[INFO] cloning repository https://github.com/samuelburger27/PanGraphX [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/samuelburger27/PanGraphX" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsamuelburger27%2FPanGraphX", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsamuelburger27%2FPanGraphX'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] adc07ffa4191e606753eff5396be28a4e6d8f113 [INFO] checking samuelburger27/PanGraphX/adc07ffa4191e606753eff5396be28a4e6d8f113 against master#bb779a91568ac1ee0b8a9dcb6b69219ef30b18a3 for pr-149328 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsamuelburger27%2FPanGraphX" "/workspace/builds/worker-0-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc1/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/samuelburger27/PanGraphX [INFO] finished tweaking git repo https://github.com/samuelburger27/PanGraphX [INFO] tweaked toml for git repo https://github.com/samuelburger27/PanGraphX written to /workspace/builds/worker-0-tc1/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/samuelburger27/PanGraphX on toolchain bb779a91568ac1ee0b8a9dcb6b69219ef30b18a3 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+bb779a91568ac1ee0b8a9dcb6b69219ef30b18a3" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/samuelburger27/PanGraphX already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+bb779a91568ac1ee0b8a9dcb6b69219ef30b18a3" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating crates.io index [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded link-cplusplus v1.0.12 [INFO] [stderr] Downloaded codespan-reporting v0.13.1 [INFO] [stderr] Downloaded derive-new v0.6.0 [INFO] [stderr] Downloaded bio-types v1.0.4 [INFO] [stderr] Downloaded triple_accel v0.4.0 [INFO] [stderr] Downloaded simba v0.9.1 [INFO] [stderr] Downloaded gbwt v0.3.1 [INFO] [stderr] Downloaded cxxbridge-cmd v1.0.194 [INFO] [stderr] Downloaded cxx-build v1.0.194 [INFO] [stderr] Downloaded cxx v1.0.194 [INFO] [stderr] Downloaded simple-sds-sbwt v0.3.2 [INFO] [stderr] Downloaded cxxbridge-macro v1.0.194 [INFO] [stderr] Downloaded derefable v0.1.0 [INFO] [stderr] Downloaded bio v3.0.0 [INFO] [stderr] Downloaded editdistancek v1.0.2 [INFO] [stderr] Downloaded newtype_derive v0.1.6 [INFO] [stderr] Downloaded cxxbridge-flags v1.0.194 [INFO] [stderr] Downloaded gfa v0.10.1 [INFO] [stderr] Downloaded odgi-ffi v1.1.3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:61361fe0aef631f17e9d025a70c5a647956f8c671dd02950a60ad3f5cc5526d7" "/opt/rustwide/cargo-home/bin/cargo" "+bb779a91568ac1ee0b8a9dcb6b69219ef30b18a3" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] e7f2991180e44a621e3ad1c9cf34ff6e8ee6c551ed52c1ae388438bb849fe1a6 [INFO] running `Command { std: "docker" "start" "-a" "e7f2991180e44a621e3ad1c9cf34ff6e8ee6c551ed52c1ae388438bb849fe1a6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "e7f2991180e44a621e3ad1c9cf34ff6e8ee6c551ed52c1ae388438bb849fe1a6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e7f2991180e44a621e3ad1c9cf34ff6e8ee6c551ed52c1ae388438bb849fe1a6", kill_on_drop: false }` [INFO] [stdout] e7f2991180e44a621e3ad1c9cf34ff6e8ee6c551ed52c1ae388438bb849fe1a6 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:61361fe0aef631f17e9d025a70c5a647956f8c671dd02950a60ad3f5cc5526d7" "/opt/rustwide/cargo-home/bin/cargo" "+bb779a91568ac1ee0b8a9dcb6b69219ef30b18a3" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] aa66952d2fae1cd30a8d9d982bbe4b05480755b2d0276f1e4515107912cc15ae [INFO] running `Command { std: "docker" "start" "-a" "aa66952d2fae1cd30a8d9d982bbe4b05480755b2d0276f1e4515107912cc15ae", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.103 [INFO] [stderr] Compiling libm v0.2.15 [INFO] [stderr] Checking memchr v2.7.6 [INFO] [stderr] Compiling zerocopy v0.8.33 [INFO] [stderr] Compiling serde_core v1.0.228 [INFO] [stderr] Checking regex-syntax v0.8.8 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Compiling scratch v1.0.9 [INFO] [stderr] Compiling link-cplusplus v1.0.12 [INFO] [stderr] Compiling cxxbridge-flags v1.0.194 [INFO] [stderr] Compiling termcolor v1.4.1 [INFO] [stderr] Compiling unicode-width v0.2.2 [INFO] [stderr] Checking getrandom v0.2.17 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling syn v0.15.44 [INFO] [stderr] Compiling cxx v1.0.194 [INFO] [stderr] Checking rand_core v0.6.4 [INFO] [stderr] Compiling lexical-core v0.7.6 [INFO] [stderr] Compiling anyhow v1.0.100 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling rustix v1.1.2 [INFO] [stderr] Compiling nom v5.1.3 [INFO] [stderr] Compiling codespan-reporting v0.13.1 [INFO] [stderr] Compiling cmake v0.1.57 [INFO] [stderr] Compiling thiserror v2.0.17 [INFO] [stderr] Compiling fs_extra v1.3.0 [INFO] [stderr] Checking arrayvec v0.5.2 [INFO] [stderr] Checking aho-corasick v1.1.3 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking log v0.4.28 [INFO] [stderr] Checking linux-raw-sys v0.11.0 [INFO] [stderr] Checking indexmap v2.13.0 [INFO] [stderr] Checking hashbrown v0.15.5 [INFO] [stderr] Checking csv-core v0.1.13 [INFO] [stderr] Compiling quote v1.0.41 [INFO] [stderr] Checking getrandom v0.3.4 [INFO] [stderr] Checking either v1.15.0 [INFO] [stderr] Checking foldhash v0.2.0 [INFO] [stderr] Checking fixedbitset v0.5.7 [INFO] [stderr] Checking once_cell v1.21.3 [INFO] [stderr] Compiling syn v2.0.108 [INFO] [stderr] Checking bit-vec v0.8.0 [INFO] [stderr] Compiling proc-macro-error-attr2 v2.0.0 [INFO] [stderr] Checking itertools v0.14.0 [INFO] [stderr] Checking bstr v0.2.17 [INFO] [stderr] Checking memmap v0.7.0 [INFO] [stderr] Checking bit-set v0.8.0 [INFO] [stderr] Checking simple-sds-sbwt v0.3.2 [INFO] [stderr] Checking bytecount v0.6.9 [INFO] [stderr] Checking editdistancek v1.0.2 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking triple_accel v0.4.0 [INFO] [stderr] Checking strum v0.26.3 [INFO] [stderr] Checking anstyle-query v1.1.4 [INFO] [stderr] Compiling time-core v0.1.6 [INFO] [stderr] Checking deranged v0.5.5 [INFO] [stderr] Checking anstream v0.6.21 [INFO] [stderr] Checking regex-automata v0.4.13 [INFO] [stderr] Checking petgraph v0.8.3 [INFO] [stderr] Checking num_threads v0.1.7 [INFO] [stderr] Compiling time-macros v0.2.24 [INFO] [stderr] Checking clap_lex v0.7.6 [INFO] [stderr] Checking clap_builder v4.5.50 [INFO] [stderr] Checking gbwt v0.3.1 [INFO] [stderr] Checking num-complex v0.4.6 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Checking ppv-lite86 v0.2.21 [INFO] [stderr] Checking csv v1.4.0 [INFO] [stderr] Checking num-rational v0.4.2 [INFO] [stderr] Checking ordered-float v5.1.0 [INFO] [stderr] Checking ndarray v0.16.1 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Checking tempfile v3.23.0 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Checking jiff v0.2.15 [INFO] [stderr] Checking time v0.3.44 [INFO] [stderr] Compiling derefable v0.1.0 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Checking regex v1.12.2 [INFO] [stderr] Checking simplelog v0.12.2 [INFO] [stderr] Checking env_filter v0.1.4 [INFO] [stderr] Compiling cxx-build v1.0.194 [INFO] [stderr] Compiling proc-macro-error2 v2.0.1 [INFO] [stderr] Compiling bytemuck_derive v1.10.2 [INFO] [stderr] Compiling serde_derive v1.0.228 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling thiserror-impl v2.0.17 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling cxxbridge-macro v1.0.194 [INFO] [stderr] Compiling getset v0.1.6 [INFO] [stderr] Compiling clap_derive v4.5.49 [INFO] [stderr] Checking enum-map v2.7.3 [INFO] [stderr] Checking bytemuck v1.24.0 [INFO] [stderr] Checking safe_arch v0.7.4 [INFO] [stderr] Checking gfa v0.10.1 [INFO] [stderr] Checking clap v4.5.50 [INFO] [stderr] Checking thiserror v1.0.69 [INFO] [stderr] Checking bio-types v1.0.4 [INFO] [stderr] Compiling odgi-ffi v1.1.3 [INFO] [stderr] Checking wide v0.7.33 [INFO] [stderr] Checking serde v1.0.228 [INFO] [stderr] Checking env_logger v0.11.8 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking multimap v0.10.1 [INFO] [stderr] Checking bv v0.11.1 [INFO] [stderr] Checking simba v0.9.1 [INFO] [stderr] error: could not compile `simba` (lib) [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/bb779a91568ac1ee0b8a9dcb6b69219ef30b18a3/bin/rustc --crate-name simba --edition=2018 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/simba-0.9.1/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata -C embed-bitcode=no -C debuginfo=2 --cfg 'feature="std"' --cfg 'feature="wide"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("cordic", "decimal", "default", "fixed", "libm", "libm_force", "partial_fixed_point_support", "portable_simd", "rand", "rkyv", "rkyv-serialize", "serde", "serde_serialize", "std", "wide"))' -C metadata=349a332e257c455c -C extra-filename=-0b3f5f1bab0fff8f --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern approx=/opt/rustwide/target/debug/deps/libapprox-47411005e50c8fb9.rmeta --extern num_complex=/opt/rustwide/target/debug/deps/libnum_complex-7fb44a1afca96b61.rmeta --extern num_traits=/opt/rustwide/target/debug/deps/libnum_traits-314a28d551676042.rmeta --extern paste=/opt/rustwide/target/debug/deps/libpaste-c5e5e8a2bd161c29.so --extern wide=/opt/rustwide/target/debug/deps/libwide-f84ccec2c9fea35c.rmeta --cap-lints allow --cap-lints=forbid` (signal: 9, SIGKILL: kill) [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: failed to run custom build command for `odgi-ffi v1.1.3` [INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation. [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/odgi-ffi-d56140bfccef4631/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] CMAKE_TOOLCHAIN_FILE_x86_64-unknown-linux-gnu = None [INFO] [stderr] CMAKE_TOOLCHAIN_FILE_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CMAKE_TOOLCHAIN_FILE = None [INFO] [stderr] CMAKE_TOOLCHAIN_FILE = None [INFO] [stderr] CMAKE_GENERATOR_x86_64-unknown-linux-gnu = None [INFO] [stderr] CMAKE_GENERATOR_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CMAKE_GENERATOR = None [INFO] [stderr] CMAKE_GENERATOR = None [INFO] [stderr] CMAKE_PREFIX_PATH_x86_64-unknown-linux-gnu = None [INFO] [stderr] CMAKE_PREFIX_PATH_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CMAKE_PREFIX_PATH = None [INFO] [stderr] CMAKE_PREFIX_PATH = None [INFO] [stderr] CMAKE_x86_64-unknown-linux-gnu = None [INFO] [stderr] CMAKE_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CMAKE = None [INFO] [stderr] CMAKE = None [INFO] [stderr] -- The CXX compiler identification is GNU 13.3.0 [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ - skipped [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") [INFO] [stderr] -- Could NOT find pybind11 (missing: pybind11_DIR) [INFO] [stderr] -- Building with CPU-only support. [INFO] [stderr] -- [INFO] [stderr] [INFO] [stderr] -- Checking for module 'sdsl-lite' [INFO] [stderr] -- Package 'sdsl-lite', required by 'virtual:world', not found [INFO] [stderr] -- Checking for module 'libdivsufsort' [INFO] [stderr] -- Package 'libdivsufsort', required by 'virtual:world', not found [INFO] [stderr] -- Compiling odgi sources with PIC=ON [INFO] [stderr] -- ODGI CMAKE_BUILD_TYPE: Generic [INFO] [stderr] -- ODGI CMAKE_CXX_FLAGS: -ffunction-sections -fdata-sections -fPIC -m64 -w -fPIC [INFO] [stderr] -- ODGI CMAKE_C_FLAGS: -ffunction-sections -fdata-sections -fPIC -m64 -w -fPIC [INFO] [stderr] -- Found OpenMP_CXX: -fopenmp (found version "4.5") [INFO] [stderr] -- Found OpenMP: TRUE (found version "4.5") [INFO] [stderr] -- pybind11 v2.12.0 dev1 [INFO] [stderr] -- Found Python: /usr/bin/python3 (found suitable version "3.12.3", minimum required is "3.6") found components: Interpreter Development.Module Development.Embed [INFO] [stderr] -- Performing Test HAS_FLTO [INFO] [stderr] -- Performing Test HAS_FLTO - Success [INFO] [stderr] -- Configuring done (3.7s) [INFO] [stderr] -- Generating done (0.2s) [INFO] [stderr] -- Build files have been written to: /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/build [INFO] [stderr] [ 1%] Creating directories for 'libbf-EXT' [INFO] [stderr] [ 1%] Creating directories for 'sdsl-lite' [INFO] [stderr] [ 2%] Creating directories for 'dynamic' [INFO] [stderr] [ 2%] No download step for 'dynamic' [INFO] [stderr] [ 2%] Creating directories for 'hopscotch_map' [INFO] [stderr] [ 2%] No download step for 'libbf-EXT' [INFO] [stderr] [ 2%] No update step for 'dynamic' [INFO] [stderr] [ 2%] Creating directories for 'gfakluge' [INFO] [stderr] [ 3%] Creating directories for 'intervaltree' [INFO] [stderr] [ 4%] No download step for 'sdsl-lite' [INFO] [stderr] [ 4%] Creating directories for 'handlegraph' [INFO] [stderr] [ 5%] Creating directories for 'sparsepp' [INFO] [stderr] [ 5%] No patch step for 'dynamic' [INFO] [stderr] [ 6%] Creating directories for 'ska' [INFO] [stderr] [ 6%] Creating directories for 'cgranges' [INFO] [stderr] [ 6%] Creating directories for 'ips4o' [INFO] [stderr] [ 6%] No update step for 'libbf-EXT' [INFO] [stderr] [ 6%] No download step for 'sparsepp' [INFO] [stderr] [ 6%] Creating directories for 'mmmulti' [INFO] [stderr] [ 6%] Creating directories for 'tayweeargs' [INFO] [stderr] [ 6%] No download step for 'hopscotch_map' [INFO] [stderr] [ 8%] No download step for 'handlegraph' [INFO] [stderr] [ 8%] No download step for 'intervaltree' [INFO] [stderr] [ 7%] Creating directories for 'atomicqueue' [INFO] [stderr] [ 8%] No update step for 'sdsl-lite' [INFO] [stderr] [ 9%] No configure step for 'dynamic' [INFO] [stderr] [ 9%] No download step for 'mmmulti' [INFO] [stderr] [ 9%] Creating directories for 'bbhash' [INFO] [stderr] [ 9%] No patch step for 'libbf-EXT' [INFO] [stderr] [ 9%] No update step for 'intervaltree' [INFO] [stderr] [ 9%] No update step for 'hopscotch_map' [INFO] [stderr] [ 10%] No download step for 'ips4o' [INFO] [stderr] [ 10%] No download step for 'atomicqueue' [INFO] [stderr] [ 10%] No download step for 'gfakluge' [INFO] [stderr] [ 10%] No download step for 'cgranges' [INFO] [stderr] [ 11%] No download step for 'ska' [INFO] [stderr] [ 11%] No patch step for 'hopscotch_map' [INFO] [stderr] [ 11%] No update step for 'handlegraph' [INFO] [stderr] [ 11%] No update step for 'sparsepp' [INFO] [stderr] [ 12%] No update step for 'ips4o' [INFO] [stderr] [ 12%] No patch step for 'intervaltree' [INFO] [stderr] [ 13%] No update step for 'mmmulti' [INFO] [stderr] [ 14%] No download step for 'bbhash' [INFO] [stderr] [ 14%] No update step for 'atomicqueue' [INFO] [stderr] [ 14%] No build step for 'dynamic' [INFO] [stderr] [ 15%] No patch step for 'sparsepp' [INFO] [stderr] [ 15%] No update step for 'ska' [INFO] [stderr] [ 15%] No download step for 'tayweeargs' [INFO] [stderr] [ 16%] No patch step for 'sdsl-lite' [INFO] [stderr] [ 16%] No patch step for 'mmmulti' [INFO] [stderr] [ 15%] No configure step for 'intervaltree' [INFO] [stderr] [ 15%] No patch step for 'ips4o' [INFO] [stderr] [ 16%] No configure step for 'hopscotch_map' [INFO] [stderr] [ 17%] No patch step for 'handlegraph' [INFO] [stderr] [ 17%] No update step for 'bbhash' [INFO] [stderr] [ 17%] No install step for 'dynamic' [INFO] [stderr] [ 18%] No build step for 'intervaltree' [INFO] [stderr] [ 18%] No update step for 'cgranges' [INFO] [stderr] [ 18%] No update step for 'tayweeargs' [INFO] [stderr] [ 18%] No patch step for 'atomicqueue' [INFO] [stderr] [ 19%] No configure step for 'sparsepp' [INFO] [stderr] [ 19%] No patch step for 'cgranges' [INFO] [stderr] [ 19%] Performing configure step for 'sdsl-lite' [INFO] [stderr] [ 20%] Performing configure step for 'libbf-EXT' [INFO] [stderr] [ 20%] No install step for 'intervaltree' [INFO] [stderr] [ 20%] No configure step for 'atomicqueue' [INFO] [stderr] [ 20%] No patch step for 'ska' [INFO] [stderr] [ 20%] No configure step for 'ips4o' [INFO] [stderr] [ 20%] Completed 'dynamic' [INFO] [stderr] [ 21%] No patch step for 'bbhash' [INFO] [stderr] [ 22%] No patch step for 'tayweeargs' [INFO] [stderr] [ 23%] No update step for 'gfakluge' [INFO] [stderr] [ 23%] No configure step for 'mmmulti' [INFO] [stderr] [ 23%] Performing configure step for 'handlegraph' [INFO] [stderr] [ 23%] No build step for 'sparsepp' [INFO] [stderr] [ 24%] No build step for 'atomicqueue' [INFO] [stderr] [ 25%] No build step for 'hopscotch_map' [INFO] [stderr] [ 26%] Performing configure step for 'tayweeargs' [INFO] [stderr] [ 27%] No configure step for 'cgranges' [INFO] [stderr] [ 27%] Completed 'intervaltree' [INFO] [stderr] [ 27%] No configure step for 'ska' [INFO] [stderr] [ 27%] No install step for 'atomicqueue' [INFO] [stderr] [ 27%] No patch step for 'gfakluge' [INFO] [stderr] [ 27%] Built target dynamic [INFO] [stderr] [ 27%] No build step for 'ips4o' [INFO] [stderr] [ 27%] Completed 'atomicqueue' [INFO] [stderr] [ 27%] No build step for 'cgranges' [INFO] [stderr] [ 27%] Creating directories for 'structures' [INFO] [stderr] [ 27%] Built target intervaltree [INFO] [stderr] -- The C compiler identification is GNU 13.3.0 [INFO] [stderr] [ 27%] No configure step for 'bbhash' [INFO] [stderr] -- The CXX compiler identification is GNU 13.3.0 [INFO] [stderr] [ 27%] No build step for 'ska' [INFO] [stderr] [ 27%] No build step for 'mmmulti' [INFO] [stderr] [ 27%] Built target atomicqueue [INFO] [stderr] [ 27%] No install step for 'cgranges' [INFO] [stderr] [ 27%] No install step for 'sparsepp' [INFO] [stderr] [ 27%] No configure step for 'gfakluge' [INFO] [stderr] [ 27%] No build step for 'bbhash' [INFO] [stderr] [ 27%] Creating directories for 'picosha256' [INFO] [stderr] [ 27%] No install step for 'ips4o' [INFO] [stderr] -- The CXX compiler identification is GNU 13.3.0 [INFO] [stderr] [ 27%] No download step for 'structures' [INFO] [stderr] [ 28%] No install step for 'hopscotch_map' [INFO] [stderr] -- The CXX compiler identification is GNU 13.3.0 [INFO] [stderr] [ 29%] No install step for 'mmmulti' [INFO] [stderr] [ 29%] Completed 'cgranges' [INFO] [stderr] [ 30%] No update step for 'structures' [INFO] [stderr] [ 30%] No install step for 'ska' [INFO] [stderr] [ 31%] Completed 'ips4o' [INFO] [stderr] -- The C compiler identification is GNU 13.3.0 [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] [ 32%] No build step for 'gfakluge' [INFO] [stderr] [ 33%] Creating directories for 'sgd2' [INFO] [stderr] [ 34%] No download step for 'picosha256' [INFO] [stderr] [ 34%] Completed 'sparsepp' [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] [ 34%] No patch step for 'structures' [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- The CXX compiler identification is GNU 13.3.0 [INFO] [stderr] [ 34%] No install step for 'bbhash' [INFO] [stderr] [ 34%] Built target ips4o [INFO] [stderr] [ 35%] No install step for 'gfakluge' [INFO] [stderr] [ 35%] Completed 'hopscotch_map' [INFO] [stderr] [ 34%] No update step for 'picosha256' [INFO] [stderr] [ 36%] Completed 'mmmulti' [INFO] [stderr] [ 36%] No download step for 'sgd2' [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] [ 37%] Completed 'ska' [INFO] [stderr] [ 37%] Built target mmmulti [INFO] [stderr] [ 37%] No configure step for 'structures' [INFO] [stderr] [ 37%] Built target cgranges [INFO] [stderr] [ 38%] Completed 'bbhash' [INFO] [stderr] [ 37%] Creating directories for 'httplib' [INFO] [stderr] [ 38%] Built target sparsepp [INFO] [stderr] [ 39%] No build step for 'structures' [INFO] [stderr] [ 39%] Creating directories for 'random_distributions' [INFO] [stderr] [ 39%] No update step for 'sgd2' [INFO] [stderr] [ 39%] Completed 