[INFO] cloning repository https://github.com/SebastianDall/methylation_utils [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/SebastianDall/methylation_utils" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FSebastianDall%2Fmethylation_utils", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FSebastianDall%2Fmethylation_utils'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 02201486c4fc9bbf5eeb0b7e061f4cb9512efc8f [INFO] checking SebastianDall/methylation_utils against master#8202d110516c6bd87cee375e9a9b774db499015c for pr-149596 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FSebastianDall%2Fmethylation_utils" "/workspace/builds/worker-6-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc1/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/SebastianDall/methylation_utils [INFO] finished tweaking git repo https://github.com/SebastianDall/methylation_utils [INFO] tweaked toml for git repo https://github.com/SebastianDall/methylation_utils written to /workspace/builds/worker-6-tc1/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/SebastianDall/methylation_utils on toolchain 8202d110516c6bd87cee375e9a9b774db499015c [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8202d110516c6bd87cee375e9a9b774db499015c" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/SebastianDall/methylation_utils already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8202d110516c6bd87cee375e9a9b774db499015c" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded buffer-redux v1.0.2 [INFO] [stderr] Downloaded anstream v0.6.17 [INFO] [stderr] Downloaded noodles-core v0.18.0 [INFO] [stderr] Downloaded seq_io v0.3.4 [INFO] [stderr] Downloaded lexical-core v1.0.6 [INFO] [stderr] Downloaded serde_stacker v0.1.14 [INFO] [stderr] Downloaded anstyle-wincon v3.0.6 [INFO] [stderr] Downloaded quinn v0.11.9 [INFO] [stderr] Downloaded env_logger v0.11.5 [INFO] [stderr] Downloaded serde_derive v1.0.223 [INFO] [stderr] Downloaded env_filter v0.1.2 [INFO] [stderr] Downloaded clap v4.5.20 [INFO] [stderr] Downloaded lexical-util v1.0.7 [INFO] [stderr] Downloaded clap_builder v4.5.20 [INFO] [stderr] Downloaded bytesize v1.3.0 [INFO] [stderr] Downloaded csv-core v0.1.12 [INFO] [stderr] Downloaded polars-stream v0.51.0 [INFO] [stderr] Downloaded skiplist v0.6.0 [INFO] [stderr] Downloaded clap_derive v4.5.18 [INFO] [stderr] Downloaded object_store v0.12.4 [INFO] [stderr] Downloaded noodles-tabix v0.57.0 [INFO] [stderr] Downloaded 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v0.12.1 [INFO] [stderr] Downloaded cc v1.2.39 [INFO] [stderr] Downloaded noodles-fastq v0.21.0 [INFO] [stderr] Downloaded polars-mem-engine v0.51.0 [INFO] [stderr] Downloaded polars-plan v0.51.0 [INFO] [stderr] Downloaded polars-parquet v0.51.0 [INFO] [stderr] Downloaded polars-arrow-format v0.2.1 [INFO] [stderr] Downloaded polars-arrow v0.51.0 [INFO] [stderr] Downloaded polars-schema v0.51.0 [INFO] [stderr] Downloaded rand_distr v0.5.1 [INFO] [stderr] Downloaded quick-xml v0.38.3 [INFO] [stderr] Downloaded quinn-proto v0.11.13 [INFO] [stderr] Downloaded reqwest v0.12.23 [INFO] [stderr] Downloaded pyo3-macros-backend v0.25.0 [INFO] [stderr] Downloaded noodles-sam v0.79.0 [INFO] [stderr] Downloaded polars-time v0.51.0 [INFO] [stderr] Downloaded rustix v0.38.41 [INFO] [stderr] Downloaded bincode_derive v2.0.1 [INFO] [stderr] Downloaded libz-rs-sys v0.5.2 [INFO] [stderr] Downloaded raw-cpuid v11.6.0 [INFO] [stderr] Downloaded quinn-udp v0.5.14 [INFO] [stderr] Downloaded polars-error v0.51.0 [INFO] [stderr] Downloaded proc-macro2 v1.0.89 [INFO] [stderr] Downloaded polars-dtype v0.51.