[INFO] cloning repository https://github.com/lgi-onehealth/phcue-ck
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/lgi-onehealth/phcue-ck" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Flgi-onehealth%2Fphcue-ck", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Flgi-onehealth%2Fphcue-ck'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 241b2c798684566bd0f7f61eb195851a29bdeff9
[INFO] testing lgi-onehealth/phcue-ck against try#bd7d74411512a3dd3b35d2f699c51dd2557c7e7e+cargoflags=-Zbuild-dir-new-layout for pr-149852-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Flgi-onehealth%2Fphcue-ck" "/workspace/builds/worker-5-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/lgi-onehealth/phcue-ck
[INFO] finished tweaking git repo https://github.com/lgi-onehealth/phcue-ck
[INFO] tweaked toml for git repo https://github.com/lgi-onehealth/phcue-ck written to /workspace/builds/worker-5-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/lgi-onehealth/phcue-ck on toolchain bd7d74411512a3dd3b35d2f699c51dd2557c7e7e
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+bd7d74411512a3dd3b35d2f699c51dd2557c7e7e" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/lgi-onehealth/phcue-ck already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+bd7d74411512a3dd3b35d2f699c51dd2557c7e7e" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:aa71247004a7fa38d13ec170f48f06cdedf5bc50b2a8645e56ed7e992e6fa513" "/opt/rustwide/cargo-home/bin/cargo" "+bd7d74411512a3dd3b35d2f699c51dd2557c7e7e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 11fb7fbe375003637970b5317a5172795824c7823bf6e54103b59a5e0db8a6eb
[INFO] running `Command { std: "docker" "start" "-a" "11fb7fbe375003637970b5317a5172795824c7823bf6e54103b59a5e0db8a6eb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "11fb7fbe375003637970b5317a5172795824c7823bf6e54103b59a5e0db8a6eb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "11fb7fbe375003637970b5317a5172795824c7823bf6e54103b59a5e0db8a6eb", kill_on_drop: false }`
[INFO] [stdout] 11fb7fbe375003637970b5317a5172795824c7823bf6e54103b59a5e0db8a6eb
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:aa71247004a7fa38d13ec170f48f06cdedf5bc50b2a8645e56ed7e992e6fa513" "/opt/rustwide/cargo-home/bin/cargo" "+bd7d74411512a3dd3b35d2f699c51dd2557c7e7e" "build" "--frozen" "--message-format=json" "-Zbuild-dir-new-layout", kill_on_drop: false }`
[INFO] [stdout] ce37a1f3e7aebc778a926c29188d27114735c77e51d99eefe6e71595d3b99171
[INFO] running `Command { std: "docker" "start" "-a" "ce37a1f3e7aebc778a926c29188d27114735c77e51d99eefe6e71595d3b99171", kill_on_drop: false }`
[INFO] [stderr]    Compiling autocfg v1.1.0
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[INFO] [stderr]    Compiling num_cpus v1.13.1
[INFO] [stderr]    Compiling socket2 v0.4.4
[INFO] [stderr]    Compiling signal-hook-registry v1.4.0
[INFO] [stderr]    Compiling parking_lot v0.12.1
[INFO] [stderr]    Compiling tracing v0.1.36
[INFO] [stderr]    Compiling clap_lex v0.2.4
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling aho-corasick v0.7.18
[INFO] [stderr]    Compiling openssl-sys v0.9.75
[INFO] [stderr]    Compiling mime v0.3.16
[INFO] [stderr]    Compiling strsim v0.10.0
[INFO] [stderr]    Compiling regex-syntax v0.6.27
[INFO] [stderr]    Compiling itoa v0.4.8
[INFO] [stderr]    Compiling http-body v0.4.5
[INFO] [stderr]    Compiling ipnet v2.5.0
[INFO] [stderr]    Compiling base64 v0.13.0
[INFO] [stderr]    Compiling termcolor v1.1.3
[INFO] [stderr]    Compiling textwrap v0.15.0
[INFO] [stderr]    Compiling unicode-normalization v0.1.21