'gfakluge' [INFO] [stderr] [ 39%] Built target hopscotch_map [INFO] [stderr] [ 40%] No patch step for 'picosha256' [INFO] [stderr] [ 40%] No configure step for 'picosha256' [INFO] [stderr] [ 41%] No download step for 'httplib' [INFO] [stderr] [ 41%] Built target bbhash [INFO] [stderr] [ 41%] Built target ska [INFO] [stderr] [ 41%] Creating directories for 'atomicbitvector' [INFO] [stderr] [ 41%] No patch step for 'sgd2' [INFO] [stderr] [ 41%] No build step for 'picosha256' [INFO] [stderr] [ 41%] Creating directories for 'dirtyzipf' [INFO] [stderr] [ 42%] No configure step for 'sgd2' [INFO] [stderr] [ 43%] Creating directories for 'mio' [INFO] [stderr] [ 43%] Creating directories for 'xoshiro' [INFO] [stderr] [ 43%] No download step for 'dirtyzipf' [INFO] [stderr] [ 44%] No install step for 'structures' [INFO] [stderr] [ 44%] Built target gfakluge [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ - skipped [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] [ 44%] No install step for 'picosha256' [INFO] [stderr] [ 44%] No build step for 'sgd2' [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] [ 45%] No download step for 'atomicbitvector' [INFO] [stderr] [ 45%] No download step for 'random_distributions' [INFO] [stderr] [ 45%] No update step for 'httplib' [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] [ 45%] No download step for 'mio' [INFO] [stderr] [ 45%] No update step for 'random_distributions' [INFO] [stderr] [ 45%] No download step for 'xoshiro' [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ - skipped [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] [ 46%] Completed 'picosha256' [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ - skipped [INFO] [stderr] [ 46%] No update step for 'mio' [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] [ 46%] No update step for 'dirtyzipf' [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] [ 46%] Completed 'structures' [INFO] [stderr] [ 46%] No update step for 'atomicbitvector' [INFO] [stderr] [ 47%] No update step for 'xoshiro' [INFO] [stderr] -- Configuring done (1.8s) [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc - skipped [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Performing Test CMAKE_HAVE_LIBC_PTHREAD [INFO] [stderr] [ 47%] No patch step for 'mio' [INFO] [stderr] [ 47%] No patch step for 'dirtyzipf' [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Generating done (0.0s) [INFO] [stderr] -- Build files have been written to: /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/build/tayweeargs-prefix/src/tayweeargs-build [INFO] [stderr] [ 47%] No install step for 'sgd2' [INFO] [stderr] [ 47%] Performing build step for 'tayweeargs' [INFO] [stderr] [ 47%] No configure step for 'dirtyzipf' [INFO] [stderr] [ 47%] No patch step for 'random_distributions' [INFO] [stderr] [ 48%] No patch step for 'httplib' [INFO] [stderr] [ 48%] Completed 'sgd2' [INFO] [stderr] [ 49%] No patch step for 'atomicbitvector' [INFO] [stderr] [ 49%] Built target picosha256 [INFO] [stderr] [ 50%] No configure step for 'mio' [INFO] [stderr] [ 50%] No configure step for 'httplib' [INFO] [stderr] [ 50%] No patch step for 'xoshiro' [INFO] [stderr] [ 50%] No configure step for 'atomicbitvector' [INFO] [stderr] [ 9%] Building CXX object CMakeFiles/completion.dir/examples/completion.cxx.o [INFO] [stderr] [ 18%] Building CXX object CMakeFiles/gitlike.dir/examples/gitlike.cxx.o [INFO] [stderr] [ 27%] Building CXX object CMakeFiles/argstest.dir/test.cxx.o [INFO] [stderr] [ 50%] No build step for 'dirtyzipf' [INFO] [stderr] [ 50%] No configure step for 'random_distributions' [INFO] [stderr] [ 50%] No build step for 'httplib' [INFO] [stderr] [ 50%] Built target structures [INFO] [stderr] [ 50%] Built target sgd2 [INFO] [stderr] [ 50%] No install step for 'httplib' [INFO] [stderr] [ 50%] No build step for 'mio' [INFO] [stderr] [ 36%] Building CXX object CMakeFiles/argstest-multiple-inclusion.dir/test/multiple_inclusion_1.cxx.o [INFO] [stderr] [ 50%] No configure step for 'xoshiro' [INFO] [stderr] [ 51%] No install step for 'dirtyzipf' [INFO] [stderr] [ 51%] No build step for 'atomicbitvector' [INFO] [stderr] [ 45%] Building CXX object CMakeFiles/argstest-multiple-inclusion.dir/test/multiple_inclusion_2.cxx.o [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] [ 52%] Completed 'httplib' [INFO] [stderr] [ 54%] Building CXX object CMakeFiles/argstest-windows-h.dir/test/windows_h.cxx.o [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc - skipped [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] [ 53%] Completed 'dirtyzipf' [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Compiler is recent enough to support C++11. [INFO] [stderr] -- Performing Test HAVE_GCC_STD=C__11__WALL__WEXTRA__DNDEBUG [INFO] [stderr] [ 53%] No install step for 'atomicbitvector' [INFO] [stderr] [ 53%] No install step for 'mio' [INFO] [stderr] [ 55%] No build step for 'xoshiro' [INFO] [stderr] [ 54%] No build step for 'random_distributions' [INFO] [stderr] [ 55%] Built target httplib [INFO] [stderr] [ 56%] No install step for 'xoshiro' [INFO] [stderr] [ 57%] No install step for 'random_distributions' [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] [ 57%] Completed 'atomicbitvector' [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ - skipped [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Configuring done (3.1s) [INFO] [stderr] -- Found Threads: TRUE [INFO] [stderr] [ 57%] Built target dirtyzipf [INFO] [stderr] [ 57%] Completed 'mio' [INFO] [stderr] [ 57%] Completed 'xoshiro' [INFO] [stderr] [ 57%] Completed 'random_distributions' [INFO] [stderr] -- Configuring done (3.4s) [INFO] [stderr] -- Generating done (0.1s) [INFO] [stderr] -- Build files have been written to: /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/build/handlegraph-prefix/src/handlegraph-build [INFO] [stderr] [ 57%] Performing build step for 'handlegraph' [INFO] [stderr] [ 57%] Built target mio [INFO] [stderr] [ 57%] Built target atomicbitvector [INFO] [stderr] [ 57%] Built target xoshiro [INFO] [stderr] [ 57%] Built target random_distributions [INFO] [stderr] -- Generating done (0.4s) [INFO] [stderr] -- Performing Test HAVE_GCC_STD=C__11__WALL__WEXTRA__DNDEBUG - Success [INFO] [stderr] -- Performing Test HAVE_GCC_O3__FFAST_MATH__FUNROLL_LOOPS [INFO] [stderr] -- Build files have been written to: /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/build/libbf-EXT-prefix/src/libbf-EXT-build [INFO] [stderr] [ 2%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/dfs.cpp.o [INFO] [stderr] [ 5%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/deletable_handle_graph.cpp.o [INFO] [stderr] [ 8%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/handle_graph.cpp.o [INFO] [stderr] [ 11%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/path_metadata.cpp.o [INFO] [stderr] [ 14%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/path_handle_graph.cpp.o [INFO] [stderr] [ 17%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/mutable_handle_graph.cpp.o [INFO] [stderr] [ 57%] Performing build step for 'libbf-EXT' [INFO] [stderr] [ 20%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/mutable_path_metadata.cpp.o [INFO] [stderr] [ 4%] Building CXX object CMakeFiles/libbf_static.dir/src/bitvector.cpp.o [INFO] [stderr] -- Performing Test HAVE_GCC_O3__FFAST_MATH__FUNROLL_LOOPS - Success [INFO] [stderr] [ 22%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/path_position_handle_graph.cpp.o [INFO] [stderr] -- Performing Test HAVE_GCC_MSSE4.2__MARCH=NATIVE [INFO] [stderr] [ 8%] Building CXX object CMakeFiles/libbf_static.dir/src/counter_vector.cpp.o [INFO] [stderr] -- Performing Test HAVE_GCC_MSSE4.2__MARCH=NATIVE - Success [INFO] [stderr] -- Performing Test HAVE_CLANG_MSSE4.2__MARCH=NATIVE [INFO] [stderr] -- Performing Test HAVE_CLANG_MSSE4.2__MARCH=NATIVE - Success [INFO] [stderr] -- Performing Test HAVE_CXA_DEMANGLE [INFO] [stderr] [ 25%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/mutable_path_handle_graph.cpp.o [INFO] [stderr] [ 28%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/ranked_handle_graph.cpp.o [INFO] [stderr] [ 63%] Linking CXX executable argstest-multiple-inclusion [INFO] [stderr] [ 63%] Built target argstest-multiple-inclusion [INFO] [stderr] -- Performing Test HAVE_CXA_DEMANGLE - Success [INFO] [stderr] -- Compiler supports DEMANGLE. [INFO] [stderr] -- Performing Test HAVE_GCC_DHAVE_CXA_DEMANGLE [INFO] [stderr] [ 13%] Building CXX object CMakeFiles/libbf_shared.dir/src/bitvector.cpp.o [INFO] [stderr] [ 17%] Building CXX object CMakeFiles/libbf_static.dir/src/hash.cpp.o [INFO] [stderr] [ 21%] Building CXX object CMakeFiles/libbf_static.dir/src/bloom_filter/a2.cpp.o [INFO] [stderr] -- Performing Test HAVE_GCC_DHAVE_CXA_DEMANGLE - Success [INFO] [stderr] -- Found Git: /usr/bin/git (found version "2.43.0") [INFO] [stderr] [ 31%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/serializable.cpp.o [INFO] [stderr] -- Performing Test HAVE_GCC_WALL [INFO] [stderr] [ 26%] Building CXX object CMakeFiles/libbf_shared.dir/src/counter_vector.cpp.o [INFO] [stderr] [ 34%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/snarl_decomposition.cpp.o [INFO] [stderr] -- Performing Test HAVE_GCC_WALL - Success [INFO] [stderr] -- Performing Test HAVE_GCC_FOMIT_FRAME_POINTER [INFO] [stderr] -- Performing Test HAVE_GCC_FOMIT_FRAME_POINTER - Success [INFO] [stderr] -- Looking for inttypes.h [INFO] [stderr] [ 30%] Building CXX object CMakeFiles/libbf_static.dir/src/bloom_filter/basic.cpp.o [INFO] [stderr] [ 37%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/trivially_serializable.cpp.o [INFO] [stderr] -- Looking for inttypes.h - found [INFO] [stderr] -- Looking