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:94a0c148923f5b2b52a63ef0eeb1882ad339ab61bce784c8077cbe41c61feb6c" "/opt/rustwide/cargo-home/bin/cargo" "+8202d110516c6bd87cee375e9a9b774db499015c" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 52f57b3d69c4b5de0f2a904026af29feff2b96b8a1770f2859b1d2c5b502b64c [INFO] running `Command { std: "docker" "start" "-a" "52f57b3d69c4b5de0f2a904026af29feff2b96b8a1770f2859b1d2c5b502b64c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "52f57b3d69c4b5de0f2a904026af29feff2b96b8a1770f2859b1d2c5b502b64c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "52f57b3d69c4b5de0f2a904026af29feff2b96b8a1770f2859b1d2c5b502b64c", kill_on_drop: false }` [INFO] [stdout] 52f57b3d69c4b5de0f2a904026af29feff2b96b8a1770f2859b1d2c5b502b64c [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:94a0c148923f5b2b52a63ef0eeb1882ad339ab61bce784c8077cbe41c61feb6c" "/opt/rustwide/cargo-home/bin/cargo" "+8202d110516c6bd87cee375e9a9b774db499015c" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 7d7ad76ac4ab5067dfff6b31f32b624ffc3f29d1480b9df08c10b5eb33a9a4be [INFO] running `Command { std: "docker" "start" "-a" "7d7ad76ac4ab5067dfff6b31f32b624ffc3f29d1480b9df08c10b5eb33a9a4be", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.89 [INFO] [stderr] Compiling unicode-ident v1.0.13 [INFO] [stderr] Compiling libc v0.2.175 [INFO] [stderr] Compiling crossbeam-utils v0.8.20 [INFO] [stderr] Compiling serde_core v1.0.223 [INFO] [stderr] Compiling serde v1.0.223 [INFO] [stderr] Compiling target-lexicon v0.13.2 [INFO] [stderr] Checking aho-corasick v1.1.3 [INFO] [stderr] Checking regex-syntax v0.8.5 [INFO] [stderr] Compiling once_cell v1.20.2 [INFO] [stderr] Checking crossbeam-epoch v0.9.18 [INFO] [stderr] Checking crossbeam-deque v0.8.5 [INFO] [stderr] Checking foldhash v0.1.5 [INFO] [stderr] Checking rayon-core v1.12.1 [INFO] [stderr] Compiling quote v1.0.37 [INFO] [stderr] Compiling syn v2.0.87 [INFO] [stderr] Checking bitflags v2.6.0 [INFO] [stderr] Checking rayon v1.10.0 [INFO] [stderr] Checking allocator-api2 v0.2.21 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Checking itoa v1.0.14 [INFO] [stderr] Compiling pyo3-build-config v0.25.0 [INFO] [stderr] Checking ryu v1.0.18 [INFO] [stderr] Compiling memoffset v0.9.1 [INFO] [stderr] Compiling getrandom v0.3.3 [INFO] [stderr] Compiling find-msvc-tools v0.1.2 [INFO] [stderr] Compiling lock_api v0.4.13 [INFO] [stderr] Compiling cc v1.2.39 [INFO] [stderr] Checking unindent v0.2.4 [INFO] [stderr] Compiling indoc v2.0.6 [INFO] [stderr] Compiling parking_lot_core v0.9.11 [INFO] [stderr] Compiling zerocopy v0.8.27 [INFO] [stderr] Checking regex-automata v0.4.8 [INFO] [stderr] Checking smallvec v1.15.1 [INFO] [stderr] Checking rand_core v0.9.3 [INFO] [stderr] Checking parking_lot v0.12.4 [INFO] [stderr] Compiling signal-hook v0.3.18 [INFO] [stderr] Compiling pyo3-macros-backend v0.25.0 [INFO] [stderr] Compiling pyo3-ffi v0.25.0 [INFO] [stderr] Compiling pyo3 v0.25.0 [INFO] [stderr] Checking array-init-cursor v0.2.1 [INFO] [stderr] Checking signal-hook-registry v1.4.6 [INFO] [stderr] Compiling