[INFO] cloning repository https://github.com/nextgenusfs/annorefine
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/nextgenusfs/annorefine" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnextgenusfs%2Fannorefine", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnextgenusfs%2Fannorefine'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 932b4988ba8cfcc623c88563fffb35de8943dfcd
[INFO] checking nextgenusfs/annorefine against master#da2544bfbe84df7b24d83c029c74299ebf6112c6 for pr-149681
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnextgenusfs%2Fannorefine" "/workspace/builds/worker-0-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/nextgenusfs/annorefine
[INFO] finished tweaking git repo https://github.com/nextgenusfs/annorefine
[INFO] tweaked toml for git repo https://github.com/nextgenusfs/annorefine written to /workspace/builds/worker-0-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/nextgenusfs/annorefine on toolchain da2544bfbe84df7b24d83c029c74299ebf6112c6
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+da2544bfbe84df7b24d83c029c74299ebf6112c6" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/nextgenusfs/annorefine already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+da2544bfbe84df7b24d83c029c74299ebf6112c6" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded derive-new v0.6.0
[INFO] [stderr]   Downloaded pyo3-macros v0.22.6
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded windows-core v0.62.0
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded simba v0.9.1
[INFO] [stderr]   Downloaded pyo3-ffi v0.22.6
[INFO] [stderr]   Downloaded rust-htslib v0.50.0
[INFO] [stderr]   Downloaded jiff-static v0.2.15
[INFO] [stderr]   Downloaded pyo3-macros-backend v0.22.6
[INFO] [stderr]   Downloaded statrs v0.18.0
[INFO] [stderr]   Downloaded pyo3-build-config v0.22.6
[INFO] [stderr]   Downloaded bio v2.3.0
[INFO] [stderr]   Downloaded ndarray v0.16.1
[INFO] [stderr]   Downloaded pyo3 v0.22.6
[INFO] [stderr]   Downloaded bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]   Downloaded jiff v0.2.15
[INFO] [stderr]   Downloaded lzma-sys v0.1.20
[INFO] [stderr]   Downloaded libz-sys v1.1.22
[INFO] [stderr]   Downloaded curl-sys v0.4.83+curl-8.15.0
[INFO] [stderr]   Downloaded hts-sys v2.2.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:845e597a41426bbf2703be69acdb67d10b6de511142d05cba7bbe119c898b2c7" "/opt/rustwide/cargo-home/bin/cargo" "+da2544bfbe84df7b24d83c029c74299ebf6112c6" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 1d02413948d15a9f34905bb2d21e35cd22c299ef01da0327c3b14d9daba18401
[INFO] running `Command { std: "docker" "start" "-a" "1d02413948d15a9f34905bb2d21e35cd22c299ef01da0327c3b14d9daba18401", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "1d02413948d15a9f34905bb2d21e35cd22c299ef01da0327c3b14d9daba18401", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "1d02413948d15a9f34905bb2d21e35cd22c299ef01da0327c3b14d9daba18401", kill_on_drop: false }`
[INFO] [stdout] 1d02413948d15a9f34905bb2d21e35cd22c299ef01da0327c3b14d9daba18401
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:845e597a41426bbf2703be69acdb67d10b6de511142d05cba7bbe119c898b2c7" "/opt/rustwide/cargo-home/bin/cargo" "+da2544bfbe84df7b24d83c029c74299ebf6112c6" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] d697d590d2c52bcfa8ca61e0f9b692eb320599c2c9443ad50ab737e3920b1f17
[INFO] running `Command { std: "docker" "start" "-a" "d697d590d2c52bcfa8ca61e0f9b692eb320599c2c9443ad50ab737e3920b1f17", kill_on_drop: false }`
[INFO] [stderr]    Compiling serde_core v1.0.225
[INFO] [stderr]    Compiling serde v1.0.225
[INFO] [stderr]    Compiling glob v0.3.3
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling memchr v2.7.5
[INFO] [stderr]    Compiling regex-syntax v0.8.6
[INFO] [stderr]    Compiling libc v0.2.175
[INFO] [stderr]    Compiling cfg-if v1.0.3
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
[INFO] [stderr]     Checking getrandom v0.2.16
[INFO] [stderr]    Compiling either v1.15.0
[INFO] [stderr]    Compiling serde_derive v1.0.225
[INFO] [stderr]    Compiling crossbeam-utils v0.8.21
[INFO] [stderr]     Checking bytemuck v1.23.2
[INFO] [stderr]    Compiling bindgen v0.69.5
[INFO] [stderr]    Compiling libloading v0.8.8
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]    Compiling itertools v0.12.1
