[INFO] cloning repository https://github.com/informationsea/sequencetoolkit
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/informationsea/sequencetoolkit" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 1b99116de888026854a0e07b5d5b55c602827592
[INFO] checking informationsea/sequencetoolkit against master#bad50269f8eb0fda214f0478c3afb2c6fbb427fd for pr-149195-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit" "/workspace/builds/worker-0-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/informationsea/sequencetoolkit
[INFO] finished tweaking git repo https://github.com/informationsea/sequencetoolkit
[INFO] tweaked toml for git repo https://github.com/informationsea/sequencetoolkit written to /workspace/builds/worker-0-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/informationsea/sequencetoolkit on toolchain bad50269f8eb0fda214f0478c3afb2c6fbb427fd
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+bad50269f8eb0fda214f0478c3afb2c6fbb427fd" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/informationsea/sequencetoolkit already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+bad50269f8eb0fda214f0478c3afb2c6fbb427fd" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:94a0c148923f5b2b52a63ef0eeb1882ad339ab61bce784c8077cbe41c61feb6c" "/opt/rustwide/cargo-home/bin/cargo" "+bad50269f8eb0fda214f0478c3afb2c6fbb427fd" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] aa138d91a7b2269b6260f0abc0be9384ec97f39a1debc4366f8f16fbaf170f76
[INFO] running `Command { std: "docker" "start" "-a" "aa138d91a7b2269b6260f0abc0be9384ec97f39a1debc4366f8f16fbaf170f76", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "aa138d91a7b2269b6260f0abc0be9384ec97f39a1debc4366f8f16fbaf170f76", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "aa138d91a7b2269b6260f0abc0be9384ec97f39a1debc4366f8f16fbaf170f76", kill_on_drop: false }`
[INFO] [stdout] aa138d91a7b2269b6260f0abc0be9384ec97f39a1debc4366f8f16fbaf170f76
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:94a0c148923f5b2b52a63ef0eeb1882ad339ab61bce784c8077cbe41c61feb6c" "/opt/rustwide/cargo-home/bin/cargo" "+bad50269f8eb0fda214f0478c3afb2c6fbb427fd" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] d44359eca43346f3208389f5fcc59953858dd0841fab5fece5e82c0c122ecc04
[INFO] running `Command { std: "docker" "start" "-a" "d44359eca43346f3208389f5fcc59953858dd0841fab5fece5e82c0c122ecc04", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.155
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[INFO] [stderr]    Compiling synstructure v0.12.6
[INFO] [stderr]     Checking rand_core v0.5.1
[INFO] [stderr]     Checking md-5 v0.10.6
[INFO] [stderr]     Checking object v0.36.2
[INFO] [stderr]     Checking cpufeatures v0.2.12
[INFO] [stderr]     Checking iana-time-zone v0.1.60
[INFO] [stderr]    Compiling serde_json v1.0.122
[INFO] [stderr]     Checking rustc-demangle v0.1.24
[INFO] [stderr]     Checking chrono v0.4.38
[INFO] [stderr]     Checking rand_chacha v0.2.2
[INFO] [stderr]     Checking rmp v0.8.14
[INFO] [stderr]     Checking rmp-serde v1.3.0
[INFO] [stderr]     Checking humantime v1.3.0
[INFO] [stderr]     Checking rand v0.7.3
[INFO] [stderr]     Checking addr2line v0.22.0
[INFO] [stderr]     Checking sha2 v0.10.8
[INFO] [stderr]     Checking sha1 v0.10.6
[INFO] [stderr]     Checking bincode v1.3.3
[INFO] [stderr]     Checking itertools v0.9.0
[INFO] [stderr]     Checking crossbeam-channel v0.5.13
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking termcolor v1.4.1
[INFO] [stderr]     Checking itoa v0.4.8
[INFO] [stderr]     Checking temp-file v0.1.8
[INFO] [stderr]    Compiling sequencetoolkit v0.4.4 (/opt/rustwide/workdir/sequencetoolkit)
[INFO] [stderr]     Checking env_logger v0.7.1
[INFO] [stderr]     Checking geneannot v0.1.0 (/opt/rustwide/workdir/geneannot)
[INFO] [stderr]     Checking fsutils v0.1.0 (/opt/rustwide/workdir/fsutils)
[INFO] [stderr]     Checking pretty_env_logger v0.4.0
[INFO] [stderr]     Checking fastqutils v0.1.0 (/opt/rustwide/workdir/fastqutils)
[INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing
[INFO] [stdout]   --> geneannot/src/annotator/models/refgene.rs:77:34
[INFO] [stdout]    |
[INFO] [stdout] 77 | fn parse_transcript_line(record: &csv::StringRecord) -> Result<TranscriptLine, GeneAnnotError> {
[INFO] [stdout]    |                                  ^^^^^^^^^^^^^^^^^^            ^^^^^^^^^^^^^^ the same lifetime is hidden here
[INFO] [stdout]    |                                  |
[INFO] [stdout]    |                                  the lifetime is elided here
[INFO] [stdout]    |
[INFO] [stdout]    = help: the same lifetime is referred to in inconsistent ways, making the signature confusing
[INFO] [stdout]    = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default
[INFO] [stdout] help: use `'_` for type paths
[INFO] [stdout]    |
[INFO] [stdout] 77 | fn parse_transcript_line(record: &csv::StringRecord) -> Result<TranscriptLine<'_>, GeneAnnotError> {
[INFO] [stdout]    |                                                                              ++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Checking failure v0.1.8
[INFO] [stderr]     Checking bedutils v0.1.0 (/opt/rustwide/workdir/bedutils)
[INFO] [stderr]    Compiling libxlsxwriter-sys v1.1.7
[INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing
[INFO] [stdout]   --> geneannot/src/annotator/models/refgene.rs:77:34
[INFO] [stdout]    |
[INFO] [stdout] 77 | fn parse_transcript_line(record: &csv::StringRecord) -> Result<TranscriptLine, GeneAnnotError> {
