[INFO] cloning repository https://github.com/legaultmarc/genepa-rs
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/legaultmarc/genepa-rs" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Flegaultmarc%2Fgenepa-rs", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Flegaultmarc%2Fgenepa-rs'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 4ee2025b9265ff8ae4ea21980678cb8a011f421e
[INFO] checking legaultmarc/genepa-rs against try#59a256151e578f525a26127f2c3e3a6c7e2982ca for pr-149291-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Flegaultmarc%2Fgenepa-rs" "/workspace/builds/worker-5-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/legaultmarc/genepa-rs
[INFO] finished tweaking git repo https://github.com/legaultmarc/genepa-rs
[INFO] tweaked toml for git repo https://github.com/legaultmarc/genepa-rs written to /workspace/builds/worker-5-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/legaultmarc/genepa-rs on toolchain 59a256151e578f525a26127f2c3e3a6c7e2982ca
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+59a256151e578f525a26127f2c3e3a6c7e2982ca" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/legaultmarc/genepa-rs already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+59a256151e578f525a26127f2c3e3a6c7e2982ca" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[ERROR] error running command: no output for 300 seconds
[INFO] checking legaultmarc/genepa-rs against try#59a256151e578f525a26127f2c3e3a6c7e2982ca for pr-149291-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Flegaultmarc%2Fgenepa-rs" "/workspace/builds/worker-5-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/legaultmarc/genepa-rs
[INFO] finished tweaking git repo https://github.com/legaultmarc/genepa-rs
[INFO] tweaked toml for git repo https://github.com/legaultmarc/genepa-rs written to /workspace/builds/worker-5-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/legaultmarc/genepa-rs on toolchain 59a256151e578f525a26127f2c3e3a6c7e2982ca
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+59a256151e578f525a26127f2c3e3a6c7e2982ca" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/legaultmarc/genepa-rs already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+59a256151e578f525a26127f2c3e3a6c7e2982ca" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded num-complex v0.2.1
[INFO] [stderr]   Downloaded rawpointer v0.1.0
[INFO] [stderr]   Downloaded matrixmultiply v0.1.15
[INFO] [stderr]   Downloaded either v1.5.2
[INFO] [stderr]   Downloaded itertools v0.7.11
[INFO] [stderr]   Downloaded ndarray v0.12.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:94a0c148923f5b2b52a63ef0eeb1882ad339ab61bce784c8077cbe41c61feb6c" "/opt/rustwide/cargo-home/bin/cargo" "+59a256151e578f525a26127f2c3e3a6c7e2982ca" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 11b6272a0158c843dfae47e650ab85e7ce10faf90530f1cdc25f7ccceab495f6
[INFO] running `Command { std: "docker" "start" "-a" "11b6272a0158c843dfae47e650ab85e7ce10faf90530f1cdc25f7ccceab495f6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "11b6272a0158c843dfae47e650ab85e7ce10faf90530f1cdc25f7ccceab495f6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "11b6272a0158c843dfae47e650ab85e7ce10faf90530f1cdc25f7ccceab495f6", kill_on_drop: false }`
[INFO] [stdout] 11b6272a0158c843dfae47e650ab85e7ce10faf90530f1cdc25f7ccceab495f6
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:94a0c148923f5b2b52a63ef0eeb1882ad339ab61bce784c8077cbe41c61feb6c" "/opt/rustwide/cargo-home/bin/cargo" "+59a256151e578f525a26127f2c3e3a6c7e2982ca" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 4729e1253b5a08807cd598a73536017a776ac00af9d640b17fa1ca4914b80457
[INFO] running `Command { std: "docker" "start" "-a" "4729e1253b5a08807cd598a73536017a776ac00af9d640b17fa1ca4914b80457", kill_on_drop: false }`
[INFO] [stderr]    Compiling num-traits v0.2.6
[INFO] [stderr]    Compiling matrixmultiply v0.1.15
[INFO] [stderr]    Compiling num-complex v0.2.1
[INFO] [stderr]    Compiling ndarray v0.12.1
[INFO] [stderr]     Checking rawpointer v0.1.0
[INFO] [stderr]     Checking either v1.5.2
[INFO] [stderr]     Checking itertools v0.7.11
[INFO] [stderr]     Checking genepa_rs v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] error: couldn't read `src/../test_data/common_extracted_1kg.missing.bed`: No such file or directory (os error 2)
[INFO] [stdout]    --> src/plink.rs:386:19
[INFO] [stdout]     |
[INFO] [stdout] 386 |           let bed = include_bytes!(
[INFO] [stdout]     |  ___________________^
[INFO] [stdout] 387 | |             "../test_data/common_extracted_1kg.missing.bed"
[INFO] [stdout] 388 | |         );
[INFO] [stdout]     | |_________^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::f32::NAN`
[INFO] [stdout]  --> src/c_api.rs:1:5
[INFO] [stdout]   |
[INFO] [stdout] 1 | use std::f32::NAN;
[INFO] [stdout]   |     ^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around block return value
[INFO] [stdout]    --> src/plink.rs:370:9
[INFO] [stdout]     |
[INFO] [stdout] 370 | /         (
[INFO] [stdout] 371 | |             first_3_bytes[0] == 0x6c &&
[INFO] [stdout]     | |____________^
[INFO] [stdout] 372 |               first_3_bytes[1] == 0x1b &&
[INFO] [stdout] 373 |               first_3_bytes[2] == 0x01
[INFO] [stdout]     |  _____________________________________^