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]     Checking safe_arch v0.7.4
[INFO] [stderr]    Compiling bitflags v2.9.4
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling lazycell v1.3.0
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]     Checking icu_normalizer v2.0.0
[INFO] [stderr]    Compiling thiserror v2.0.16
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]     Checking anstream v0.6.20
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling thiserror-impl v2.0.16
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]     Checking crossbeam-epoch v0.9.18
[INFO] [stderr]     Checking wide v0.7.33
[INFO] [stderr]     Checking idna_adapter v1.2.1
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]    Compiling jobserver v0.1.34
[INFO] [stderr]    Compiling rayon-core v1.13.0
[INFO] [stderr]     Checking percent-encoding v2.3.2
[INFO] [stderr]    Compiling anyhow v1.0.99
[INFO] [stderr]     Checking indexmap v2.11.4
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]     Checking form_urlencoded v1.2.2
[INFO] [stderr]     Checking idna v1.1.0
[INFO] [stderr]     Checking crossbeam-deque v0.8.6
[INFO] [stderr]     Checking regex-automata v0.4.10
[INFO] [stderr]    Compiling cc v1.2.37
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]     Checking csv-core v0.1.12
[INFO] [stderr]     Checking fixedbitset v0.5.7
[INFO] [stderr]     Checking clap_lex v0.7.5
[INFO] [stderr]     Checking bit-vec v0.8.0
[INFO] [stderr]     Checking clap_builder v4.5.47
[INFO] [stderr]     Checking bit-set v0.8.0
[INFO] [stderr]     Checking ndarray v0.16.1
[INFO] [stderr]     Checking petgraph v0.8.2
[INFO] [stderr]     Checking enum-map v2.7.3
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking ordered-float v5.0.0
[INFO] [stderr]    Compiling clap_derive v4.5.47
[INFO] [stderr]    Compiling derive-new v0.7.0
[INFO] [stderr]    Compiling cmake v0.1.54
[INFO] [stderr]    Compiling openssl-src v300.5.2+3.5.2
[INFO] [stderr]     Checking simba v0.9.1
[INFO] [stderr]     Checking strum v0.26.3
[INFO] [stderr]     Checking regex v1.11.2
[INFO] [stderr]     Checking editdistancek v1.0.2
[INFO] [stderr]     Checking jiff v0.2.15
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]     Checking rayon v1.11.0
[INFO] [stderr]     Checking colored v3.0.0
[INFO] [stderr]     Checking rustix v1.1.2
[INFO] [stderr]     Checking getrandom v0.3.3
[INFO] [stderr]     Checking bio-types v1.0.4
[INFO] [stderr]     Checking env_filter v0.1.3
[INFO] [stderr]     Checking once_cell v1.21.3
[INFO] [stderr]    Compiling openssl-sys v0.9.109
[INFO] [stderr]    Compiling libz-sys v1.1.22
[INFO] [stderr] error: could not compile `clang-sys` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/da2544bfbe84df7b24d83c029c74299ebf6112c6/bin/rustc --crate-name clang_sys --edition=2021 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/clang-sys-1.8.1/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no --cfg 'feature="clang_3_5"' --cfg 'feature="clang_3_6"' --cfg 'feature="clang_3_7"' --cfg 'feature="clang_3_8"' --cfg 'feature="clang_3_9"' --cfg 'feature="clang_4_0"' --cfg 'feature="clang_5_0"' --cfg 'feature="clang_6_0"' --cfg 'feature="libloading"' --cfg 'feature="runtime"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("clang_10_0", "clang_11_0", "clang_12_0", "clang_13_0", "clang_14_0", "clang_15_0", "clang_16_0", "clang_17_0", "clang_18_0", "clang_3_5", "clang_3_6", "clang_3_7", "clang_3_8", "clang_3_9", "clang_4_0", "clang_5_0", "clang_6_0", "clang_7_0", "clang_8_0", "clang_9_0", "libcpp", "libloading", "runtime", "static"))' -C metadata=bb2a881ca1bf3c84 -C extra-filename=-b4ad8c088faa1e9a --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern glob=/opt/rustwide/target/debug/deps/libglob-2a70d14a7a68e908.rmeta --extern libc=/opt/rustwide/target/debug/deps/liblibc-e8a0deb37a9d72c4.rmeta --extern libloading=/opt/rustwide/target/debug/deps/liblibloading-ffe960db4aef1a25.rmeta --cap-lints allow --cap-lints=forbid` (signal: 9, SIGKILL: kill)
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] running `Command { std: "docker" "inspect" "d697d590d2c52bcfa8ca61e0f9b692eb320599c2c9443ad50ab737e3920b1f17", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d697d590d2c52bcfa8ca61e0f9b692eb320599c2c9443ad50ab737e3920b1f17", kill_on_drop: false }`
[INFO] [stdout] d697d590d2c52bcfa8ca61e0f9b692eb320599c2c9443ad50ab737e3920b1f17