[INFO] cloning repository https://github.com/edg1983/saige-qtl-rust [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/edg1983/saige-qtl-rust" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fedg1983%2Fsaige-qtl-rust", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fedg1983%2Fsaige-qtl-rust'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] da1ea4d8b2cc5cfac106d59a9417a7afbde07c56 [INFO] checking edg1983/saige-qtl-rust against try#943e2200e35c3825486c4671b6cab0107a07f8c1 for pr-148952 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fedg1983%2Fsaige-qtl-rust" "/workspace/builds/worker-7-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-7-tc2/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/edg1983/saige-qtl-rust [INFO] finished tweaking git repo https://github.com/edg1983/saige-qtl-rust [INFO] tweaked toml for git repo https://github.com/edg1983/saige-qtl-rust written to /workspace/builds/worker-7-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/edg1983/saige-qtl-rust on toolchain 943e2200e35c3825486c4671b6cab0107a07f8c1 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+943e2200e35c3825486c4671b6cab0107a07f8c1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/edg1983/saige-qtl-rust already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+943e2200e35c3825486c4671b6cab0107a07f8c1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+943e2200e35c3825486c4671b6cab0107a07f8c1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 373eef621d6fe6fb9344b8679ec1912ee4c2d8d32ec557e4eefd174c4747d2c6 [INFO] running `Command { std: "docker" "start" "-a" "373eef621d6fe6fb9344b8679ec1912ee4c2d8d32ec557e4eefd174c4747d2c6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "373eef621d6fe6fb9344b8679ec1912ee4c2d8d32ec557e4eefd174c4747d2c6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "373eef621d6fe6fb9344b8679ec1912ee4c2d8d32ec557e4eefd174c4747d2c6", kill_on_drop: false }` [INFO] [stdout] 373eef621d6fe6fb9344b8679ec1912ee4c2d8d32ec557e4eefd174c4747d2c6 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+943e2200e35c3825486c4671b6cab0107a07f8c1" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 2c8b09e5f29e19eb15a264d494ce8acb8d23f1b8b6100b400e3e919a048389c0 [INFO] running `Command { std: "docker" "start" "-a" "2c8b09e5f29e19eb15a264d494ce8acb8d23f1b8b6100b400e3e919a048389c0", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.103 [INFO] [stderr] Compiling quote v1.0.42 [INFO] [stderr] Compiling libm v0.2.15 [INFO] [stderr] Compiling serde_core v1.0.228 [INFO] [stderr] Compiling serde v1.0.228 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling rayon-core v1.13.0 [INFO] [stderr] Checking either v1.15.0 [INFO] [stderr] Checking smallvec v1.15.1 [INFO] [stderr] Compiling cc v1.2.45 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Compiling object v0.32.2 [INFO] [stderr] Checking regex v1.12.2 [INFO] [stderr] Compiling target-features v0.1.6 [INFO] [stderr] Checking bitflags v2.10.0 [INFO] [stderr] Checking array-init-cursor v0.2.1 [INFO] [stderr] Compiling target-lexicon v0.12.16 [INFO] [stderr] Checking planus v0.3.1 [INFO] [stderr] Checking cblas-sys v0.1.4 [INFO] [stderr] Compiling smartstring v1.0.1 [INFO] [stderr] Checking parking_lot_core v0.9.12 [INFO] [stderr] Compiling polars-utils v0.41.3 [INFO] [stderr] Checking simdutf8 v0.1.5 [INFO] [stderr] Checking iana-time-zone v0.1.64 [INFO] [stderr] Checking parking_lot v0.12.5 [INFO] [stderr] Checking raw-cpuid v11.6.0 [INFO] [stderr] Compiling