[INFO] [stderr]    Compiling idna v0.2.3
[INFO] [stderr]    Compiling url v2.2.2
[INFO] [stderr]    Compiling regex v1.6.0
[INFO] [stderr]    Compiling futures-macro v0.3.21
[INFO] [stderr]    Compiling tokio-macros v1.8.0
[INFO] [stderr]    Compiling openssl-macros v0.1.0
[INFO] [stderr]    Compiling clap_derive v3.2.15
[INFO] [stderr]    Compiling clap v3.2.16
[INFO] [stderr]    Compiling futures-executor v0.3.21
[INFO] [stderr]    Compiling futures v0.3.21
[INFO] [stderr]    Compiling tokio-util v0.7.3
[INFO] [stderr]    Compiling bstr v0.2.17
[INFO] [stderr]    Compiling h2 v0.3.13
[INFO] [stderr]    Compiling serde_urlencoded v0.7.1
[INFO] [stderr]    Compiling csv v1.1.6
[INFO] [stderr]    Compiling hyper v0.14.20
[INFO] [stderr]    Compiling tokio-native-tls v0.3.0
[INFO] [stderr]    Compiling hyper-tls v0.5.0
[INFO] [stderr]    Compiling reqwest v0.11.11
[INFO] [stderr]    Compiling phcue-ck v0.2.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 43s
[INFO] running `Command { std: "docker" "inspect" "ce37a1f3e7aebc778a926c29188d27114735c77e51d99eefe6e71595d3b99171", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ce37a1f3e7aebc778a926c29188d27114735c77e51d99eefe6e71595d3b99171", kill_on_drop: false }`
[INFO] [stdout] ce37a1f3e7aebc778a926c29188d27114735c77e51d99eefe6e71595d3b99171
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:aa71247004a7fa38d13ec170f48f06cdedf5bc50b2a8645e56ed7e992e6fa513" "/opt/rustwide/cargo-home/bin/cargo" "+bd7d74411512a3dd3b35d2f699c51dd2557c7e7e" "test" "--frozen" "--no-run" "--message-format=json" "-Zbuild-dir-new-layout", kill_on_drop: false }`
[INFO] [stdout] 6ebbf1ea039fa3801f2ee00862b6aff5503f77f53db40dcbc4c1cae5853cc718
[INFO] running `Command { std: "docker" "start" "-a" "6ebbf1ea039fa3801f2ee00862b6aff5503f77f53db40dcbc4c1cae5853cc718", kill_on_drop: false }`
[INFO] [stderr]    Compiling memchr v2.5.0
[INFO] [stderr]    Compiling crossbeam-utils v0.8.11
[INFO] [stderr]    Compiling memoffset v0.6.5
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.10
[INFO] [stderr]    Compiling rayon-core v1.9.3
[INFO] [stderr]    Compiling either v1.7.0
[INFO] [stderr]    Compiling rayon v1.5.3
[INFO] [stderr]    Compiling fastrand v1.8.0
[INFO] [stderr]    Compiling concolor-query v0.0.5
[INFO] [stderr]    Compiling remove_dir_all v0.5.3
[INFO] [stderr]    Compiling filetime v0.2.17
[INFO] [stderr]    Compiling wait-timeout v0.2.0
[INFO] [stderr]    Compiling os_pipe v1.0.1
[INFO] [stderr]    Compiling snapbox-macros v0.3.0
[INFO] [stderr]    Compiling normalize-line-endings v0.3.0
[INFO] [stderr]    Compiling humantime v2.1.0
[INFO] [stderr]    Compiling dunce v1.0.2
[INFO] [stderr]    Compiling similar v2.2.0
[INFO] [stderr]    Compiling yansi v0.5.1
[INFO] [stderr]    Compiling shlex v1.1.0
[INFO] [stderr]    Compiling itertools v0.10.3
[INFO] [stderr]    Compiling concolor v0.0.8
[INFO] [stderr]    Compiling glob v0.3.0
[INFO] [stderr]    Compiling humantime-serde v1.1.1
[INFO] [stderr]    Compiling tempfile v3.3.0
[INFO] [stderr]    Compiling crossbeam-channel v0.5.6
[INFO] [stderr]    Compiling tokio v1.20.1
[INFO] [stderr]    Compiling futures-util v0.3.21
[INFO] [stderr]    Compiling bstr v0.2.17
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling aho-corasick v0.7.18
[INFO] [stderr]    Compiling content_inspector v0.2.4
[INFO] [stderr]    Compiling combine v4.6.4
[INFO] [stderr]    Compiling crossbeam-deque v0.8.2
[INFO] [stderr]    Compiling snapbox v0.3.1
[INFO] [stderr]    Compiling regex v1.6.0
[INFO] [stderr]    Compiling csv v1.1.6
