[INFO] cloning repository https://github.com/sc-zhang/BAM2CONS
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/sc-zhang/BAM2CONS" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsc-zhang%2FBAM2CONS", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsc-zhang%2FBAM2CONS'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 8bfd4ad8f3ce6b65df978c5dc1557cb6d621af76
[INFO] checking sc-zhang/BAM2CONS/8bfd4ad8f3ce6b65df978c5dc1557cb6d621af76 against master#31a9463c6e2794a59ce57a8f37abc6966afc2a58 for pr-149045
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsc-zhang%2FBAM2CONS" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/sc-zhang/BAM2CONS
[INFO] finished tweaking git repo https://github.com/sc-zhang/BAM2CONS
[INFO] tweaked toml for git repo https://github.com/sc-zhang/BAM2CONS written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/sc-zhang/BAM2CONS on toolchain 31a9463c6e2794a59ce57a8f37abc6966afc2a58
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+31a9463c6e2794a59ce57a8f37abc6966afc2a58" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/sc-zhang/BAM2CONS already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+31a9463c6e2794a59ce57a8f37abc6966afc2a58" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded quote v1.0.44
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded rust-htslib v0.46.0
[INFO] [stderr]   Downloaded semver v0.1.20
[INFO] [stderr]   Downloaded zmij v1.0.17
[INFO] [stderr]   Downloaded glob v0.3.3
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded derive-new v0.5.9
[INFO] [stderr]   Downloaded derive-new v0.6.0
[INFO] [stderr]   Downloaded cmake v0.1.57
[INFO] [stderr]   Downloaded ieee754 v0.2.6
[INFO] [stderr]   Downloaded linear-map v1.2.0
[INFO] [stderr]   Downloaded find-msvc-tools v0.1.8
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded cc v1.2.54
[INFO] [stderr]   Downloaded bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]   Downloaded lzma-sys v0.1.20
[INFO] [stderr]   Downloaded libc v0.2.180
[INFO] [stderr]   Downloaded libz-sys v1.1.23
[INFO] [stderr]   Downloaded curl-sys v0.4.85+curl-8.18.0
[INFO] [stderr]   Downloaded hts-sys v2.2.0
[INFO] [stderr]   Downloaded openssl-src v300.5.4+3.5.4
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+31a9463c6e2794a59ce57a8f37abc6966afc2a58" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] b4b9b04e3ee579458bd498a3f2110291904904a48e65bdec591f1cfb0016ddd7
[INFO] running `Command { std: "docker" "start" "-a" "b4b9b04e3ee579458bd498a3f2110291904904a48e65bdec591f1cfb0016ddd7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "b4b9b04e3ee579458bd498a3f2110291904904a48e65bdec591f1cfb0016ddd7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b4b9b04e3ee579458bd498a3f2110291904904a48e65bdec591f1cfb0016ddd7", kill_on_drop: false }`
[INFO] [stdout] b4b9b04e3ee579458bd498a3f2110291904904a48e65bdec591f1cfb0016ddd7
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+31a9463c6e2794a59ce57a8f37abc6966afc2a58" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 525440b3f57ef6696cc8f7e7aabd11607a64b84b7394f3c80685904ec15a3ad0
[INFO] running `Command { std: "docker" "start" "-a" "525440b3f57ef6696cc8f7e7aabd11607a64b84b7394f3c80685904ec15a3ad0", kill_on_drop: false }`
[INFO] [stderr]    Compiling quote v1.0.44
[INFO] [stderr]    Compiling unicode-ident v1.0.22
[INFO] [stderr]    Compiling libc v0.2.180
[INFO] [stderr]    Compiling find-msvc-tools v0.1.8
[INFO] [stderr]    Compiling pkg-config v0.3.32
[INFO] [stderr]     Checking litemap v0.8.1
[INFO] [stderr]     Checking writeable v0.6.2
[INFO] [stderr]    Compiling icu_properties_data v2.1.2
[INFO] [stderr]    Compiling icu_normalizer_data v2.1.1
[INFO] [stderr]     Checking smallvec v1.15.1
[INFO] [stderr]     Checking memchr v2.7.6
[INFO] [stderr]    Compiling crossbeam-utils v0.8.21
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling rustversion v1.0.22
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]     Checking lazy_static v1.5.0
[INFO] [stderr]    Compiling proc-macro2 v1.0.106