slotmap v1.0.7 [INFO] [stderr] Compiling rustix v0.38.41 [INFO] [stderr] Checking castaway v0.2.4 [INFO] [stderr] Compiling 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v0.51.0 [INFO] [stderr] Checking debug_unsafe v0.1.3 [INFO] [stderr] Compiling crc32fast v1.5.0 [INFO] [stderr] Checking rand v0.9.2 [INFO] [stderr] Checking atoi_simd v0.16.1 [INFO] [stderr] Checking zlib-rs v0.5.2 [INFO] [stderr] Checking lexical-util v1.0.7 [INFO] [stderr] Checking anstyle v1.0.9 [INFO] [stderr] Checking fast-float2 v0.2.3 [INFO] [stderr] Checking strength_reduce v0.2.4 [INFO] [stderr] Checking adler2 v2.0.1 [INFO] [stderr] Checking anstream v0.6.17 [INFO] [stderr] Checking miniz_oxide v0.8.9 [INFO] [stderr] Compiling anyhow v1.0.94 [INFO] [stderr] Checking boxcar v0.2.14 [INFO] [stderr] Checking crossbeam-channel v0.5.15 [INFO] [stderr] Compiling polars-core v0.51.0 [INFO] [stderr] Compiling libm v0.2.15 [INFO] [stderr] Checking crossterm v0.28.1 [INFO] [stderr] Checking clap_lex v0.7.2 [INFO] [stderr] Checking unicode-width v0.2.1 [INFO] [stderr] Checking unicode-segmentation v1.12.0 [INFO] [stderr] Checking clap_builder v4.5.20 [INFO] [stderr] Checking 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Checking unicode-width v0.1.14 [INFO] [stderr] Checking number_prefix v0.4.0 [INFO] [stderr] Compiling serde_json v1.0.140 [INFO] [stderr] Checking plotters v0.3.7 [INFO] [stderr] Checking is-terminal v0.4.16 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Checking console v0.15.8 [INFO] [stderr] Checking indicatif v0.17.8 [INFO] [stderr] Checking thiserror v1.0.69 [INFO] [stderr] Checking hashbrown v0.15.5 [INFO] [stderr] Checking compact_str v0.9.0 [INFO] [stderr] Checking csv v1.3.1 [INFO] [stderr] Checking seq_io v0.3.4 [INFO] [stderr] Checking ciborium v0.2.2 [INFO] [stderr] Checking indexmap v2.11.0 [INFO] [stderr] Checking planus v1.1.1 [INFO] [stderr] Checking tinytemplate v1.2.1 [INFO] [stderr] Checking criterion v0.5.1 [INFO] [stderr] Checking polars-arrow-format v0.2.1 [INFO] [stderr] Checking noodles-csi v0.51.0 [INFO] [stderr] Checking noodles-sam v0.79.0 [INFO] [stderr] Checking noodles-tabix v0.57.0 [INFO] [stderr] Checking epimetheus-core v0.7.6 (/opt/rustwide/workdir/epimetheus-core) [INFO] [stderr] Checking noodles-bam v0.83.0 [INFO] [stderr] Checking polars-error v0.51.0 [INFO] [stderr] Checking epimetheus-io v0.8.0 (/opt/rustwide/workdir/epimetheus-io) [INFO] [stderr] Checking polars-dtype v0.51.0 [INFO] [stderr] Checking polars-row v0.51.0 [INFO] [stderr] Checking polars-parquet v0.51.0 [INFO] [stderr] Checking polars-time v0.51.0 [INFO] [stderr] Checking polars-io v0.51.0 [INFO] [stderr] Checking epimetheus-orchestration v0.8.0 (/opt/rustwide/workdir/epimetheus-orchestration) [INFO] [stderr] Checking pyo3-polars v0.24.0 [INFO] [stderr] Checking epimetheus v0.8.0 (/opt/rustwide/workdir/epimetheus-cli) [INFO] [stderr] Checking epimetheus-py v0.7.7 (/opt/rustwide/workdir/epimetheus-py) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 04s [INFO] running `Command { std: "docker" "inspect" "7d7ad76ac4ab5067dfff6b31f32b624ffc3f29d1480b9df08c10b5eb33a9a4be", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7d7ad76ac4ab5067dfff6b31f32b624ffc3f29d1480b9df08c10b5eb33a9a4be", kill_on_drop: false }` [INFO] [stdout] 7d7ad76ac4ab5067dfff6b31f32b624ffc3f29d1480b9df08c10b5eb33a9a4be