[INFO] cloning repository https://github.com/AndreaGuarracino/lib_bpaf
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/AndreaGuarracino/lib_bpaf" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAndreaGuarracino%2Flib_bpaf", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAndreaGuarracino%2Flib_bpaf'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 1a8fbcc707d4b4203611b56a81f7fa25b4e069d1
[INFO] checking AndreaGuarracino/lib_bpaf against master#733108b6d4acaa93fe26ae281ea305aacd6aac4e for pr-148967
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAndreaGuarracino%2Flib_bpaf" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/AndreaGuarracino/lib_bpaf
[INFO] finished tweaking git repo https://github.com/AndreaGuarracino/lib_bpaf
[INFO] tweaked toml for git repo https://github.com/AndreaGuarracino/lib_bpaf written to /workspace/builds/worker-2-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/AndreaGuarracino/lib_bpaf on toolchain 733108b6d4acaa93fe26ae281ea305aacd6aac4e
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+733108b6d4acaa93fe26ae281ea305aacd6aac4e" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/AndreaGuarracino/lib_bpaf already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+733108b6d4acaa93fe26ae281ea305aacd6aac4e" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Updating git repository `https://github.com/AndreaGuarracino/lib_tracepoints`
[INFO] [stderr]     Updating git repository `https://github.com/AndreaGuarracino/lib_wfa2`
[INFO] [stderr]     Updating git submodule `https://github.com/smarco/WFA2-lib`
[INFO] [stderr]      Locking 7 packages to latest compatible versions
[INFO] [stderr]       Adding bytes v1.11.0
[INFO] [stderr]       Adding crossbeam-channel v0.5.15
[INFO] [stderr]       Adding crossbeam-utils v0.8.21
[INFO] [stderr]       Adding libz-rs-sys v0.5.2
[INFO] [stderr]       Adding noodles v0.100.0 (available: v0.102.0)
[INFO] [stderr]       Adding noodles-bgzf v0.42.0
[INFO] [stderr]       Adding zlib-rs v0.5.2
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded noodles-bgzf v0.42.0
[INFO] [stderr]   Downloaded env_filter v0.1.4
[INFO] [stderr]   Downloaded libz-rs-sys v0.5.2
[INFO] [stderr]   Downloaded noodles v0.100.0
[INFO] [stderr]   Downloaded zlib-rs v0.5.2
[INFO] [stderr]   Downloaded jiff-static v0.2.16
[INFO] [stderr]   Downloaded cc v1.2.45
[INFO] [stderr]   Downloaded jiff v0.2.16
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+733108b6d4acaa93fe26ae281ea305aacd6aac4e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] cef549571d23918dc7e5965a8e7990e969c08b645ddb6cb543a122053127a4a2
[INFO] running `Command { std: "docker" "start" "-a" "cef549571d23918dc7e5965a8e7990e969c08b645ddb6cb543a122053127a4a2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "cef549571d23918dc7e5965a8e7990e969c08b645ddb6cb543a122053127a4a2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "cef549571d23918dc7e5965a8e7990e969c08b645ddb6cb543a122053127a4a2", kill_on_drop: false }`
[INFO] [stdout] cef549571d23918dc7e5965a8e7990e969c08b645ddb6cb543a122053127a4a2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+733108b6d4acaa93fe26ae281ea305aacd6aac4e" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] f963e10ffcef256f6acf0640eb280d93e0099927bae06bd6520d9fbf9a9b6932
[INFO] running `Command { std: "docker" "start" "-a" "f963e10ffcef256f6acf0640eb280d93e0099927bae06bd6520d9fbf9a9b6932", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.177
[INFO] [stderr]    Compiling find-msvc-tools v0.1.4
[INFO] [stderr]     Checking regex-syntax v0.8.8
[INFO] [stderr]     Checking aho-corasick v1.1.4
[INFO] [stderr]     Checking zlib-rs v0.5.2
[INFO] [stderr]     Checking simd-adler32 v0.3.7
[INFO] [stderr]    Compiling lib_wfa2 v0.1.0 (https://github.com/AndreaGuarracino/lib_wfa2#ecfb9d8d)
[INFO] [stderr]     Checking anstyle-query v1.1.4
[INFO] [stderr]     Checking is_terminal_polyfill v1.70.2
[INFO] [stderr]     Checking miniz_oxide v0.8.9
[INFO] [stderr]     Checking anstyle v1.0.13
[INFO] [stderr]     Checking log v0.4.28
[INFO] [stderr]     Checking jiff v0.2.16
[INFO] [stderr]     Checking anstream v0.6.21
[INFO] [stderr] error: failed to run custom build command for `lib_wfa2 v0.1.0 (https://github.com/AndreaGuarracino/lib_wfa2#ecfb9d8d)`
[INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation.