for memory.h [INFO] [stderr] [ 40%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/types.cpp.o [INFO] [stderr] [ 42%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/copy_graph.cpp.o [INFO] [stderr] [ 34%] Building CXX object CMakeFiles/libbf_shared.dir/src/bloom_filter/a2.cpp.o [INFO] [stderr] [ 39%] Building CXX object CMakeFiles/libbf_shared.dir/src/hash.cpp.o [INFO] [stderr] -- Looking for memory.h - found [INFO] [stderr] -- Looking for stddef.h [INFO] [stderr] [ 43%] Building CXX object CMakeFiles/libbf_shared.dir/src/bloom_filter/basic.cpp.o [INFO] [stderr] -- Looking for stddef.h - found [INFO] [stderr] -- Looking for stdint.h [INFO] [stderr] [ 45%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/append_graph.cpp.o [INFO] [stderr] -- Looking for stdint.h - found [INFO] [stderr] -- Looking for stdlib.h [INFO] [stderr] [ 47%] Building CXX object CMakeFiles/libbf_static.dir/src/bloom_filter/bitwise.cpp.o [INFO] [stderr] -- Looking for stdlib.h - found [INFO] [stderr] -- Looking for string.h [INFO] [stderr] [ 48%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/are_equivalent.cpp.o [INFO] [stderr] [ 52%] Building CXX object CMakeFiles/libbf_shared.dir/src/bloom_filter/bitwise.cpp.o [INFO] [stderr] [ 72%] Linking CXX executable argstest-windows-h [INFO] [stderr] [ 51%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/find_tips.cpp.o [INFO] [stderr] -- Looking for string.h - found [INFO] [stderr] -- Looking for strings.h [INFO] [stderr] [ 56%] Building CXX object CMakeFiles/libbf_static.dir/src/bloom_filter/counting.cpp.o [INFO] [stderr] [ 81%] Linking CXX executable completion [INFO] [stderr] -- Looking for strings.h - found [INFO] [stderr] -- Looking for sys/types.h [INFO] [stderr] [ 60%] Building CXX object CMakeFiles/libbf_shared.dir/src/bloom_filter/counting.cpp.o [INFO] [stderr] [ 81%] Built target argstest-windows-h [INFO] [stderr] [ 54%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/topological_sort.cpp.o [INFO] [stderr] [ 65%] Building CXX object CMakeFiles/libbf_static.dir/src/bloom_filter/stable.cpp.o [INFO] [stderr] [ 69%] Building CXX object CMakeFiles/libbf_shared.dir/src/bloom_filter/stable.cpp.o [INFO] [stderr] -- Looking for sys/types.h - found [INFO] [stderr] -- Performing Test HAVE_INLINE [INFO] [stderr] [ 57%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/apply_orientations.cpp.o [INFO] [stderr] [ 81%] Built target completion [INFO] [stderr] [ 60%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/is_single_stranded.cpp.o [INFO] [stderr] [ 62%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/count_walks.cpp.o [INFO] [stderr] -- Performing Test HAVE_INLINE - Success [INFO] [stderr] -- Performing Test HAVE___INLINE [INFO] [stderr] [ 65%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/eades_algorithm.cpp.o [INFO] [stderr] [ 68%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/dagify.cpp.o [INFO] [stderr] -- Performing Test HAVE___INLINE - Success [INFO] [stderr] -- Performing Test HAVE___INLINE__ [INFO] [stderr] [ 74%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/find_shortest_paths.cpp.o [INFO] [stderr] [ 71%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/strongly_connected_components.cpp.o [INFO] [stderr] -- Performing Test HAVE___INLINE__ - 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done [INFO] [stderr] -- Looking for PRId32 [INFO] [stderr] [ 88%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/chop.cpp.o [INFO] [stderr] [ 91%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/extend.cpp.o [INFO] [stderr] [ 94%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/weakly_connected_components.cpp.o [INFO] [stderr] -- Looking for PRId32 - found [INFO] [stderr] -- Check size of int64_t [INFO] [stderr] [ 78%] Linking CXX shared library lib/libbf.so [INFO] [stderr] -- Check size of int64_t - done [INFO] [stderr] -- Looking for PRId64 [INFO] [stderr] -- Looking for PRId64 - found [INFO] [stderr] -- Found PythonInterp: /usr/bin/python3 (found version "3.12.3") [INFO] [stderr] -- Performing Test CMAKE_HAVE_LIBC_PTHREAD [INFO] [stderr] [ 78%] Built target libbf_shared [INFO] [stderr] [ 82%] Building CXX object test/bf/CMakeFiles/bf.dir/bf.cc.o [INFO] [stderr] [ 86%] Building CXX object test/CMakeFiles/bf-test.dir/tests.cpp.o [INFO] [stderr] -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success [INFO] [stderr] -- Found Threads: TRUE [INFO] [stderr] -- Looking for C++ include cstdio [INFO] [stderr] [ 91%] Building CXX object test/bf/CMakeFiles/bf.dir/configuration.cc.o [INFO] [stderr] -- Looking for C++ include cstdio - found [INFO] [stderr] -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) [INFO] [stderr] -- Configuring done (37.7s) [INFO] [stderr] -- Generating done (1.2s) [INFO] [stderr] -- Build files have been written to: /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/build/sdsl-lite-prefix/src/sdsl-lite-build [INFO] [stderr] [ 57%] Performing build step for 'sdsl-lite' [INFO] [stderr] [ 0%] Building CXX object lib/CMakeFiles/sdsl.dir/bits.cpp.o [INFO] [stderr] [ 0%] Building C object external/libdivsufsort/lib/CMakeFiles/divsufsort64.dir/divsufsort.o [INFO] [stderr] [ 0%] Building C object external/libdivsufsort/lib/CMakeFiles/divsufsort64.dir/trsort.o [INFO] [stderr] [ 0%] Building CXX object external/googletest/googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o [INFO] [stderr] [ 10%] Building C object external/libdivsufsort/lib/CMakeFiles/divsufsort64.dir/sssort.o [INFO] [stderr] [ 10%] Building C object external/libdivsufsort/lib/CMakeFiles/divsufsort.dir/divsufsort.o [INFO] [stderr] [ 10%] Building CXX object lib/CMakeFiles/sdsl.dir/bp_support_algorithm.cpp.o [INFO] [stderr] [ 10%] Building C object external/libdivsufsort/lib/CMakeFiles/divsufsort.dir/sssort.o [INFO] [stderr] [ 20%] Building C object external/libdivsufsort/lib/CMakeFiles/divsufsort64.dir/utils.o [INFO] [stderr] [ 20%] Building C object external/libdivsufsort/lib/CMakeFiles/divsufsort.dir/trsort.o [INFO] [stderr] [ 20%] Building C object external/libdivsufsort/lib/CMakeFiles/divsufsort.dir/utils.o [INFO] [stderr] [ 20%] Building CXX object lib/CMakeFiles/sdsl.dir/coder_elias_delta.cpp.o [INFO] [stderr] [ 30%] Building CXX object lib/CMakeFiles/sdsl.dir/coder_elias_gamma.cpp.o [INFO] [stderr] [ 30%] Linking C static library libdivsufsort64.a [INFO] [stderr] [ 30%] Building CXX object lib/CMakeFiles/sdsl.dir/coder_fibonacci.cpp.o [INFO] [stderr] [ 30%] Building CXX object lib/CMakeFiles/sdsl.dir/config.cpp.o [INFO] [stderr] [ 30%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_config.cpp.o [INFO] [stderr] [ 30%] Built target divsufsort64 [INFO] [stderr] [ 40%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_isa.cpp.o [INFO] [stderr] [ 40%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_lcp.cpp.o [INFO] [stderr] [ 40%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_lcp_helper.cpp.o [INFO] [stderr] [ 40%] Linking C static library libdivsufsort.a [INFO] [stderr] [ 40%] Built target divsufsort [INFO] [stderr] [ 40%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_sa.cpp.o [INFO] [stderr] [ 50%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_sa_se.cpp.o [INFO] [stderr] [ 50%] Building CXX object lib/CMakeFiles/sdsl.dir/csa_alphabet_strategy.cpp.o [INFO] [stderr] [ 50%] Building CXX object lib/CMakeFiles/sdsl.dir/io.cpp.o [INFO] [stderr] [ 50%] Building CXX object lib/CMakeFiles/sdsl.dir/lcp_support_tree.cpp.o [INFO] [stderr] [ 60%] Building CXX object lib/CMakeFiles/sdsl.dir/louds_tree.cpp.o [INFO] [stderr] [ 60%] Building CXX object lib/CMakeFiles/sdsl.dir/memory_management.cpp.o [INFO] [stderr] [ 60%] Building CXX object lib/CMakeFiles/sdsl.dir/nn_dict_dynamic.cpp.o [INFO] [stderr] [ 60%] Building CXX object lib/CMakeFiles/sdsl.dir/ram_filebuf.cpp.o [INFO] [stderr] [ 70%] Building CXX object lib/CMakeFiles/sdsl.dir/ram_fs.cpp.o [INFO] [stderr] [ 70%] Building CXX object lib/CMakeFiles/sdsl.dir/rrr_vector_15.cpp.o [INFO] [stderr] [ 70%] Building CXX object lib/CMakeFiles/sdsl.dir/sd_vector.cpp.o [INFO] [stderr] [ 95%] Linking CXX executable ../../bin/bf [INFO] [stderr] [ 95%] Built target bf [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] running: cd "/opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/build" && CMAKE_PREFIX_PATH="" LC_ALL="C" "cmake" "/opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build" "-B" "/opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/build" "-DBUILD_TESTS=OFF" "-DODGI_BUILD_DOCS=OFF" "-DCMAKE_EXE_LINKER_FLAGS=-lpthread" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64 -w" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64 -w" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64 -w" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Generic" [INFO] [stderr] fatal: not a git repository (or any parent up to mount point /opt/rustwide) [INFO] [stderr] Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). [INFO] [stderr] diff: /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/include/odgi_git_version.hpp: No such file or directory [INFO] [stderr] CMake Warning: [INFO] [stderr] Manually-specified variables were not used by the project: [INFO] [stderr] [INFO] [stderr] BUILD_TESTS [INFO] [stderr] CMAKE_ASM_COMPILER [INFO] [stderr] CMAKE_ASM_FLAGS [INFO] [stderr] CMAKE_C_COMPILER [INFO] [stderr] ODGI_BUILD_DOCS [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] running: cd "/opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/build" && LC_ALL="C" MAKEFLAGS="-j --jobserver-fds=8,9 --jobserver-auth=8,9" "cmake" "--build" "/opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/build" "--target" "install" "--config" "Generic" [INFO] [stderr] CMake