[INFO] [stderr]    Compiling futures-executor v0.3.21
[INFO] [stderr]    Compiling futures v0.3.21
[INFO] [stderr]    Compiling tokio-util v0.7.3
[INFO] [stderr]    Compiling tokio-native-tls v0.3.0
[INFO] [stderr]    Compiling h2 v0.3.13
[INFO] [stderr]    Compiling toml_edit v0.14.4
[INFO] [stderr]    Compiling hyper v0.14.20
[INFO] [stderr]    Compiling hyper-tls v0.5.0
[INFO] [stderr]    Compiling reqwest v0.11.11
[INFO] [stderr]    Compiling phcue-ck v0.2.0 (/opt/rustwide/workdir)
[INFO] [stderr]    Compiling trycmd v0.13.5
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 51.01s
[INFO] running `Command { std: "docker" "inspect" "6ebbf1ea039fa3801f2ee00862b6aff5503f77f53db40dcbc4c1cae5853cc718", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6ebbf1ea039fa3801f2ee00862b6aff5503f77f53db40dcbc4c1cae5853cc718", kill_on_drop: false }`
[INFO] [stdout] 6ebbf1ea039fa3801f2ee00862b6aff5503f77f53db40dcbc4c1cae5853cc718
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:aa71247004a7fa38d13ec170f48f06cdedf5bc50b2a8645e56ed7e992e6fa513" "/opt/rustwide/cargo-home/bin/cargo" "+bd7d74411512a3dd3b35d2f699c51dd2557c7e7e" "test" "--frozen" "-Zbuild-dir-new-layout", kill_on_drop: false }`
[INFO] [stdout] 7c92c5a52aa4fe3b5ae67c3cdc7c572b825d5d7abcd174d593b9bff6755f502c
[INFO] running `Command { std: "docker" "start" "-a" "7c92c5a52aa4fe3b5ae67c3cdc7c572b825d5d7abcd174d593b9bff6755f502c", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.31s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/build/phcue-ck/c9f0597041550c5f/deps/phcue_ck-c9f0597041550c5f)
[INFO] [stdout] 
[INFO] [stdout] running 11 tests
[INFO] [stdout] test tests::test_check_num_requests_valid ... ok
[INFO] [stdout] test tests::test_print_csv ... ok
[INFO] [stdout] test tests::test_check_num_requests_invalid_less_than_1 ... ok
[INFO] [stdout] test tests::test_check_num_requests_invalid_greater_than_10 ... ok
[INFO] [stdout] test tests::test_print_csv_long ... ok
[INFO] [stdout] test tests::test_print_csv_wide ... ok
[INFO] [stdout] test tests::test_removal_single_reads ... ok
[INFO] [stdout] test tests::test_validate_drr_accession ... ok
[INFO] [stdout] test tests::test_validate_invalid_accession ... ok
[INFO] [stdout] test tests::test_validate_err_accession ... ok
[INFO] [stdout] test tests::test_validate_srr_accession ... ok
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/build/phcue-ck/e357b33315fb1c78/deps/phcue_ck-e357b33315fb1c78)
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 11 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/cli_tests.rs (/opt/rustwide/target/debug/build/phcue-ck/1a219accbb8a5eee/deps/cli_tests-1a219accbb8a5eee)
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stderr] Testing tests/cmd/remove_single_end_accession.trycmd:2 ... ignored
[INFO] [stdout] test cli_tests ... ok
[INFO] [stderr] Testing tests/cmd/multiple_accessions.trycmd:2 ... ignored
[INFO] [stdout] 
[INFO] [stderr] Testing tests/cmd/file_accessions.trycmd:2 ... ignored
[INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stderr] Testing tests/cmd/keep_single_end_accession.trycmd:2 ... ignored
[INFO] [stdout] 
[INFO] [stderr] Testing tests/cmd/one_accession.trycmd:2 ... ignored
[INFO] [stderr]    Doc-tests phcue_ck
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "7c92c5a52aa4fe3b5ae67c3cdc7c572b825d5d7abcd174d593b9bff6755f502c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7c92c5a52aa4fe3b5ae67c3cdc7c572b825d5d7abcd174d593b9bff6755f502c", kill_on_drop: false }`
[INFO] [stdout] 7c92c5a52aa4fe3b5ae67c3cdc7c572b825d5d7abcd174d593b9bff6755f502c
