at /rustc/bd7d74411512a3dd3b35d2f699c51dd2557c7e7e/library/std/src/panicking.rs:581:40
[INFO] [stdout]   29:     0x643196342e4a - std[840933623431fd06]::panicking::catch_unwind::<core[8f93d80df273fe75]::result::Result<(), alloc[40b2bae28975ac47]::string::String>, core[8f93d80df273fe75]::panic::unwind_safe::AssertUnwindSafe<test[2f1252070343a163]::run_test_in_process::{closure#0}>>
[INFO] [stdout]                                at /rustc/bd7d74411512a3dd3b35d2f699c51dd2557c7e7e/library/std/src/panicking.rs:544:19
[INFO] [stdout]   30:     0x643196342e4a - std[840933623431fd06]::panic::catch_unwind::<core[8f93d80df273fe75]::panic::unwind_safe::AssertUnwindSafe<test[2f1252070343a163]::run_test_in_process::{closure#0}>, core[8f93d80df273fe75]::result::Result<(), alloc[40b2bae28975ac47]::string::String>>
[INFO] [stdout]                                at /rustc/bd7d74411512a3dd3b35d2f699c51dd2557c7e7e/library/std/src/panic.rs:359:14
[INFO] [stdout]   31:     0x643196342e4a - test[2f1252070343a163]::run_test_in_process
[INFO] [stdout]                                at /rustc/bd7d74411512a3dd3b35d2f699c51dd2557c7e7e/library/test/src/lib.rs:686:27
[INFO] [stdout]   32:     0x643196342e4a - test[2f1252070343a163]::run_test::{closure#0}
[INFO] [stdout]                                at /rustc/bd7d74411512a3dd3b35d2f699c51dd2557c7e7e/library/test/src/lib.rs:607:43
[INFO] [stdout]   33:     0x64319633d314 - test[2f1252070343a163]::run_test::{closure#1}
[INFO] [stdout]                                at /rustc/bd7d74411512a3dd3b35d2f699c51dd2557c7e7e/library/test/src/lib.rs:637:41
[INFO] [stdout]   34:     0x64319633d314 - std[840933623431fd06]::sys::backtrace::__rust_begin_short_backtrace::<test[2f1252070343a163]::run_test::{closure#1}, ()>
[INFO] [stdout]                                at /rustc/bd7d74411512a3dd3b35d2f699c51dd2557c7e7e/library/std/src/sys/backtrace.rs:166:18
[INFO] [stdout]   35:     0x643196345942 - std[840933623431fd06]::thread::lifecycle::spawn_unchecked::<test[2f1252070343a163]::run_test::{closure#1}, ()>::{closure#1}::{closure#0}
[INFO] [stdout]                                at /rustc/bd7d74411512a3dd3b35d2f699c51dd2557c7e7e/library/std/src/thread/lifecycle.rs:91:13
[INFO] [stdout]   36:     0x643196345942 - <core[8f93d80df273fe75]::panic::unwind_safe::AssertUnwindSafe<std[840933623431fd06]::thread::lifecycle::spawn_unchecked<test[2f1252070343a163]::run_test::{closure#1}, ()>::{closure#1}::{closure#0}> as core[8f93d80df273fe75]::ops::function::FnOnce<()>>::call_once
[INFO] [stdout]                                at /rustc/bd7d74411512a3dd3b35d2f699c51dd2557c7e7e/library/core/src/panic/unwind_safe.rs:274:9
[INFO] [stdout]   37:     0x643196345942 - std[840933623431fd06]::panicking::catch_unwind::do_call::<core[8f93d80df273fe75]::panic::unwind_safe::AssertUnwindSafe<std[840933623431fd06]::thread::lifecycle::spawn_unchecked<test[2f1252070343a163]::run_test::{closure#1}, ()>::{closure#1}::{closure#0}>, ()>
[INFO] [stdout]                                at /rustc/bd7d74411512a3dd3b35d2f699c51dd2557c7e7e/library/std/src/panicking.rs:581:40
[INFO] [stdout]   38:     0x643196345942 - std[840933623431fd06]::panicking::catch_unwind::<(), core[8f93d80df273fe75]::panic::unwind_safe::AssertUnwindSafe<std[840933623431fd06]::thread::lifecycle::spawn_unchecked<test[2f1252070343a163]::run_test::{closure#1}, ()>::{closure#1}::{closure#0}>>
[INFO] [stdout]                                at /rustc/bd7d74411512a3dd3b35d2f699c51dd2557c7e7e/library/std/src/panicking.rs:544:19
[INFO] [stdout]   39:     0x643196345942 - std[840933623431fd06]::panic::catch_unwind::<core[8f93d80df273fe75]::panic::unwind_safe::AssertUnwindSafe<std[840933623431fd06]::thread::lifecycle::spawn_unchecked<test[2f1252070343a163]::run_test::{closure#1}, ()>::{closure#1}::{closure#0}>, ()>
[INFO] [stdout]                                at /rustc/bd7d74411512a3dd3b35d2f699c51dd2557c7e7e/library/std/src/panic.rs:359:14
[INFO] [stdout]   40:     0x643196345942 - std[840933623431fd06]::thread::lifecycle::spawn_unchecked::<test[2f1252070343a163]::run_test::{closure#1}, ()>::{closure#1}
[INFO] [stdout]                                at /rustc/bd7d74411512a3dd3b35d2f699c51dd2557c7e7e/library/std/src/thread/lifecycle.rs:89:26
[INFO] [stdout]   41:     0x643196345942 - <std[840933623431fd06]::thread::lifecycle::spawn_unchecked<test[2f1252070343a163]::run_test::{closure#1}, ()>::{closure#1} as core[8f93d80df273fe75]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0}
[INFO] [stdout]                                at /rustc/bd7d74411512a3dd3b35d2f699c51dd2557c7e7e/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   42:     0x643196cf3d3f - <alloc[40b2bae28975ac47]::boxed::Box<dyn core[8f93d80df273fe75]::ops::function::FnOnce<(), Output = ()> + core[8f93d80df273fe75]::marker::Send> as core[8f93d80df273fe75]::ops::function::FnOnce<()>>::call_once
[INFO] [stdout]                                at /rustc/bd7d74411512a3dd3b35d2f699c51dd2557c7e7e/library/alloc/src/boxed.rs:2206:9
[INFO] [stdout]   43:     0x643196cf3d3f - <std[840933623431fd06]::sys::thread::unix::Thread>::new::thread_start
[INFO] [stdout]                                at /rustc/bd7d74411512a3dd3b35d2f699c51dd2557c7e7e/library/std/src/sys/thread/unix.rs:119:17
[INFO] [stdout]   44:     0x7c7ec7f09aa4 - <unknown>
[INFO] [stdout]   45:     0x7c7ec7f96a64 - clone
[INFO] [stdout]   46:                0x0 - <unknown>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout]     mutation_processor::tests::test_handle_mutations
[INFO] [stdout] 
[INFO] [stdout] test result: FAILED. 7 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.17s
[INFO] [stdout] 
[INFO] [stderr] error: test failed, to rerun pass `--lib`
[INFO] running `Command { std: "docker" "inspect" "9c66381a2d4e8c4d2646f9b26e36422b62f0cd0d3626cd99f4a615f6af307ed9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "9c66381a2d4e8c4d2646f9b26e36422b62f0cd0d3626cd99f4a615f6af307ed9", kill_on_drop: false }`
[INFO] [stdout] 9c66381a2d4e8c4d2646f9b26e36422b62f0cd0d3626cd99f4a615f6af307ed9