polars-arrow v0.41.3 [INFO] [stderr] Checking foreign_vec v0.1.0 [INFO] [stderr] Checking dyn-clone v1.0.20 [INFO] [stderr] Checking streaming-iterator v0.1.9 [INFO] [stderr] Checking fast-float v0.2.0 [INFO] [stderr] Compiling rustix v1.1.2 [INFO] [stderr] Checking strength_reduce v0.2.4 [INFO] [stderr] Checking atoi_simd v0.15.6 [INFO] [stderr] Checking ethnum v1.5.2 [INFO] [stderr] Checking rayon v1.11.0 [INFO] [stderr] Compiling polars-compute v0.41.3 [INFO] [stderr] Compiling zeroize v1.8.2 [INFO] [stderr] Compiling openssl v0.10.75 [INFO] [stderr] Compiling pyo3-build-config v0.20.3 [INFO] [stderr] Checking linux-raw-sys v0.11.0 [INFO] [stderr] Compiling litrs v1.0.0 [INFO] [stderr] Compiling syn v2.0.110 [INFO] [stderr] Compiling foreign-types-shared v0.1.1 [INFO] [stderr] Compiling httparse v1.10.1 [INFO] [stderr] Compiling foreign-types v0.3.2 [INFO] [stderr] Compiling base64ct v1.8.0 [INFO] [stderr] Compiling log v0.4.28 [INFO] [stderr] Compiling bytes v1.10.1 [INFO] [stderr] Compiling rustls-pki-types v1.13.0 [INFO] [stderr] Compiling document-features v0.2.12 [INFO] [stderr] Compiling pem-rfc7468 v0.7.0 [INFO] [stderr] Compiling stacker v0.1.22 [INFO] [stderr] Compiling openssl-sys v0.9.111 [INFO] [stderr] Compiling polars-core v0.41.3 [INFO] [stderr] Compiling adler2 v2.0.1 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking approx v0.4.0 [INFO] [stderr] Checking chrono v0.4.42 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Checking unicode-width v0.2.2 [INFO] [stderr] Compiling native-tls v0.2.14 [INFO] [stderr] Compiling openssl-probe v0.1.6 [INFO] [stderr] Compiling simd-adler32 v0.3.7 [INFO] [stderr] Compiling der v0.7.10 [INFO] [stderr] Checking crossterm v0.29.0 [INFO] [stderr] Compiling miniz_oxide v0.8.9 [INFO] [stderr] Compiling webpki-root-certs v1.0.4 [INFO] [stderr] Compiling crc32fast v1.5.0 [INFO] [stderr] Compiling filetime v0.2.26 [INFO] [stderr] Compiling http v1.3.1 [INFO] [stderr] Checking comfy-table v7.2.1 [INFO] [stderr] Compiling polars-ops v0.41.3 [INFO] [stderr] Compiling utf-8 v0.7.6 [INFO] [stderr] Checking xxhash-rust v0.8.15 [INFO] [stderr] Compiling glob v0.3.3 [INFO] [stderr] Compiling option-ext v0.2.0 [INFO] [stderr] Compiling percent-encoding v2.3.2 [INFO] [stderr] Compiling dirs-sys v0.5.0 [INFO] [stderr] Compiling flate2 v1.1.5 [INFO] [stderr] Checking argminmax v0.6.3 [INFO] [stderr] Compiling xattr v1.6.1 [INFO] [stderr] Compiling ring v0.17.14 [INFO] [stderr] Compiling cmake v0.1.54 [INFO] [stderr] Compiling clang-sys v1.8.1 [INFO] [stderr] Compiling tar v0.4.44 [INFO] [stderr] Compiling openssl-src v300.5.4+3.5.4 [INFO] [stderr] Compiling ureq-proto v0.5.2 [INFO] [stderr] Compiling libz-sys v1.1.23 [INFO] [stderr] Compiling dirs v6.0.0 [INFO] [stderr] Checking now v0.1.3 [INFO] [stderr] Checking atoi v2.0.0 [INFO] [stderr] Compiling regex-syntax v0.8.8 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling nom v7.1.3 [INFO] [stderr] Compiling pest v2.8.3 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling pyo3-ffi v0.20.3 [INFO] [stderr] Compiling libloading v0.8.9 [INFO] [stderr] Checking memmap2 v0.7.1 [INFO] [stderr] Compiling polars-plan v0.41.3 [INFO] [stderr] Compiling bindgen v0.69.5 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Checking home v0.5.12 [INFO] [stderr] Compiling bzip2-sys v0.1.13+1.0.8 [INFO] [stderr] Compiling ar_archive_writer v0.2.0 [INFO] [stderr] Compiling itertools v0.12.1 [INFO] [stderr] Compiling curl-sys v0.4.84+curl-8.17.0 