[INFO] [stdout] 374 | |         )
[INFO] [stdout]     | |_________^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]     |
[INFO] [stdout] 370 ~         first_3_bytes[0] == 0x6c &&
[INFO] [stdout] 371 |             first_3_bytes[1] == 0x1b &&
[INFO] [stdout] 372 ~             first_3_bytes[2] == 0x01
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::f32::NAN`
[INFO] [stdout]  --> src/c_api.rs:1:5
[INFO] [stdout]   |
[INFO] [stdout] 1 | use std::f32::NAN;
[INFO] [stdout]   |     ^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around block return value
[INFO] [stdout]    --> src/plink.rs:370:9
[INFO] [stdout]     |
[INFO] [stdout] 370 | /         (
[INFO] [stdout] 371 | |             first_3_bytes[0] == 0x6c &&
[INFO] [stdout]     | |____________^
[INFO] [stdout] 372 |               first_3_bytes[1] == 0x1b &&
[INFO] [stdout] 373 |               first_3_bytes[2] == 0x01
[INFO] [stdout]     |  _____________________________________^
[INFO] [stdout] 374 | |         )
[INFO] [stdout]     | |_________^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]     |
[INFO] [stdout] 370 ~         first_3_bytes[0] == 0x6c &&
[INFO] [stdout] 371 |             first_3_bytes[1] == 0x1b &&
[INFO] [stdout] 372 ~             first_3_bytes[2] == 0x01
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `r2`
[INFO] [stdout]  --> src/utils.rs:5:74
[INFO] [stdout]   |
[INFO] [stdout] 5 | pub fn compute_ld(mut g: Genotypes, mut other_genotypes: Vec<Genotypes>, r2: bool)
[INFO] [stdout]   |                                                                          ^^ help: if this is intentional, prefix it with an underscore: `_r2`
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `geno_arr_others`
[INFO] [stdout]   --> src/utils.rs:20:9
[INFO] [stdout]    |
[INFO] [stdout] 20 |     let geno_arr_others = ArrayViewMut::from_shape(
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_geno_arr_others`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused return value of `Box::<T>::from_raw` that must be used
[INFO] [stdout]   --> src/c_api.rs:44:9
[INFO] [stdout]    |
[INFO] [stdout] 44 |         Box::from_raw(ptr);
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: call `drop(Box::from_raw(ptr))` if you intend to drop the `Box`
[INFO] [stdout]    = note: `#[warn(unused_must_use)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] help: use `let _ = ...` to ignore the resulting value
[INFO] [stdout]    |
[INFO] [stdout] 44 |         let _ = Box::from_raw(ptr);
[INFO] [stdout]    |         +++++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused return value of `Box::<T>::from_raw` that must be used
[INFO] [stdout]    --> src/c_api.rs:123:9
[INFO] [stdout]     |
[INFO] [stdout] 123 |         Box::from_raw(ptr);
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: call `drop(Box::from_raw(ptr))` if you intend to drop the `Box`
[INFO] [stdout] help: use `let _ = ...` to ignore the resulting value
[INFO] [stdout]     |
[INFO] [stdout] 123 |         let _ = Box::from_raw(ptr);
[INFO] [stdout]     |         +++++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused return value of `Box::<T>::from_raw` that must be used
[INFO] [stdout]    --> src/c_api.rs:132:9
[INFO] [stdout]     |
[INFO] [stdout] 132 |         Box::from_raw(ptr);
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: call `drop(Box::from_raw(ptr))` if you intend to drop the `Box`
[INFO] [stdout] help: use `let _ = ...` to ignore the resulting value
[INFO] [stdout]     |
[INFO] [stdout] 132 |         let _ = Box::from_raw(ptr);
[INFO] [stdout]     |         +++++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused return value of `Box::<T>::from_raw` that must be used
[INFO] [stdout]    --> src/c_api.rs:178:9
[INFO] [stdout]     |
[INFO] [stdout] 178 |         Box::from_raw(ptr);
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: call `drop(Box::from_raw(ptr))` if you intend to drop the `Box`
[INFO] [stdout] help: use `let _ = ...` to ignore the resulting value
[INFO] [stdout]     |
[INFO] [stdout] 178 |         let _ = Box::from_raw(ptr);
[INFO] [stdout]     |         +++++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `r2`
[INFO] [stdout]  --> src/utils.rs:5:74
[INFO] [stdout]   |
[INFO] [stdout] 5 | pub fn compute_ld(mut g: Genotypes, mut other_genotypes: Vec<Genotypes>, r2: bool)
[INFO] [stdout]   |                                                                          ^^ help: if this is intentional, prefix it with an underscore: `_r2`
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `geno_arr_others`
[INFO] [stdout]   --> src/utils.rs:20:9
[INFO] [stdout]    |
[INFO] [stdout] 20 |     let geno_arr_others = ArrayViewMut::from_shape(
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_geno_arr_others`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `genepa_rs` (lib test) due to 1 previous error; 4 warnings emitted
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] running `Command { std: "docker" "inspect" "4729e1253b5a08807cd598a73536017a776ac00af9d640b17fa1ca4914b80457", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4729e1253b5a08807cd598a73536017a776ac00af9d640b17fa1ca4914b80457", kill_on_drop: false }`
[INFO] [stdout] 4729e1253b5a08807cd598a73536017a776ac00af9d640b17fa1ca4914b80457