Warning (dev) at CMakeLists.txt:3 (project): [INFO] [stderr] cmake_minimum_required() should be called prior to this top-level project() [INFO] [stderr] call. Please see the cmake-commands(7) manual for usage documentation of [INFO] [stderr] both commands. [INFO] [stderr] This warning is for project developers. Use -Wno-dev to suppress it. [INFO] [stderr] [INFO] [stderr] CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): [INFO] [stderr] Compatibility with CMake < 3.5 will be removed from a future version of [INFO] [stderr] CMake. [INFO] [stderr] [INFO] [stderr] Update the VERSION argument value or use a ... suffix to tell [INFO] [stderr] CMake that the project does not need compatibility with older versions. [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Warning (dev) at /usr/share/cmake-3.28/Modules/GNUInstallDirs.cmake:243 (message): [INFO] [stderr] Unable to determine default CMAKE_INSTALL_LIBDIR directory because no [INFO] [stderr] target architecture is known. Please enable at least one language before [INFO] [stderr] including GNUInstallDirs. [INFO] [stderr] Call Stack (most recent call first): [INFO] [stderr] CMakeLists.txt:5 (include) [INFO] [stderr] This warning is for project developers. Use -Wno-dev to suppress it. [INFO] [stderr] [INFO] [stderr] CMake Deprecation Warning at CMakeLists.txt:22 (cmake_minimum_required): [INFO] [stderr] Compatibility with CMake < 3.5 will be removed from a future version of [INFO] [stderr] CMake. [INFO] [stderr] [INFO] [stderr] Update the VERSION argument value or use a ... suffix to tell [INFO] [stderr] CMake that the project does not need compatibility with older versions. [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Warning (dev) at /usr/share/cmake-3.28/Modules/GNUInstallDirs.cmake:243 (message): [INFO] [stderr] Unable to determine default CMAKE_INSTALL_LIBDIR directory because no [INFO] [stderr] target architecture is known. Please enable at least one language before [INFO] [stderr] including GNUInstallDirs. [INFO] [stderr] Call Stack (most recent call first): [INFO] [stderr] CMakeLists.txt:24 (include) [INFO] [stderr] This warning is for project developers. Use -Wno-dev to suppress it. [INFO] [stderr] [INFO] [stderr] CMake Deprecation Warning at CMakeLists.txt:7 (cmake_minimum_required): [INFO] [stderr] Compatibility with CMake < 3.5 will be removed from a future version of [INFO] [stderr] CMake. [INFO] [stderr] [INFO] [stderr] Update the VERSION argument value or use a ... suffix to tell [INFO] [stderr] CMake that the project does not need compatibility with older versions. [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] libhandlegraph is root project or external_project [INFO] [stderr] git found: /usr/bin/git [INFO] [stderr] CMake Deprecation Warning at external/libdivsufsort/CMakeLists.txt:2 (cmake_minimum_required): [INFO] [stderr] Compatibility with CMake < 3.5 will be removed from a future version of [INFO] [stderr] CMake. [INFO] [stderr] [INFO] [stderr] Update the VERSION argument value or use a ... suffix to tell [INFO] [stderr] CMake that the project does not need compatibility with older versions. [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Warning (dev) at external/libdivsufsort/CMakeLists.txt:7 (project): [INFO] [stderr] Policy CMP0048 is not set: project() command manages VERSION variables. [INFO] [stderr] Run "cmake --help-policy CMP0048" for policy details. Use the cmake_policy [INFO] [stderr] command to set the policy and suppress this warning. [INFO] [stderr] [INFO] [stderr] The following variable(s) would be set to empty: [INFO] [stderr] [INFO] [stderr] PROJECT_VERSION [INFO] [stderr] PROJECT_VERSION_MAJOR [INFO] [stderr] PROJECT_VERSION_MINOR [INFO] [stderr] PROJECT_VERSION_PATCH [INFO] [stderr] This warning is for project developers. Use -Wno-dev to suppress it. [INFO] [stderr] [INFO] [stderr] CMake Warning (dev) at external/googletest/googletest/CMakeLists.txt:47 (project): [INFO] [stderr] Policy CMP0048 is not set: project() command manages VERSION variables. [INFO] [stderr] Run "cmake --help-policy CMP0048" for policy details. Use the cmake_policy [INFO] [stderr] command to set the policy and suppress this warning. [INFO] [stderr] [INFO] [stderr] The following variable(s) would be set to empty: [INFO] [stderr] [INFO] [stderr] PROJECT_VERSION [INFO] [stderr] PROJECT_VERSION_MAJOR [INFO] [stderr] PROJECT_VERSION_MINOR [INFO] [stderr] PROJECT_VERSION_PATCH [INFO] [stderr] This warning is for project developers. Use -Wno-dev to suppress it. [INFO] [stderr] [INFO] [stderr] CMake Deprecation Warning at external/googletest/googletest/CMakeLists.txt:48 (cmake_minimum_required): [INFO] [stderr] Compatibility with CMake < 3.5 will be removed from a future version of [INFO] [stderr] CMake. [INFO] [stderr] [INFO] [stderr] Update the VERSION argument value or use a ... suffix to tell [INFO] [stderr] CMake that the project does not need compatibility with older versions. [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Warning (dev) at external/googletest/googletest/cmake/internal_utils.cmake:211 (find_package): [INFO] [stderr] Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules [INFO] [stderr] are removed. Run "cmake --help-policy CMP0148" for policy details. Use [INFO] [stderr] the cmake_policy command to set the policy and suppress this warning. [INFO] [stderr] [INFO] [stderr] Call Stack (most recent call first): [INFO] [stderr] external/googletest/googletest/CMakeLists.txt:60 (include) [INFO] [stderr] This warning is for project developers. Use -Wno-dev to suppress it. [INFO] [stderr] [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] gmake[5]: *** [CMakeFiles/argstest.dir/build.make:76: CMakeFiles/argstest.dir/test.cxx.o] Error 1 [INFO] [stderr] gmake[4]: *** [CMakeFiles/Makefile2:143: CMakeFiles/argstest.dir/all] Error 2 [INFO] [stderr] gmake[3]: *** [Makefile:166: all] Error 2 [INFO] [stderr] gmake[2]: *** [CMakeFiles/tayweeargs.dir/build.make:86: tayweeargs-prefix/src/tayweeargs-stamp/tayweeargs-build] Error 2 [INFO] [stderr] gmake[1]: *** [CMakeFiles/Makefile2:341: CMakeFiles/tayweeargs.dir/all] Error 2 [INFO] [stderr] gmake[1]: *** Waiting for unfinished jobs.... [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] gmake[5]: *** [CMakeFiles/handlegraph_objs.dir/build.make:132: CMakeFiles/handlegraph_objs.dir/src/path_metadata.cpp.o] Error 1 [INFO] [stderr] gmake[5]: *** Waiting for unfinished jobs.... [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] gmake[5]: *** [test/CMakeFiles/bf-test.dir/build.make:76: test/CMakeFiles/bf-test.dir/tests.cpp.o] Error 1 [INFO] [stderr] gmake[4]: *** [CMakeFiles/Makefile2:954: test/CMakeFiles/bf-test.dir/all] Error 2 [INFO] [stderr] gmake[4]: *** Waiting for unfinished jobs.... [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] gmake[5]: *** [CMakeFiles/handlegraph_objs.dir/build.make:496: CMakeFiles/handlegraph_objs.dir/src/chop.cpp.o] Error 1 [INFO] [stderr] gmake[4]: *** [CMakeFiles/Makefile2:87: CMakeFiles/handlegraph_objs.dir/all] Error 2 [INFO] [stderr] gmake[3]: *** [Makefile:136: all] Error 2 [INFO] [stderr] gmake[2]: *** [CMakeFiles/handlegraph.dir/build.make:86: handlegraph-prefix/src/handlegraph-stamp/handlegraph-build] Error 2 [INFO] [stderr] gmake[1]: *** [CMakeFiles/Makefile2:315: CMakeFiles/handlegraph.dir/all] Error 2 [INFO] [stderr] In file included from /usr/include/c++/13/string:54, [INFO] [stderr] from /usr/include/c++/13/bits/locale_classes.h:40, [INFO] [stderr] from /usr/include/c++/13/bits/ios_base.h:41, [INFO] [stderr] from /usr/include/c++/13/ios:44, [INFO] [stderr] from /usr/include/c++/13/istream:40, [INFO] [stderr] from /usr/include/c++/13/fstream:40, [INFO] [stderr] from /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc:2: [INFO] [stderr] In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', [INFO] [stderr] inlined from 'bool std::operator==(const __cxx11::basic_string<_CharT, _Traits, _Alloc>&, const _CharT*) [with _CharT = char; _Traits = char_traits; _Alloc = allocator]' at /usr/include/c++/13/bits/basic_string.h:3730:24, [INFO] [stderr] inlined from 'util::trial run(const config&)' at /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc:36:12: [INFO] [stderr] /usr/include/c++/13/bits/basic_string.h:1072:16: warning: using a dangling pointer to an unnamed temporary [-Wdangling-pointer=] [INFO] [stderr] 1072 | { return _M_string_length; } [INFO] [stderr] | ^~~~~~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc: In function 'util::trial run(const config&)': [INFO] [stderr] /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc:33:42: note: unnamed temporary defined here [INFO] [stderr] 33 | auto const& type = *cfg.as("type"); [INFO] [stderr] | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ [INFO] [stderr] In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::pointer std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_M_data() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', [INFO] [stderr] inlined from 'const _CharT* std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::data() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/13/bits/basic_string.h:2609:23, [INFO] [stderr] inlined from 'bool std::operator==(const __cxx11::basic_string<_CharT, _Traits, _Alloc>&, const _CharT*) [with _CharT = char; _Traits = char_traits; _Alloc = allocator]' at /usr/include/c++/13/bits/basic_string.h:3731:29, [INFO] [stderr] inlined from 'util::trial run(const config&)' at /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc:36:12: [INFO] [stderr] /usr/include/c++/13/bits/basic_string.h:223:28: warning: dangling pointer to an unnamed temporary may be used [-Wdangling-pointer=] [INFO] [stderr] 