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Checking form_urlencoded v1.2.2 [INFO] [stderr] Compiling ndarray v0.16.1 [INFO] [stderr] Checking rand_core v0.9.3 [INFO] [stderr] Compiling portable-atomic v1.11.1 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Checking crypto-common v0.1.6 [INFO] [stderr] Compiling synstructure v0.13.2 [INFO] [stderr] Compiling pest_meta v2.8.3 [INFO] [stderr] Compiling pyo3-macros-backend v0.20.3 [INFO] [stderr] Compiling psm v0.1.28 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Checking webpki-roots v1.0.4 [INFO] [stderr] Compiling pyo3 v0.20.3 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Checking lapack-sys v0.14.0 [INFO] [stderr] Compiling darling_core v0.14.4 [INFO] [stderr] Compiling regex-automata v0.4.13 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Compiling pest_generator v2.8.3 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Checking anstyle v1.0.13 [INFO] [stderr] Checking subtle v2.6.1 [INFO] [stderr] Compiling cexpr v0.6.0 [INFO] [stderr] Checking anstyle-query v1.1.4 [INFO] [stderr] Checking is_terminal_polyfill v1.70.2 [INFO] [stderr] Checking anstream v0.6.21 [INFO] [stderr] Compiling rustls v0.23.35 [INFO] [stderr] Checking webpki-roots v0.26.11 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking digest v0.10.7 [INFO] [stderr] Checking rand_chacha v0.9.0 [INFO] [stderr] Checking num-bigint v0.4.6 [INFO] [stderr] Checking num-rational v0.4.2 [INFO] [stderr] Checking crossbeam-channel v0.5.15 [INFO] [stderr] Checking num_cpus v1.17.0 [INFO] [stderr] Checking dirs-sys v0.3.7 [INFO] [stderr] Compiling polars-lazy v0.41.3 [INFO] [stderr] Compiling indoc v2.0.7 [INFO] [stderr] Checking unindent v0.2.4 [INFO] [stderr] Compiling serde_derive v1.0.228 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling bytemuck_derive v1.10.2 [INFO] [stderr] Compiling zerofrom-derive v0.1.6 [INFO] [stderr] Compiling yoke-derive v0.8.1 [INFO] [stderr] Compiling zerovec-derive v0.11.2 [INFO] [stderr] Compiling multiversion-macros v0.7.4 [INFO] [stderr] Compiling displaydoc v0.2.5 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling thiserror-impl v2.0.17 [INFO] [stderr] Compiling openssl-macros v0.1.1 [INFO] [stderr] Compiling recursive-proc-macro-impl v0.1.1 [INFO] [stderr] Checking bytemuck v1.24.0 [INFO] [stderr] Checking recursive v0.1.1 [INFO] [stderr] Compiling darling_macro v0.14.4 [INFO] [stderr] Checking rustls-webpki v0.103.8 [INFO] [stderr] Compiling katexit v0.1.5 [INFO] [stderr] Compiling pyo3-macros v0.20.3 [INFO] [stderr] Checking safe_arch v0.7.4 [INFO] [stderr] Checking thiserror v1.0.69 [INFO] [stderr] Compiling darling v0.14.4 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Compiling pest_derive v2.8.3 [INFO] [stderr] Compiling derive_builder_core v0.12.0 [INFO] [stderr] Checking streaming-decompression v0.1.2 [INFO] [stderr] Checking crossbeam v0.8.4 [INFO] [stderr] Checking wide v0.7.33 [INFO] [stderr] Compiling ctor v0.1.26 [INFO] [stderr] Checking multiversion v0.7.4 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Checking dirs-sys v0.4.1 [INFO] [stderr] Checking sha2 v0.10.9 [INFO] [stderr] Checking directories v4.0.1 [INFO] [stderr] Checking zerofrom v0.1.6 [INFO] [stderr] Compiling thiserror v2.0.17 [INFO] [stderr] Checking yoke v0.8.1 [INFO] [stderr] Checking rand v0.9.2 [INFO] [stderr] Compiling bed-reader v0.2.37 [INFO] [stderr] Checking approx v0.3.2 [INFO] [stderr] Checking anyhow v1.0.100 [INFO] [stderr] Checking zerovec