[INFO] fetching crate deepbiop-utils 0.1.16...
[INFO] testing deepbiop-utils-0.1.16 against try#bd7d74411512a3dd3b35d2f699c51dd2557c7e7e+cargoflags=-Zbuild-dir-new-layout for pr-149852-1
[INFO] extracting crate deepbiop-utils 0.1.16 into /workspace/builds/worker-3-tc2/source
[INFO] started tweaking crates.io crate deepbiop-utils 0.1.16
[INFO] finished tweaking crates.io crate deepbiop-utils 0.1.16
[INFO] tweaked toml for crates.io crate deepbiop-utils 0.1.16 written to /workspace/builds/worker-3-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate deepbiop-utils 0.1.16 on toolchain bd7d74411512a3dd3b35d2f699c51dd2557c7e7e
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+bd7d74411512a3dd3b35d2f699c51dd2557c7e7e" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate deepbiop-utils 0.1.16 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+bd7d74411512a3dd3b35d2f699c51dd2557c7e7e" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:98afbf2d16093dec2546ff8915fddc74e65664aa03fc460b3712b1c2c54a33e4" "/opt/rustwide/cargo-home/bin/cargo" "+bd7d74411512a3dd3b35d2f699c51dd2557c7e7e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 5958cf50a8491a9bfe95f982aa09c2ee52b9e5cbf8adae1f465a6b9c8977efe8
[INFO] running `Command { std: "docker" "start" "-a" "5958cf50a8491a9bfe95f982aa09c2ee52b9e5cbf8adae1f465a6b9c8977efe8", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "5958cf50a8491a9bfe95f982aa09c2ee52b9e5cbf8adae1f465a6b9c8977efe8", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5958cf50a8491a9bfe95f982aa09c2ee52b9e5cbf8adae1f465a6b9c8977efe8", kill_on_drop: false }`
[INFO] [stdout] 5958cf50a8491a9bfe95f982aa09c2ee52b9e5cbf8adae1f465a6b9c8977efe8
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:98afbf2d16093dec2546ff8915fddc74e65664aa03fc460b3712b1c2c54a33e4" "/opt/rustwide/cargo-home/bin/cargo" "+bd7d74411512a3dd3b35d2f699c51dd2557c7e7e" "build" "--frozen" "--message-format=json" "-Zbuild-dir-new-layout", kill_on_drop: false }`
[INFO] [stdout] 47bc409971ad143c45151d8933162cebf7e0f8361087dfb819fa2144811d63a4
[INFO] running `Command { std: "docker" "start" "-a" "47bc409971ad143c45151d8933162cebf7e0f8361087dfb819fa2144811d63a4", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.103
[INFO] [stderr]    Compiling target-lexicon v0.13.3
[INFO] [stderr]    Compiling zerocopy v0.8.27
[INFO] [stderr]    Compiling lexical-util v1.0.7
[INFO] [stderr]    Compiling jobserver v0.1.34
[INFO] [stderr]    Compiling getrandom v0.2.16
[INFO] [stderr]    Compiling regex-syntax v0.8.8
[INFO] [stderr]    Compiling siphasher v1.0.1
[INFO] [stderr]    Compiling arrow-schema v57.0.0
[INFO] [stderr]    Compiling ahash v0.8.12
[INFO] [stderr]    Compiling serde_core v1.0.228
[INFO] [stderr]    Compiling libm v0.2.15
[INFO] [stderr]    Compiling num-integer v0.1.46
[INFO] [stderr]    Compiling num-complex v0.4.6
[INFO] [stderr]    Compiling chrono v0.4.42
[INFO] [stderr]    Compiling lexical-write-integer v1.0.6
[INFO] [stderr]    Compiling lexical-parse-integer v1.0.6
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling cc v1.2.44
[INFO] [stderr]    Compiling num-bigint v0.4.6
[INFO] [stderr]    Compiling lexical-parse-float v1.0.6
[INFO] [stderr]    Compiling phf_shared v0.11.3
[INFO] [stderr]    Compiling zlib-rs v0.5.2
[INFO] [stderr]    Compiling lexical-write-float v1.0.6
[INFO] [stderr]    Compiling simd-adler32 v0.3.7
[INFO] [stderr]    Compiling itertools v0.11.0
[INFO] [stderr]    Compiling miniz_oxide v0.8.9