223 | { return _M_dataplus._M_p; } [INFO] [stderr] | ^~~~ [INFO] [stderr] /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc: In function 'util::trial run(const config&)': [INFO] [stderr] /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc:33:42: note: unnamed temporary defined here [INFO] [stderr] 33 | auto const& type = *cfg.as("type"); [INFO] [stderr] | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ [INFO] [stderr] In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', [INFO] [stderr] inlined from 'bool std::operator==(const __cxx11::basic_string<_CharT, _Traits, _Alloc>&, const _CharT*) [with _CharT = char; _Traits = char_traits; _Alloc = allocator]' at /usr/include/c++/13/bits/basic_string.h:3730:24, [INFO] [stderr] inlined from 'util::trial run(const config&)' at /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc:49:19: [INFO] [stderr] /usr/include/c++/13/bits/basic_string.h:1072:16: warning: dangling pointer to an unnamed temporary may be used [-Wdangling-pointer=] [INFO] [stderr] 1072 | { return _M_string_length; } [INFO] [stderr] | ^~~~~~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc: In function 'util::trial run(const config&)': [INFO] [stderr] /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc:33:42: note: unnamed temporary defined here [INFO] [stderr] 33 | auto const& type = *cfg.as("type"); [INFO] [stderr] | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ [INFO] [stderr] In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::pointer std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_M_data() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', [INFO] [stderr] inlined from 'const _CharT* std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::data() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/13/bits/basic_string.h:2609:23, [INFO] [stderr] inlined from 'bool std::operator==(const __cxx11::basic_string<_CharT, _Traits, _Alloc>&, const _CharT*) [with _CharT = char; _Traits = char_traits; _Alloc = allocator]' at /usr/include/c++/13/bits/basic_string.h:3731:29, [INFO] [stderr] inlined from 'util::trial run(const config&)' at /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc:49:19: [INFO] [stderr] /usr/include/c++/13/bits/basic_string.h:223:28: warning: dangling pointer to an unnamed temporary may be used [-Wdangling-pointer=] [INFO] [stderr] 223 | { return _M_dataplus._M_p; } [INFO] [stderr] | ^~~~ [INFO] [stderr] /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc: In function 'util::trial run(const config&)': [INFO] [stderr] /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc:33:42: note: unnamed temporary defined here [INFO] [stderr] 33 | auto const& type = *cfg.as("type"); [INFO] [stderr] | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ [INFO] [stderr] In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', [INFO] [stderr] inlined from 'bool std::operator==(const __cxx11::basic_string<_CharT, _Traits, _Alloc>&, const _CharT*) [with _CharT = char; _Traits = char_traits; _Alloc = allocator]' at /usr/include/c++/13/bits/basic_string.h:3730:24, [INFO] [stderr] inlined from 'util::trial run(const config&)' at /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc:59:19: [INFO] [stderr] /usr/include/c++/13/bits/basic_string.h:1072:16: warning: dangling pointer to an unnamed temporary may be used [-Wdangling-pointer=] [INFO] [stderr] 1072 | { return _M_string_length; } [INFO] [stderr] | ^~~~~~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc: In function 'util::trial run(const config&)': [INFO] [stderr] /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc:33:42: note: unnamed temporary defined here [INFO] [stderr] 33 | auto const& type = *cfg.as("type"); [INFO] [stderr] | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ [INFO] [stderr] In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::pointer std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_M_data() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', [INFO] [stderr] inlined from 'const _CharT* std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::data() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/13/bits/basic_string.h:2609:23, [INFO] [stderr] inlined from 'bool std::operator==(const __cxx11::basic_string<_CharT, _Traits, _Alloc>&, const _CharT*) [with _CharT = char; _Traits = char_traits; _Alloc = allocator]' at /usr/include/c++/13/bits/basic_string.h:3731:29, [INFO] [stderr] inlined from 'util::trial run(const config&)' at /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc:59:19: [INFO] [stderr] /usr/include/c++/13/bits/basic_string.h:223:28: warning: dangling pointer to an unnamed temporary may be used [-Wdangling-pointer=] [INFO] [stderr] 223 | { return _M_dataplus._M_p; } [INFO] [stderr] | ^~~~ [INFO] [stderr] /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc: In function 'util::trial run(const config&)': [INFO] [stderr] /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc:33:42: note: unnamed temporary defined here [INFO] [stderr] 33 | auto const& type = *cfg.as("type"); [INFO] [stderr] | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ [INFO] [stderr] In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', [INFO] [stderr] inlined from 'bool std::operator==(const __cxx11::basic_string<_CharT, _Traits, _Alloc>&, const _CharT*) [with _CharT = char; _Traits = char_traits; _Alloc = allocator]' at /usr/include/c++/13/bits/basic_string.h:3730:24, [INFO] [stderr] inlined from 'util::trial run(const config&)' at /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc:69:19: [INFO] [stderr] /usr/include/c++/13/bits/basic_string.h:1072:16: warning: dangling pointer to an unnamed temporary may be used [-Wdangling-pointer=] [INFO] [stderr] 1072 | { return _M_string_length; } [INFO] [stderr] | ^~~~~~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc: In function 'util::trial run(const config&)': [INFO] [stderr] /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc:33:42: note: unnamed temporary defined here [INFO] [stderr] 33 | auto const& type = *cfg.as("type"); [INFO] [stderr] | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ [INFO] [stderr] In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::pointer std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_M_data() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', [INFO] [stderr] inlined from 'const _CharT* std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::data() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/13/bits/basic_string.h:2609:23, [INFO] [stderr] inlined from 'bool std::operator==(const __cxx11::basic_string<_CharT, _Traits, _Alloc>&, const _CharT*) [with _CharT = char; _Traits = char_traits; _Alloc = allocator]' at /usr/include/c++/13/bits/basic_string.h:3731:29, [INFO] [stderr] inlined from 'util::trial run(const config&)' at /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc:69:19: [INFO] [stderr] /usr/include/c++/13/bits/basic_string.h:223:28: warning: dangling pointer to an unnamed temporary may be used [-Wdangling-pointer=] [INFO] [stderr] 223 | { return _M_dataplus._M_p; } [INFO] [stderr] | ^~~~ [INFO] [stderr] /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc: In function 'util::trial run(const config&)': [INFO] [stderr] /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc:33:42: note: unnamed temporary defined here [INFO] [stderr] 33 | auto const& type = *cfg.as("type"); [INFO] [stderr] | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ [INFO] [stderr] In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', [INFO] [stderr] inlined from 'bool std::operator==(const __cxx11::basic_string<_CharT, _Traits, _Alloc>&, const _CharT*) [with _CharT = char; _Traits = char_traits; _Alloc = allocator]' at /usr/include/c++/13/bits/basic_string.h:3730:24, [INFO] [stderr] inlined from 'util::trial run(const config&)' at /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc:89:19: [INFO] [stderr] /usr/include/c++/13/bits/basic_string.h:1072:16: warning: dangling pointer to an unnamed temporary may be used [-Wdangling-pointer=] [INFO] [stderr] 1072 | { return _M_string_length; } [INFO] [stderr] | ^~~~~~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc: In function 'util::trial run(const config&)': [INFO] [stderr] /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc:33:42: note: unnamed temporary defined here [INFO] [stderr] 33 | auto const& type = *cfg.as("type"); [INFO] [stderr] | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ [INFO] [stderr] In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::pointer std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_M_data() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', [INFO] [stderr] inlined from 'const _CharT* std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::data() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/13/bits/basic_string.h:2609:23, [INFO] [stderr] inlined from 'bool std::operator==(const __cxx11::basic_string<_CharT, _Traits, _Alloc>&, const _CharT*) [with _CharT = char; _Traits = char_traits; _Alloc = allocator]' at /usr/include/c++/13/bits/basic_string.h:3731:29, [INFO] [stderr] inlined from 'util::trial run(const config&)' at /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc:89:19: [INFO] [stderr] /usr/include/c++/13/bits/basic_string.h:223:28: warning: dangling pointer to an unnamed temporary may be used [-Wdangling-pointer=] [INFO] [stderr] 223 | { return _M_dataplus._M_p; } [INFO] [stderr] | ^~~~ [INFO] [stderr] /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc: In function 'util::trial run(const config&)': [INFO] [stderr] /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc:33:42: note: unnamed temporary