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/lib_wfa2-3b99c5cd7cf8bf66/build-script-build` (exit status: 101)
[INFO] [stderr]   --- stderr
[INFO] [stderr] 
[INFO] [stderr]   thread 'main' (110) panicked at /opt/rustwide/cargo-home/git/checkouts/lib_wfa2-9e554f8770e7b94e/ecfb9d8/build.rs:177:9:
[INFO] [stderr]   Failed to build WFA2-lib: Make failed:
[INFO] [stderr]   STDOUT:
[INFO] [stderr]   rm -rf bin build lib 2> /dev/null
[INFO] [stderr]   make --directory=tools/align_benchmark clean
[INFO] [stderr]   make[1]: Entering directory '/opt/rustwide/cargo-home/git/checkouts/lib_wfa2-9e554f8770e7b94e/ecfb9d8/WFA2-lib/tools/align_benchmark'
[INFO] [stderr]   rm -rf ./build
[INFO] [stderr]   make[1]: Leaving directory '/opt/rustwide/cargo-home/git/checkouts/lib_wfa2-9e554f8770e7b94e/ecfb9d8/WFA2-lib/tools/align_benchmark'
[INFO] [stderr]   make --directory=examples clean
[INFO] [stderr]   make[1]: Entering directory '/opt/rustwide/cargo-home/git/checkouts/lib_wfa2-9e554f8770e7b94e/ecfb9d8/WFA2-lib/examples'
[INFO] [stderr]   rm -rf bin
[INFO] [stderr]   make[1]: Leaving directory '/opt/rustwide/cargo-home/git/checkouts/lib_wfa2-9e554f8770e7b94e/ecfb9d8/WFA2-lib/examples'
[INFO] [stderr]   rm -rf tests/*.alg tests/*.log* 2> /dev/null
[INFO] [stderr] 
[INFO] [stderr]   STDERR:
[INFO] [stderr]   mkdir: cannot create directory 'bin': Read-only file system
[INFO] [stderr]   mkdir: cannot create directory 'build': Read-only file system
[INFO] [stderr]   mkdir: cannot create directory 'build': Read-only file system
[INFO] [stderr]   mkdir: cannot create directory 'lib': Read-only file system
[INFO] [stderr]   make: *** [Makefile:70: setup] Error 1
[INFO] [stderr] 
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x56fee40a3ff2 - std::backtrace_rs::backtrace::libunwind::trace::h336fa6cbda11d7da
[INFO] [stderr]                                  at /rustc/733108b6d4acaa93fe26ae281ea305aacd6aac4e/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9
[INFO] [stderr]      1:     0x56fee40a3ff2 - std::backtrace_rs::backtrace::trace_unsynchronized::hdd3caca2f7bc912d
[INFO] [stderr]                                  at /rustc/733108b6d4acaa93fe26ae281ea305aacd6aac4e/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14
[INFO] [stderr]      2:     0x56fee40a3ff2 - std::sys::backtrace::_print_fmt::hd331b0c9511a99ae
[INFO] [stderr]                                  at /rustc/733108b6d4acaa93fe26ae281ea305aacd6aac4e/library/std/src/sys/backtrace.rs:66:9
[INFO] [stderr]      3:     0x56fee40a3ff2 - <std::sys::backtrace::BacktraceLock::print::DisplayBacktrace as core::fmt::Display>::fmt::h1994e61875dd2f2a
[INFO] [stderr]                                  at /rustc/733108b6d4acaa93fe26ae281ea305aacd6aac4e/library/std/src/sys/backtrace.rs:39:26
[INFO] [stderr]      4:     0x56fee40b3257 - core::fmt::rt::Argument::fmt::hb884d9236ffe22a5