[INFO] [stderr]    Compiling malachite-nz v0.4.22
[INFO] [stderr]    Compiling pyo3-build-config v0.27.1
[INFO] [stderr]    Compiling quote v1.0.41
[INFO] [stderr]    Compiling crunchy v0.2.4
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling lexical-core v1.0.6
[INFO] [stderr]    Compiling getopts v0.2.24
[INFO] [stderr]    Compiling log v0.4.28
[INFO] [stderr]    Compiling syn v2.0.108
[INFO] [stderr]    Compiling tiny-keccak v2.0.2
[INFO] [stderr]    Compiling unic-char-range v0.9.0
[INFO] [stderr]    Compiling unic-common v0.9.0
[INFO] [stderr]    Compiling unic-char-property v0.9.0
[INFO] [stderr]    Compiling unic-ucd-version v0.9.0
[INFO] [stderr]    Compiling flatbuffers v25.9.23
[INFO] [stderr]    Compiling atoi v2.0.0
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
[INFO] [stderr]    Compiling rustpython-parser-vendored v0.4.0
[INFO] [stderr]    Compiling phf v0.11.3
[INFO] [stderr]    Compiling regex-automata v0.4.13
[INFO] [stderr]    Compiling static_assertions v1.1.0
[INFO] [stderr]    Compiling zstd-sys v2.0.16+zstd.1.5.7
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling unic-ucd-ident v0.9.0
[INFO] [stderr]    Compiling unic-emoji-char v0.9.0
[INFO] [stderr]    Compiling csv-core v0.1.13
[INFO] [stderr]    Compiling unindent v0.2.4
[INFO] [stderr]    Compiling winnow v0.7.13
[INFO] [stderr]    Compiling lalrpop-util v0.20.2
[INFO] [stderr]    Compiling indoc v2.0.7
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]    Compiling snap v1.1.1
[INFO] [stderr]    Compiling simdutf8 v0.1.5
[INFO] [stderr]    Compiling rustix v1.1.2
[INFO] [stderr]    Compiling ndarray v0.16.1
[INFO] [stderr]    Compiling ppv-lite86 v0.2.21
[INFO] [stderr]    Compiling pyo3-macros-backend v0.27.1
[INFO] [stderr]    Compiling pyo3-ffi v0.27.1
[INFO] [stderr]    Compiling pyo3 v0.27.1
[INFO] [stderr]    Compiling numpy v0.27.0
[INFO] [stderr]    Compiling hashbrown v0.14.5
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling csv v1.4.0
[INFO] [stderr]    Compiling toml_datetime v0.7.3
[INFO] [stderr]    Compiling serde_spanned v1.0.3
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling serde_json v1.0.145
[INFO] [stderr]    Compiling brotli-decompressor v5.0.0
[INFO] [stderr]    Compiling ordered-float v2.10.1
[INFO] [stderr]    Compiling integer-encoding v3.0.4
[INFO] [stderr]    Compiling toml_writer v1.0.4
[INFO] [stderr]    Compiling rustc-hash v2.1.1
[INFO] [stderr]    Compiling libz-rs-sys v0.5.2
[INFO] [stderr]    Compiling twox-hash v2.1.2
[INFO] [stderr]    Compiling flate2 v1.1.5
[INFO] [stderr]    Compiling malachite-base v0.4.22
[INFO] [stderr]    Compiling lz4_flex v0.11.5
[INFO] [stderr]    Compiling bzip2 v0.4.4
[INFO] [stderr]    Compiling xz2 v0.1.7
[INFO] [stderr]    Compiling phf_generator v0.11.3
[INFO] [stderr]    Compiling toml_parser v1.0.4
[INFO] [stderr]    Compiling thrift v0.17.0
[INFO] [stderr]    Compiling phf_codegen v0.11.3
[INFO] [stderr]    Compiling unicode_names2_generator v1.3.0
[INFO] [stderr]    Compiling noodles-bgzf v0.43.0
[INFO] [stderr]    Compiling rustpython-parser v0.4.0
[INFO] [stderr]    Compiling brotli v8.0.2
[INFO] [stderr]    Compiling bstr v1.12.1
[INFO] [stderr]    Compiling regex v1.12.2
[INFO] [stderr]    Compiling toml v0.9.8
[INFO] [stderr]    Compiling ordered-float v5.1.0
[INFO] [stderr]    Compiling buffer-redux v1.0.2
[INFO] [stderr]    Compiling darling_core v0.20.11
[INFO] [stderr]    Compiling inventory v0.3.21