defined here [INFO] [stderr] 33 | auto const& type = *cfg.as("type"); [INFO] [stderr] | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ [INFO] [stderr] In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', [INFO] [stderr] inlined from 'bool std::operator==(const __cxx11::basic_string<_CharT, _Traits, _Alloc>&, const _CharT*) [with _CharT = char; _Traits = char_traits; _Alloc = allocator]' at /usr/include/c++/13/bits/basic_string.h:3730:24, [INFO] [stderr] inlined from 'util::trial run(const config&)' at /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc:96:19: [INFO] [stderr] /usr/include/c++/13/bits/basic_string.h:1072:16: warning: dangling pointer to an unnamed temporary may be used [-Wdangling-pointer=] [INFO] [stderr] 1072 | { return _M_string_length; } [INFO] [stderr] | ^~~~~~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc: In function 'util::trial run(const config&)': [INFO] [stderr] /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc:33:42: note: unnamed temporary defined here [INFO] [stderr] 33 | auto const& type = *cfg.as("type"); [INFO] [stderr] | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ [INFO] [stderr] In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::pointer std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_M_data() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', [INFO] [stderr] inlined from 'const _CharT* std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::data() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/13/bits/basic_string.h:2609:23, [INFO] [stderr] inlined from 'bool std::operator==(const __cxx11::basic_string<_CharT, _Traits, _Alloc>&, const _CharT*) [with _CharT = char; _Traits = char_traits; _Alloc = allocator]' at /usr/include/c++/13/bits/basic_string.h:3731:29, [INFO] [stderr] inlined from 'util::trial run(const config&)' at /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc:96:19: [INFO] [stderr] /usr/include/c++/13/bits/basic_string.h:223:28: warning: dangling pointer to an unnamed temporary may be used [-Wdangling-pointer=] [INFO] [stderr] 223 | { return _M_dataplus._M_p; } [INFO] [stderr] | ^~~~ [INFO] [stderr] /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc: In function 'util::trial run(const config&)': [INFO] [stderr] /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc:33:42: note: unnamed temporary defined here [INFO] [stderr] 33 | auto const& type = *cfg.as("type"); [INFO] [stderr] | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ [INFO] [stderr] In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', [INFO] [stderr] inlined from 'bool std::operator==(const __cxx11::basic_string<_CharT, _Traits, _Alloc>&, const _CharT*) [with _CharT = char; _Traits = char_traits; _Alloc = allocator]' at /usr/include/c++/13/bits/basic_string.h:3730:24, [INFO] [stderr] inlined from 'util::trial run(const config&)' at /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc:36:12: [INFO] [stderr] /usr/include/c++/13/bits/basic_string.h:1072:16: warning: '.util::trial, std::allocator > >::.util::trial, std::allocator > >::._anon_92::value_.std::__cxx11::basic_string::_M_string_length' may be used uninitialized [-Wmaybe-uninitialized] [INFO] [stderr] 1072 | { return _M_string_length; } [INFO] [stderr] | ^~~~~~~~~~~~~~~~ [INFO] [stderr] /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc: In function 'util::trial run(const config&)': [INFO] [stderr] /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc:33:42: note: '' declared here [INFO] [stderr] 33 | auto const& type = *cfg.as("type"); [INFO] [stderr] | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ [INFO] [stderr] In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::pointer std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_M_data() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', [INFO] [stderr] inlined from 'const _CharT* std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::data() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/13/bits/basic_string.h:2609:23, [INFO] [stderr] inlined from 'bool std::operator==(const __cxx11::basic_string<_CharT, _Traits, _Alloc>&, const _CharT*) [with _CharT = char; _Traits = char_traits; _Alloc = allocator]' at /usr/include/c++/13/bits/basic_string.h:3731:29, [INFO] [stderr] inlined from 'util::trial run(const config&)' at /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc:36:12: [INFO] [stderr] /usr/include/c++/13/bits/basic_string.h:223:28: warning: '.util::trial, std::allocator > >::.util::trial, std::allocator > >::._anon_92::value_.std::__cxx11::basic_string::_M_dataplus.std::__cxx11::basic_string::_Alloc_hider::_M_p' may be used uninitialized [-Wmaybe-uninitialized] [INFO] [stderr] 223 | { return _M_dataplus._M_p; } [INFO] [stderr] | ^~~~ [INFO] [stderr] /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc: In function 'util::trial run(const config&)': [INFO] [stderr] /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc:33:42: note: '' declared here [INFO] [stderr] 33 | auto const& type = *cfg.as("type"); [INFO] [stderr] | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ [INFO] [stderr] In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::pointer std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_M_data() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', [INFO] [stderr] inlined from 'const _CharT* std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::data() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/13/bits/basic_string.h:2609:23, [INFO] [stderr] inlined from 'bool std::operator==(const __cxx11::basic_string<_CharT, _Traits, _Alloc>&, const _CharT*) [with _CharT = char; _Traits = char_traits; _Alloc = allocator]' at /usr/include/c++/13/bits/basic_string.h:3731:29, [INFO] [stderr] inlined from 'util::trial run(const config&)' at /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc:49:19: [INFO] [stderr] /usr/include/c++/13/bits/basic_string.h:223:28: warning: '.util::trial, std::allocator > >::.util::trial, std::allocator > >::._anon_92::value_.std::__cxx11::basic_string::_M_dataplus.std::__cxx11::basic_string::_Alloc_hider::_M_p' may be used uninitialized [-Wmaybe-uninitialized] [INFO] [stderr] 223 | { return _M_dataplus._M_p; } [INFO] [stderr] | ^~~~ [INFO] [stderr] /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc: In function 'util::trial run(const config&)': [INFO] [stderr] /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc:33:42: note: '' declared here [INFO] [stderr] 33 | auto const& type = *cfg.as("type"); [INFO] [stderr] | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ [INFO] [stderr] In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::pointer std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_M_data() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', [INFO] [stderr] inlined from 'const _CharT* std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::data() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/13/bits/basic_string.h:2609:23, [INFO] [stderr] inlined from 'bool std::operator==(const __cxx11::basic_string<_CharT, _Traits, _Alloc>&, const _CharT*) [with _CharT = char; _Traits = char_traits; _Alloc = allocator]' at /usr/include/c++/13/bits/basic_string.h:3731:29, [INFO] [stderr] inlined from 'util::trial run(const config&)' at /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc:59:19: [INFO] [stderr] /usr/include/c++/13/bits/basic_string.h:223:28: warning: '.util::trial, std::allocator > >::.util::trial, std::allocator > >::._anon_92::value_.std::__cxx11::basic_string::_M_dataplus.std::__cxx11::basic_string::_Alloc_hider::_M_p' may be used uninitialized [-Wmaybe-uninitialized] [INFO] [stderr] 223 | { return _M_dataplus._M_p; } [INFO] [stderr] | ^~~~ [INFO] [stderr] /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc: In function 'util::trial run(const config&)': [INFO] [stderr] /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc:33:42: note: '' declared here [INFO] [stderr] 33 | auto const& type = *cfg.as("type"); [INFO] [stderr] | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ [INFO] [stderr] In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::pointer std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_M_data() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', [INFO] [stderr] inlined from 'const _CharT* std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::data() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/13/bits/basic_string.h:2609:23, [INFO] [stderr] inlined from 'bool std::operator==(const __cxx11::basic_string<_CharT, _Traits, _Alloc>&, const _CharT*) [with _CharT = char; _Traits = char_traits; _Alloc = allocator]' at /usr/include/c++/13/bits/basic_string.h:3731:29, [INFO] [stderr] inlined from 'util::trial run(const config&)' at /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc:89:19: [INFO] [stderr] /usr/include/c++/13/bits/basic_string.h:223:28: warning: '.util::trial, std::allocator > >::.util::trial, std::allocator > >::._anon_92::value_.std::__cxx11::basic_string::_M_dataplus.std::__cxx11::basic_string::_Alloc_hider::_M_p' may be used uninitialized [-Wmaybe-uninitialized] [INFO] [stderr] 223 | { return _M_dataplus._M_p; } [INFO] [stderr] | ^~~~ [INFO] [stderr] /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc: In function 'util::trial run(const config&)': [INFO] [stderr] /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc:33:42: note: '' declared here [INFO] [stderr] 33 | auto const& type = *cfg.as("type"); [INFO] [stderr] | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ [INFO] [stderr] In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::pointer