[INFO] [stderr]                                  at /rustc/733108b6d4acaa93fe26ae281ea305aacd6aac4e/library/core/src/fmt/rt.rs:152:76
[INFO] [stderr]      5:     0x56fee40b3257 - core::fmt::write::h94ae3adc0037c305
[INFO] [stderr]      6:     0x56fee4079686 - std::io::default_write_fmt::h338733cd46b32ee7
[INFO] [stderr]                                  at /rustc/733108b6d4acaa93fe26ae281ea305aacd6aac4e/library/std/src/io/mod.rs:639:11
[INFO] [stderr]      7:     0x56fee4079686 - std::io::Write::write_fmt::hf145160a44bf8905
[INFO] [stderr]                                  at /rustc/733108b6d4acaa93fe26ae281ea305aacd6aac4e/library/std/src/io/mod.rs:1994:13
[INFO] [stderr]      8:     0x56fee40847d1 - std::sys::backtrace::BacktraceLock::print::hc709f40974e386fc
[INFO] [stderr]                                  at /rustc/733108b6d4acaa93fe26ae281ea305aacd6aac4e/library/std/src/sys/backtrace.rs:42:9
[INFO] [stderr]      9:     0x56fee40847d1 - std::panicking::default_hook::{{closure}}::h97869b26213cfdd1
[INFO] [stderr]                                  at /rustc/733108b6d4acaa93fe26ae281ea305aacd6aac4e/library/std/src/panicking.rs:293:27
[INFO] [stderr]     10:     0x56fee40845f6 - std::panicking::default_hook::h12325a7204458032
[INFO] [stderr]                                  at /rustc/733108b6d4acaa93fe26ae281ea305aacd6aac4e/library/std/src/panicking.rs:320:9
[INFO] [stderr]     11:     0x56fee4084cdb - std::panicking::panic_with_hook::h43cbe56cc59fc5e6
[INFO] [stderr]                                  at /rustc/733108b6d4acaa93fe26ae281ea305aacd6aac4e/library/std/src/panicking.rs:826:13
[INFO] [stderr]     12:     0x56fee4084b58 - std::panicking::panic_handler::{{closure}}::h026d7e278a1a94d3
[INFO] [stderr]                                  at /rustc/733108b6d4acaa93fe26ae281ea305aacd6aac4e/library/std/src/panicking.rs:699:13
[INFO] [stderr]     13:     0x56fee4082dd9 - std::sys::backtrace::__rust_end_short_backtrace::h61696f1ef97ec08d
[INFO] [stderr]                                  at /rustc/733108b6d4acaa93fe26ae281ea305aacd6aac4e/library/std/src/sys/backtrace.rs:174:18
[INFO] [stderr]     14:     0x56fee406e10d - __rustc[9da61800b7c1d17]::rust_begin_unwind
[INFO] [stderr]                                  at /rustc/733108b6d4acaa93fe26ae281ea305aacd6aac4e/library/std/src/panicking.rs:690:5
[INFO] [stderr]     15:     0x56fee40b63ac - core::panicking::panic_fmt::h376ce795c5298f0d
[INFO] [stderr]                                  at /rustc/733108b6d4acaa93fe26ae281ea305aacd6aac4e/library/core/src/panicking.rs:80:14
[INFO] [stderr]     16:     0x56fee4069569 - build_script_build::main::hdd46b0674ee6bb48
[INFO] [stderr]     17:     0x56fee406b773 - core::ops::function::FnOnce::call_once::h358a445a085b39fd
[INFO] [stderr]     18:     0x56fee40638a6 - std::sys::backtrace::__rust_begin_short_backtrace::h700135226d60cb60