[INFO] [stderr]    Compiling smawk v0.3.2
[INFO] [stderr]    Compiling bytecount v0.6.9
[INFO] [stderr]    Compiling unicode-linebreak v0.1.5
[INFO] [stderr]    Compiling unicode_names2 v1.3.0
[INFO] [stderr]    Compiling tempfile v3.23.0
[INFO] [stderr]    Compiling textwrap v0.16.2
[INFO] [stderr]    Compiling needletail v0.5.1
[INFO] [stderr]    Compiling lexical v7.0.5
[INFO] [stderr]    Compiling colored v3.0.0
[INFO] [stderr]    Compiling noodles-core v0.18.0
[INFO] [stderr]    Compiling noodles-csi v0.51.0
[INFO] [stderr]    Compiling noodles-fasta v0.56.0
[INFO] [stderr]    Compiling noodles-fastq v0.21.0
[INFO] [stderr]    Compiling noodles-sam v0.79.0
[INFO] [stderr]    Compiling zerocopy-derive v0.8.27
[INFO] [stderr]    Compiling derive_more-impl v1.0.0
[INFO] [stderr]    Compiling is-macro v0.3.7
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling rustpython-parser-core v0.4.0
[INFO] [stderr]    Compiling noodles-bam v0.83.0
[INFO] [stderr]    Compiling darling_macro v0.20.11
[INFO] [stderr]    Compiling derive_more v1.0.0
[INFO] [stderr]    Compiling noodles v0.101.0
[INFO] [stderr]    Compiling darling v0.20.11
[INFO] [stderr]    Compiling derive_builder_core v0.20.2
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]    Compiling pyo3-macros v0.27.1
[INFO] [stderr]    Compiling zstd-safe v7.2.4
[INFO] [stderr]    Compiling derive_builder_macro v0.20.2
[INFO] [stderr]    Compiling zstd v0.13.3
[INFO] [stderr]    Compiling derive_builder v0.20.2
[INFO] [stderr]    Compiling half v2.7.1
[INFO] [stderr]    Compiling arrow-buffer v57.0.0
[INFO] [stderr]    Compiling arrow-data v57.0.0
[INFO] [stderr]    Compiling arrow-array v57.0.0
[INFO] [stderr]    Compiling arrow-select v57.0.0
[INFO] [stderr]    Compiling arrow-row v57.0.0
[INFO] [stderr]    Compiling arrow-arith v57.0.0
[INFO] [stderr]    Compiling arrow-cast v57.0.0
[INFO] [stderr]    Compiling arrow-ipc v57.0.0
[INFO] [stderr]    Compiling arrow-string v57.0.0
[INFO] [stderr]    Compiling arrow-ord v57.0.0
[INFO] [stderr]    Compiling malachite-q v0.4.22
[INFO] [stderr]    Compiling malachite v0.4.22
[INFO] [stderr]    Compiling malachite-bigint v0.2.3
[INFO] [stderr]    Compiling rustpython-ast v0.4.0
[INFO] [stderr]    Compiling arrow-json v57.0.0
[INFO] [stderr]    Compiling arrow-csv v57.0.0
[INFO] [stderr]    Compiling parquet v57.0.0
[INFO] [stderr]    Compiling arrow v57.0.0
[INFO] [stderr]    Compiling pyo3-stub-gen-derive v0.17.0
[INFO] [stderr]    Compiling pyo3-stub-gen v0.17.0
[INFO] [stderr]    Compiling deepbiop-utils v0.1.16 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 32s
[INFO] running `Command { std: "docker" "inspect" "47bc409971ad143c45151d8933162cebf7e0f8361087dfb819fa2144811d63a4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "47bc409971ad143c45151d8933162cebf7e0f8361087dfb819fa2144811d63a4", kill_on_drop: false }`
[INFO] [stdout] 47bc409971ad143c45151d8933162cebf7e0f8361087dfb819fa2144811d63a4
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:98afbf2d16093dec2546ff8915fddc74e65664aa03fc460b3712b1c2c54a33e4" "/opt/rustwide/cargo-home/bin/cargo" "+bd7d74411512a3dd3b35d2f699c51dd2557c7e7e" "test" "--frozen" "--no-run" "--message-format=json" "-Zbuild-dir-new-layout", kill_on_drop: false }`
[INFO] [stdout] 44a7ef1044ead9c81fd5bfd56502c27f8e121cc74d718f4158f111dc2f2d0c7d
[INFO] running `Command { std: "docker" "start" "-a" "44a7ef1044ead9c81fd5bfd56502c27f8e121cc74d718f4158f111dc2f2d0c7d", kill_on_drop: false }`