[INFO] [stdout]    |                                  ^^^^^^^^^^^^^^^^^^            ^^^^^^^^^^^^^^ the same lifetime is hidden here
[INFO] [stdout]    |                                  |
[INFO] [stdout]    |                                  the lifetime is elided here
[INFO] [stdout]    |
[INFO] [stdout]    = help: the same lifetime is referred to in inconsistent ways, making the signature confusing
[INFO] [stdout]    = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default
[INFO] [stdout] help: use `'_` for type paths
[INFO] [stdout]    |
[INFO] [stdout] 77 | fn parse_transcript_line(record: &csv::StringRecord) -> Result<TranscriptLine<'_>, GeneAnnotError> {
[INFO] [stdout]    |                                                                              ++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Checking xlsxwriter v0.6.1
[INFO] [stderr]     Checking vcfutils v0.1.0 (/opt/rustwide/workdir/vcfutils)
[INFO] [stderr]     Checking rust-htslib v0.44.1
[INFO] [stderr]     Checking bamutils v0.1.0 (/opt/rustwide/workdir/bamutils)
[INFO] [stderr]     Checking bam2fastq v0.1.0 (/opt/rustwide/workdir/bam2fastq)
[INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing
[INFO] [stdout]    --> bam2fastq/src/commands/fastqcheck.rs:432:38
[INFO] [stdout]     |
[INFO] [stdout] 432 | fn parse_illumina_readname(readname: &str) -> anyhow::Result<IlluminaReadName> {
[INFO] [stdout]     |                                      ^^^^                    ^^^^^^^^^^^^^^^^ the same lifetime is hidden here
[INFO] [stdout]     |                                      |
[INFO] [stdout]     |                                      the lifetime is elided here
[INFO] [stdout]     |
[INFO] [stdout]     = help: the same lifetime is referred to in inconsistent ways, making the signature confusing
[INFO] [stdout]     = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default
[INFO] [stdout] help: use `'_` for type paths
[INFO] [stdout]     |
[INFO] [stdout] 432 | fn parse_illumina_readname(readname: &str) -> anyhow::Result<IlluminaReadName<'_>> {
[INFO] [stdout]     |                                                                              ++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing
[INFO] [stdout]    --> bam2fastq/src/commands/fastqcheck.rs:518:36
[INFO] [stdout]     |
[INFO] [stdout] 518 | fn parse_dnbseq_readname(readname: &str) -> anyhow::Result<DNBSeqReadName> {
[INFO] [stdout]     |                                    ^^^^                    ^^^^^^^^^^^^^^ the same lifetime is hidden here
[INFO] [stdout]     |                                    |
[INFO] [stdout]     |                                    the lifetime is elided here
[INFO] [stdout]     |
[INFO] [stdout]     = help: the same lifetime is referred to in inconsistent ways, making the signature confusing
[INFO] [stdout] help: use `'_` for type paths
[INFO] [stdout]     |
[INFO] [stdout] 518 | fn parse_dnbseq_readname(readname: &str) -> anyhow::Result<DNBSeqReadName<'_>> {
[INFO] [stdout]     |                                                                          ++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing
[INFO] [stdout]    --> bam2fastq/src/commands/fastqcheck.rs:432:38
[INFO] [stdout]     |
[INFO] [stdout] 432 | fn parse_illumina_readname(readname: &str) -> anyhow::Result<IlluminaReadName> {
[INFO] [stdout]     |                                      ^^^^                    ^^^^^^^^^^^^^^^^ the same lifetime is hidden here
[INFO] [stdout]     |                                      |
[INFO] [stdout]     |                                      the lifetime is elided here
[INFO] [stdout]     |
[INFO] [stdout]     = help: the same lifetime is referred to in inconsistent ways, making the signature confusing
[INFO] [stdout]     = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default
[INFO] [stdout] help: use `'_` for type paths
[INFO] [stdout]     |
[INFO] [stdout] 432 | fn parse_illumina_readname(readname: &str) -> anyhow::Result<IlluminaReadName<'_>> {
[INFO] [stdout]     |                                                                              ++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing
[INFO] [stdout]    --> bam2fastq/src/commands/fastqcheck.rs:518:36
[INFO] [stdout]     |
[INFO] [stdout] 518 | fn parse_dnbseq_readname(readname: &str) -> anyhow::Result<DNBSeqReadName> {
[INFO] [stdout]     |                                    ^^^^                    ^^^^^^^^^^^^^^ the same lifetime is hidden here
[INFO] [stdout]     |                                    |
[INFO] [stdout]     |                                    the lifetime is elided here
[INFO] [stdout]     |
[INFO] [stdout]     = help: the same lifetime is referred to in inconsistent ways, making the signature confusing
[INFO] [stdout] help: use `'_` for type paths
[INFO] [stdout]     |
[INFO] [stdout] 518 | fn parse_dnbseq_readname(readname: &str) -> anyhow::Result<DNBSeqReadName<'_>> {
[INFO] [stdout]     |                                                                          ++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 6m 36s
[INFO] running `Command { std: "docker" "inspect" "d44359eca43346f3208389f5fcc59953858dd0841fab5fece5e82c0c122ecc04", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d44359eca43346f3208389f5fcc59953858dd0841fab5fece5e82c0c122ecc04", kill_on_drop: false }`
[INFO] [stdout] d44359eca43346f3208389f5fcc59953858dd0841fab5fece5e82c0c122ecc04