[INFO] [stderr]     19:     0x56fee406acb9 - std::rt::lang_start::{{closure}}::h31a3751f4e30cc03
[INFO] [stderr]     20:     0x56fee407ac8a - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::h17171ace6974aa8f
[INFO] [stderr]                                  at /rustc/733108b6d4acaa93fe26ae281ea305aacd6aac4e/library/core/src/ops/function.rs:287:21
[INFO] [stderr]     21:     0x56fee407ac8a - std::panicking::catch_unwind::do_call::h7f6df566c2bad775
[INFO] [stderr]                                  at /rustc/733108b6d4acaa93fe26ae281ea305aacd6aac4e/library/std/src/panicking.rs:582:40
[INFO] [stderr]     22:     0x56fee407ac8a - std::panicking::catch_unwind::hb99c8ff3052425d2
[INFO] [stderr]                                  at /rustc/733108b6d4acaa93fe26ae281ea305aacd6aac4e/library/std/src/panicking.rs:545:19
[INFO] [stderr]     23:     0x56fee407ac8a - std::panic::catch_unwind::h227a70d8d07d79e6
[INFO] [stderr]                                  at /rustc/733108b6d4acaa93fe26ae281ea305aacd6aac4e/library/std/src/panic.rs:359:14
[INFO] [stderr]     24:     0x56fee407ac8a - std::rt::lang_start_internal::{{closure}}::hb92f0c824b843011
[INFO] [stderr]                                  at /rustc/733108b6d4acaa93fe26ae281ea305aacd6aac4e/library/std/src/rt.rs:175:24
[INFO] [stderr]     25:     0x56fee407ac8a - std::panicking::catch_unwind::do_call::h837acadf86977c09
[INFO] [stderr]                                  at /rustc/733108b6d4acaa93fe26ae281ea305aacd6aac4e/library/std/src/panicking.rs:582:40
[INFO] [stderr]     26:     0x56fee407ac8a - std::panicking::catch_unwind::hfffc6b58fde015bc
[INFO] [stderr]                                  at /rustc/733108b6d4acaa93fe26ae281ea305aacd6aac4e/library/std/src/panicking.rs:545:19
[INFO] [stderr]     27:     0x56fee407ac8a - std::panic::catch_unwind::he0f0d9ab4801dcd5
[INFO] [stderr]                                  at /rustc/733108b6d4acaa93fe26ae281ea305aacd6aac4e/library/std/src/panic.rs:359:14
[INFO] [stderr]     28:     0x56fee407ac8a - std::rt::lang_start_internal::h6df14bee4fb30353
[INFO] [stderr]                                  at /rustc/733108b6d4acaa93fe26ae281ea305aacd6aac4e/library/std/src/rt.rs:171:5
[INFO] [stderr]     29:     0x56fee406aca1 - std::rt::lang_start::h593069b1b23ae67d
[INFO] [stderr]     30:     0x56fee406dde5 - main
[INFO] [stderr]     31:     0x74bf2b9d91ca - <unknown>
[INFO] [stderr]     32:     0x74bf2b9d928b - __libc_start_main
[INFO] [stderr]     33:     0x56fee4063085 - _start
[INFO] [stderr]     34:                0x0 - <unknown>
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] running `Command { std: "docker" "inspect" "f963e10ffcef256f6acf0640eb280d93e0099927bae06bd6520d9fbf9a9b6932", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f963e10ffcef256f6acf0640eb280d93e0099927bae06bd6520d9fbf9a9b6932", kill_on_drop: false }`
[INFO] [stdout] f963e10ffcef256f6acf0640eb280d93e0099927bae06bd6520d9fbf9a9b6932