std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_M_data() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', [INFO] [stderr] inlined from 'const _CharT* std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::data() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/13/bits/basic_string.h:2609:23, [INFO] [stderr] inlined from 'bool std::operator==(const __cxx11::basic_string<_CharT, _Traits, _Alloc>&, const _CharT*) [with _CharT = char; _Traits = char_traits; _Alloc = allocator]' at /usr/include/c++/13/bits/basic_string.h:3731:29, [INFO] [stderr] inlined from 'util::trial run(const config&)' at /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc:96:19: [INFO] [stderr] /usr/include/c++/13/bits/basic_string.h:223:28: warning: '.util::trial, std::allocator > >::.util::trial, std::allocator > >::._anon_92::value_.std::__cxx11::basic_string::_M_dataplus.std::__cxx11::basic_string::_Alloc_hider::_M_p' may be used uninitialized [-Wmaybe-uninitialized] [INFO] [stderr] 223 | { return _M_dataplus._M_p; } [INFO] [stderr] | ^~~~ [INFO] [stderr] /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc: In function 'util::trial run(const config&)': [INFO] [stderr] /opt/rustwide/target/debug/build/odgi-ffi-656ba1d9c7f7ccea/out/odgi-source-for-build/deps/libbf/test/bf/bf.cc:33:42: note: '' declared here [INFO] [stderr] 33 | auto const& type = *cfg.as("type"); [INFO] [stderr] | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] gmake[5]: *** [external/googletest/googletest/CMakeFiles/gtest.dir/build.make:76: external/googletest/googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o] Error 1 [INFO] [stderr] gmake[4]: *** [CMakeFiles/Makefile2:579: external/googletest/googletest/CMakeFiles/gtest.dir/all] Error 2 [INFO] [stderr] gmake[4]: *** Waiting for unfinished jobs.... [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] gmake[5]: *** [lib/CMakeFiles/sdsl.dir/build.make:188: lib/CMakeFiles/sdsl.dir/construct_lcp.cpp.o] Error 1 [INFO] [stderr] gmake[5]: *** Waiting for unfinished jobs.... [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] gmake[5]: *** [lib/CMakeFiles/sdsl.dir/build.make:90: lib/CMakeFiles/sdsl.dir/bp_support_algorithm.cpp.o] Error 1 [INFO] [stderr] c++: fatal error: Killed signal terminated program cc1plus [INFO] [stderr] compilation terminated. [INFO] [stderr] gmake[5]: *** [lib/CMakeFiles/sdsl.dir/build.make:272: lib/CMakeFiles/sdsl.dir/lcp_support_tree.cpp.o] Error 1 [INFO] [stderr] gmake[3]: *** [Makefile:146: all] Error 2 [INFO] [stderr] gmake[2]: *** [CMakeFiles/libbf-EXT.dir/build.make:86: libbf-EXT-prefix/src/libbf-EXT-stamp/libbf-EXT-build] Error 2 [INFO] [stderr] gmake[1]: *** [CMakeFiles/Makefile2:159: CMakeFiles/libbf-EXT.dir/all] Error 2 [INFO] [stderr] gmake[4]: *** [CMakeFiles/Makefile2:631: lib/CMakeFiles/sdsl.dir/all] Error 2 [INFO] [stderr] gmake[3]: *** [Makefile:156: all] Error 2 [INFO] [stderr] gmake[2]: *** [CMakeFiles/sdsl-lite.dir/build.make:86: sdsl-lite-prefix/src/sdsl-lite-stamp/sdsl-lite-build] Error 2 [INFO] [stderr] gmake[1]: *** [CMakeFiles/Makefile2:211: CMakeFiles/sdsl-lite.dir/all] Error 2 [INFO] [stderr] gmake: *** [Makefile:146: all] Error 2 [INFO] [stderr] [INFO] [stderr] thread 'main' (1620) panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/cmake-0.1.57/src/lib.rs:1132:5: [INFO] [stderr] [INFO] [stderr] command did not execute successfully, got: exit status: 2 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x637e9f2d3a6a - std[6a7ab8118b80ffc4]::backtrace_rs::backtrace::libunwind::trace [INFO] [stderr] at /rustc/bb779a91568ac1ee0b8a9dcb6b69219ef30b18a3/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stderr] 1: 0x637e9f2d3a6a - std[6a7ab8118b80ffc4]::backtrace_rs::backtrace::trace_unsynchronized:: [INFO] [stderr] at /rustc/bb779a91568ac1ee0b8a9dcb6b69219ef30b18a3/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stderr] 2: 0x637e9f2d3a6a - std[6a7ab8118b80ffc4]::sys::backtrace::_print_fmt [INFO] [stderr] at /rustc/bb779a91568ac1ee0b8a9dcb6b69219ef30b18a3/library/std/src/sys/backtrace.rs:74:9 [INFO] [stderr] 3: 0x637e9f2d3a6a - <::print::DisplayBacktrace as core[4f09d25497876873]::fmt::Display>::fmt [INFO] [stderr] at /rustc/bb779a91568ac1ee0b8a9dcb6b69219ef30b18a3/library/std/src/sys/backtrace.rs:44:26 [INFO] [stderr] 4: 0x637e9f2e977a - ::fmt [INFO] [stderr] at /rustc/bb779a91568ac1ee0b8a9dcb6b69219ef30b18a3/library/core/src/fmt/rt.rs:152:76 [INFO] [stderr] 5: 0x637e9f2e977a - core[4f09d25497876873]::fmt::write [INFO] [stderr] 6: 0x637e9f2da572 - std[6a7ab8118b80ffc4]::io::default_write_fmt:: [INFO] [stderr] at /rustc/bb779a91568ac1ee0b8a9dcb6b69219ef30b18a3/library/std/src/io/mod.rs:639:11 [INFO] [stderr] 7: 0x637e9f2da572 - ::write_fmt [INFO] [stderr] at /rustc/bb779a91568ac1ee0b8a9dcb6b69219ef30b18a3/library/std/src/io/mod.rs:1994:13 [INFO] [stderr] 8: 0x637e9f2b2f2f - ::print [INFO] [stderr] at /rustc/bb779a91568ac1ee0b8a9dcb6b69219ef30b18a3/library/std/src/sys/backtrace.rs:47:9 [INFO] [stderr] 9: 0x637e9f2b2f2f - std[6a7ab8118b80ffc4]::panicking::default_hook::{closure#0} [INFO] [stderr] at /rustc/bb779a91568ac1ee0b8a9dcb6b69219ef30b18a3/library/std/src/panicking.rs:292:27 [INFO] [stderr] 10: 0x637e9f2cce91 - std[6a7ab8118b80ffc4]::panicking::default_hook [INFO] [stderr] at /rustc/bb779a91568ac1ee0b8a9dcb6b69219ef30b18a3/library/std/src/panicking.rs:319:9 [INFO] [stderr] 11: 0x637e9f2cd10b - std[6a7ab8118b80ffc4]::panicking::panic_with_hook [INFO] [stderr] at /rustc/bb779a91568ac1ee0b8a9dcb6b69219ef30b18a3/library/std/src/panicking.rs:825:13 [INFO] [stderr] 12: 0x637e9f2b2fe8 - std[6a7ab8118b80ffc4]::panicking::panic_handler::{closure#0} [INFO] [stderr] at /rustc/bb779a91568ac1ee0b8a9dcb6b69219ef30b18a3/library/std/src/panicking.rs:698:13 [INFO] [stderr] 13: 0x637e9f2aa4e9 - std[6a7ab8118b80ffc4]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stderr] at /rustc/bb779a91568ac1ee0b8a9dcb6b69219ef30b18a3/library/std/src/sys/backtrace.rs:182:18 [INFO] [stderr] 14: 0x637e9f2b3b5d - __rustc[ff0b242d31dd16d]::rust_begin_unwind [INFO] [stderr] at /rustc/bb779a91568ac1ee0b8a9dcb6b69219ef30b18a3/library/std/src/panicking.rs:689:5 [INFO] [stderr] 15: 0x637e9f2ea0dc - core[4f09d25497876873]::panicking::panic_fmt [INFO] [stderr] at /rustc/bb779a91568ac1ee0b8a9dcb6b69219ef30b18a3/library/core/src/panicking.rs:80:14 [INFO] [stderr] 16: 0x637e9f2206c7 - cmake[619562b57f72d110]::fail [INFO] [stderr] 17: 0x637e9f220353 - cmake[619562b57f72d110]::run [INFO] [stderr] 18: 0x637e9f2263d4 - ::build [INFO] [stderr] 19: 0x637e9efa70ec - build_script_build[42a3284b555ee1a2]::main [INFO] [stderr] 20: 0x637e9efa9d93 - >::call_once [INFO] [stderr] 21: 0x637e9efa67c6 - std[6a7ab8118b80ffc4]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stderr] 22: 0x637e9efa6d49 - std[6a7ab8118b80ffc4]::rt::lang_start::<()>::{closure#0} [INFO] [stderr] 23: 0x637e9f2cbe84 - <&dyn core[4f09d25497876873]::ops::function::Fn<(), Output = i32> + core[4f09d25497876873]::marker::Sync + core[4f09d25497876873]::panic::unwind_safe::RefUnwindSafe as core[4f09d25497876873]::ops::function::FnOnce<()>>::call_once [INFO] [stderr] at /rustc/bb779a91568ac1ee0b8a9dcb6b69219ef30b18a3/library/core/src/ops/function.rs:287:21 [INFO] [stderr] 24: 0x637e9f2cbe84 - std[6a7ab8118b80ffc4]::panicking::catch_unwind::do_call::<&dyn core[4f09d25497876873]::ops::function::Fn<(), Output = i32> + core[4f09d25497876873]::marker::Sync + core[4f09d25497876873]::panic::unwind_safe::RefUnwindSafe, i32> [INFO] [stderr] at /rustc/bb779a91568ac1ee0b8a9dcb6b69219ef30b18a3/library/std/src/panicking.rs:581:40 [INFO] [stderr] 25: 0x637e9f2cbe84 - std[6a7ab8118b80ffc4]::panicking::catch_unwind:: + core[4f09d25497876873]::marker::Sync + core[4f09d25497876873]::panic::unwind_safe::RefUnwindSafe> [INFO] [stderr] at /rustc/bb779a91568ac1ee0b8a9dcb6b69219ef30b18a3/library/std/src/panicking.rs:544:19 [INFO] [stderr] 26: 0x637e9f2cbe84 - std[6a7ab8118b80ffc4]::panic::catch_unwind::<&dyn core[4f09d25497876873]::ops::function::Fn<(), Output = i32> + core[4f09d25497876873]::marker::Sync + core[4f09d25497876873]::panic::unwind_safe::RefUnwindSafe, i32> [INFO] [stderr] at /rustc/bb779a91568ac1ee0b8a9dcb6b69219ef30b18a3/library/std/src/panic.rs:359:14 [INFO] [stderr] 27: 0x637e9f2cbe84 - std[6a7ab8118b80ffc4]::rt::lang_start_internal::{closure#0} [INFO] [stderr] at /rustc/bb779a91568ac1ee0b8a9dcb6b69219ef30b18a3/library/std/src/rt.rs:175:24 [INFO] [stderr] 28: 0x637e9f2cbe84 - std[6a7ab8118b80ffc4]::panicking::catch_unwind::do_call:: [INFO] [stderr] at /rustc/bb779a91568ac1ee0b8a9dcb6b69219ef30b18a3/library/std/src/panicking.rs:581:40 [INFO] [stderr] 29: 0x637e9f2cbe84 - std[6a7ab8118b80ffc4]::panicking::catch_unwind:: [INFO] [stderr] at /rustc/bb779a91568ac1ee0b8a9dcb6b69219ef30b18a3/library/std/src/panicking.rs:544:19 [INFO] [stderr] 30: 0x637e9f2cbe84 - std[6a7ab8118b80ffc4]::panic::catch_unwind:: [INFO] [stderr] at /rustc/bb779a91568ac1ee0b8a9dcb6b69219ef30b18a3/library/std/src/panic.rs:359:14 [INFO] [stderr] 31: 0x637e9f2cbe84 - std[6a7ab8118b80ffc4]::rt::lang_start_internal [INFO] [stderr] at /rustc/bb779a91568ac1ee0b8a9dcb6b69219ef30b18a3/library/std/src/rt.rs:171:5 [INFO] [stderr] 32: 0x637e9efa67b1 - std[6a7ab8118b80ffc4]::rt::lang_start::<()> [INFO] [stderr] 33: 0x637e9efa9fa5 - main [INFO] [stderr] 34: 0x774dbafb01ca - [INFO] [stderr] 35: 0x774dbafb028b - __libc_start_main [INFO] [stderr] 36: 0x637e9efa0035 - _start [INFO] [stderr] 37: 0x0 - [INFO] running `Command { std: "docker" "inspect" "aa66952d2fae1cd30a8d9d982bbe4b05480755b2d0276f1e4515107912cc15ae", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "aa66952d2fae1cd30a8d9d982bbe4b05480755b2d0276f1e4515107912cc15ae", kill_on_drop: false }` [INFO] [stdout] aa66952d2fae1cd30a8d9d982bbe4b05480755b2d0276f1e4515107912cc15ae