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]     Checking once_cell v1.21.3
[INFO] [stderr]    Compiling glob v0.3.3
[INFO] [stderr]     Checking regex-syntax v0.8.8
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]     Checking tracing-core v0.1.36
[INFO] [stderr]     Checking anstyle-parse v0.2.7
[INFO] [stderr]     Checking percent-encoding v2.3.2
[INFO] [stderr]     Checking colorchoice v1.0.4
[INFO] [stderr]     Checking anstyle v1.0.13
[INFO] [stderr]    Compiling rayon-core v1.13.0
[INFO] [stderr]    Compiling zmij v1.0.17
[INFO] [stderr]     Checking clap_lex v0.7.7
[INFO] [stderr]     Checking aho-corasick v1.1.4
[INFO] [stderr]     Checking form_urlencoded v1.2.2
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking either v1.15.0
[INFO] [stderr]    Compiling anyhow v1.0.100
[INFO] [stderr]     Checking log v0.4.29
[INFO] [stderr]     Checking thread_local v1.1.9
[INFO] [stderr]     Checking sharded-slab v0.1.7
[INFO] [stderr]     Checking anstream v0.6.21
[INFO] [stderr]     Checking itoa v1.0.17
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking pin-project-lite v0.2.16
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking nu-ansi-term v0.50.3
[INFO] [stderr]     Checking same-file v1.0.6
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking tracing-log v0.2.0
[INFO] [stderr]     Checking walkdir v2.5.0
[INFO] [stderr]     Checking itertools v0.13.0
[INFO] [stderr]     Checking clap_builder v4.5.54
[INFO] [stderr]     Checking crossbeam-epoch v0.9.18
[INFO] [stderr]     Checking serde_json v1.0.149
[INFO] [stderr]    Compiling syn v2.0.114
[INFO] [stderr]     Checking tracing-subscriber v0.3.22
[INFO] [stderr]    Compiling jobserver v0.1.34
[INFO] [stderr]     Checking crossbeam-deque v0.8.6
[INFO] [stderr]    Compiling cc v1.2.54
[INFO] [stderr]     Checking rayon v1.11.0
[INFO] [stderr]     Checking regex-automata v0.4.13
[INFO] [stderr]    Compiling openssl-src v300.5.4+3.5.4
[INFO] [stderr]    Compiling cmake v0.1.57
[INFO] [stderr]    Compiling openssl-sys v0.9.111
[INFO] [stderr]    Compiling libz-sys v1.1.23
[INFO] [stderr]    Compiling curl-sys v0.4.85+curl-8.18.0
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling hts-sys v2.2.0
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]     Checking regex v1.12.2
[INFO] [stderr]    Compiling synstructure v0.13.2
[INFO] [stderr]    Compiling zerofrom-derive v0.1.6
[INFO] [stderr]    Compiling yoke-derive v0.8.1
[INFO] [stderr]    Compiling zerovec-derive v0.11.2
[INFO] [stderr]    Compiling displaydoc v0.2.5
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling clap_derive v4.5.49
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling tracing-attributes v0.1.31
[INFO] [stderr]     Checking tracing v0.1.44
[INFO] [stderr]     Checking zerofrom v0.1.6
[INFO] [stderr]     Checking yoke v0.8.1
[INFO] [stderr]     Checking zerovec v0.11.5
[INFO] [stderr]     Checking zerotrie v0.2.3
[INFO] [stderr]     Checking clap v4.5.54
[INFO] [stderr]     Checking tinystr v0.8.2
[INFO] [stderr]     Checking potential_utf v0.1.4
[INFO] [stderr]     Checking icu_collections v2.1.1
[INFO] [stderr]     Checking icu_locale_core v2.1.1
[INFO] [stderr]     Checking bio-types v1.0.4
[INFO] [stderr]     Checking icu_provider v2.1.1
[INFO] [stderr]     Checking icu_normalizer v2.1.1
[INFO] [stderr]     Checking icu_properties v2.1.2
[INFO] [stderr]     Checking serde v1.0.228
[INFO] [stderr]     Checking idna_adapter v1.2.1
[INFO] [stderr]     Checking idna v1.1.0
[INFO] [stderr]     Checking url v2.5.8
[INFO] [stderr]     Checking rust-htslib v0.46.0
[INFO] [stderr]     Checking bam2cons v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 3m 04s
[INFO] running `Command { std: "docker" "inspect" "525440b3f57ef6696cc8f7e7aabd11607a64b84b7394f3c80685904ec15a3ad0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "525440b3f57ef6696cc8f7e7aabd11607a64b84b7394f3c80685904ec15a3ad0", kill_on_drop: false }`
[INFO] [stdout] 525440b3f57ef6696cc8f7e7aabd11607a64b84b7394f3c80685904ec15a3ad0