v0.11.5 [INFO] [stderr] Checking zerotrie v0.2.3 [INFO] [stderr] Compiling polars v0.41.3 [INFO] [stderr] Checking clap_lex v0.7.6 [INFO] [stderr] Compiling strum v0.26.3 [INFO] [stderr] Checking temp_testdir v0.2.3 [INFO] [stderr] Checking parquet-format-safe v0.2.4 [INFO] [stderr] Compiling anyinput-core v0.1.8 [INFO] [stderr] Checking base16ct v0.1.1 [INFO] [stderr] Checking clap_builder v4.5.51 [INFO] [stderr] Checking alga v0.9.3 [INFO] [stderr] Checking bio-types v1.0.4 [INFO] [stderr] Compiling derive_builder_macro v0.12.0 [INFO] [stderr] Checking directories v5.0.1 [INFO] [stderr] Checking dpc-pariter v0.4.0 [INFO] [stderr] Compiling derive-new v0.7.0 [INFO] [stderr] Checking tinystr v0.8.2 [INFO] [stderr] Checking potential_utf v0.1.4 [INFO] [stderr] Compiling ctor v0.2.9 [INFO] [stderr] Checking icu_collections v2.1.1 [INFO] [stderr] Checking derive_builder v0.12.0 [INFO] [stderr] Compiling clap_derive v4.5.49 [INFO] [stderr] Checking rand_xoshiro v0.7.0 [INFO] [stderr] Checking icu_locale_core v2.1.1 [INFO] [stderr] Checking env_filter v0.1.4 [INFO] [stderr] Checking csv-core v0.1.13 [INFO] [stderr] Checking linear-map v1.2.0 [INFO] [stderr] Compiling anyinput-derive v0.1.8 [INFO] [stderr] Checking ieee754 v0.2.6 [INFO] [stderr] Checking jiff v0.2.16 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking icu_provider v2.1.1 [INFO] [stderr] Checking csv v1.4.0 [INFO] [stderr] Checking anyinput v0.1.8 [INFO] [stderr] Checking icu_normalizer v2.1.1 [INFO] [stderr] Checking icu_properties v2.1.1 [INFO] [stderr] Checking clap v4.5.51 [INFO] [stderr] Compiling ureq v3.1.4 [INFO] [stderr] Checking polars-arrow-format v0.1.0 [INFO] [stderr] Checking hashbrown v0.14.5 [INFO] [stderr] Checking bincode v1.3.3 [INFO] [stderr] Checking idna_adapter v1.2.1 [INFO] [stderr] Checking idna v1.1.0 [INFO] [stderr] Checking url v2.5.7 [INFO] [stderr] Checking ndarray v0.15.6 [INFO] [stderr] Checking cauchy v0.4.0 [INFO] [stderr] Checking simba v0.6.0 [INFO] [stderr] Checking py_literal v0.4.0 [INFO] [stderr] Checking ndarray v0.17.1 [INFO] [stderr] Compiling hts-sys v2.2.0 [INFO] [stderr] Checking ureq v2.12.1 [INFO] [stderr] Checking fetch-data v0.1.6 [INFO] [stderr] Compiling openblas-build v0.10.13 [INFO] [stderr] Compiling openblas-src v0.10.13 [INFO] [stderr] Checking polars-error v0.41.3 [INFO] [stderr] Checking lax v0.16.0 [INFO] [stderr] Checking env_logger v0.11.8 [INFO] [stderr] Checking ndarray-linalg v0.16.0 [INFO] [stderr] Checking numpy v0.20.0 [INFO] [stderr] Checking ndarray-npy v0.8.1 [INFO] [stderr] Checking sprs v0.11.4 [INFO] [stderr] Checking argmin-math v0.5.1 [INFO] [stderr] Checking nalgebra v0.29.0 [INFO] [stderr] Checking argmin v0.11.0 [INFO] [stderr] Checking polars-row v0.41.3 [INFO] [stderr] Checking polars-parquet v0.41.3 [INFO] [stderr] Checking statrs v0.16.1 [INFO] [stderr] Checking polars-time v0.41.3 [INFO] [stderr] Checking polars-io v0.41.3 [INFO] [stderr] Checking polars-expr v0.41.3 [INFO] [stderr] Checking polars-mem-engine v0.41.3 [INFO] [stderr] Checking rust-htslib v0.51.0 [INFO] [stderr] Checking saige-qtl-rust v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 4m 05s [INFO] running `Command { std: "docker" "inspect" "2c8b09e5f29e19eb15a264d494ce8acb8d23f1b8b6100b400e3e919a048389c0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2c8b09e5f29e19eb15a264d494ce8acb8d23f1b8b6100b400e3e919a048389c0", kill_on_drop: false }` [INFO] [stdout] 2c8b09e5f29e19eb15a264d494ce8acb8d23f1b8b6100b400e3e919a048389c0