[INFO] [stderr]    Compiling deepbiop-utils v0.1.16 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 4.88s
[INFO] running `Command { std: "docker" "inspect" "44a7ef1044ead9c81fd5bfd56502c27f8e121cc74d718f4158f111dc2f2d0c7d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "44a7ef1044ead9c81fd5bfd56502c27f8e121cc74d718f4158f111dc2f2d0c7d", kill_on_drop: false }`
[INFO] [stdout] 44a7ef1044ead9c81fd5bfd56502c27f8e121cc74d718f4158f111dc2f2d0c7d
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:98afbf2d16093dec2546ff8915fddc74e65664aa03fc460b3712b1c2c54a33e4" "/opt/rustwide/cargo-home/bin/cargo" "+bd7d74411512a3dd3b35d2f699c51dd2557c7e7e" "test" "--frozen" "-Zbuild-dir-new-layout", kill_on_drop: false }`
[INFO] [stdout] 0b3e509961a8833d94adfc95276bb44e86c8dbee30de431e8ab60e03eef89e6b
[INFO] running `Command { std: "docker" "start" "-a" "0b3e509961a8833d94adfc95276bb44e86c8dbee30de431e8ab60e03eef89e6b", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.36s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/build/deepbiop-utils/f4733b29e60c5467/deps/deepbiop_utils-f4733b29e60c5467)
[INFO] [stdout] 
[INFO] [stdout] running 18 tests
[INFO] [stdout] test interval::genomics::tests::test_segment ... ok
[INFO] [stdout] test interval::traits::tests::test_overlap_for_range ... ok
[INFO] [stdout] test interval::op::tests::test_generate_unmaped_intervals ... ok
[INFO] [stdout] test blat::tests::test_parse_psl ... ok
[INFO] [stdout] test io::tests::test_real_example ... ok
[INFO] [stdout] test io::tests::test_sequence_file_type ... ok
[INFO] [stdout] test sv::tests::test_structural_variant_builder ... ok
[INFO] [stdout] test sv::tests::test_structural_variant_from_str ... ok
[INFO] [stdout] test sv::tests::test_structural_variant_from_str_invalid_format ... ok
[INFO] [stdout] test strategy::tests::test_majority_voting_empty_labels ... ok
[INFO] [stdout] test tests::test_highlight ... ok
[INFO] [stdout] test strategy::tests::test_majority_voting_small_window ... ok
[INFO] [stdout] test strategy::tests::test_majority_voting ... ok
[INFO] [stdout] test io::tests::test_is_compressed ... ok
[INFO] [stdout] test interval::op::tests::test_remove_intervals_and_keep_left ... ok
[INFO] [stdout] test io::tests::test_check_file_type ... ok
[INFO] [stdout] test sv::tests::test_structural_variant_type_from_str ... ok
[INFO] [stdout] test strategy::tests::test_majority_voting2 ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 18 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests deepbiop_utils
[INFO] [stdout] 
[INFO] [stdout] running 5 tests
[INFO] [stdout] test src/io.rs - io::is_compressed (line 139) - compile ... ok
[INFO] [stdout] test src/io.rs - io::check_compressed_type (line 68) - compile ... ok
[INFO] [stdout] test src/io.rs - io::check_sequence_file_type (line 198) - compile ... ok
[INFO] [stdout] test src/interval/genomics.rs - interval::genomics::GenomicInterval::from_str (line 31) ... ok
[INFO] [stdout] test src/sv.rs - sv::StructuralVariant::from_str (line 77) ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 5 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 2.72s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "0b3e509961a8833d94adfc95276bb44e86c8dbee30de431e8ab60e03eef89e6b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0b3e509961a8833d94adfc95276bb44e86c8dbee30de431e8ab60e03eef89e6b", kill_on_drop: false }`
[INFO] [stdout] 0b3e509961a8833d94adfc95276bb44e86c8dbee30de431e8ab60e03eef89e6b
