[INFO] fetching crate deepbiop-fa 0.1.16...
[INFO] checking deepbiop-fa-0.1.16 against master#42f4793e5a514858221b07ac379029d90353913e for pr-148952
[INFO] extracting crate deepbiop-fa 0.1.16 into /workspace/builds/worker-3-tc1/source
[INFO] started tweaking crates.io crate deepbiop-fa 0.1.16
[INFO] finished tweaking crates.io crate deepbiop-fa 0.1.16
[INFO] tweaked toml for crates.io crate deepbiop-fa 0.1.16 written to /workspace/builds/worker-3-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate deepbiop-fa 0.1.16 on toolchain 42f4793e5a514858221b07ac379029d90353913e
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+42f4793e5a514858221b07ac379029d90353913e" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate deepbiop-fa 0.1.16 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+42f4793e5a514858221b07ac379029d90353913e" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded is-macro v0.3.7
[INFO] [stderr]   Downloaded unicode_names2_generator v1.3.0
[INFO] [stderr]   Downloaded pyo3-stub-gen v0.17.0
[INFO] [stderr]   Downloaded rustpython-parser-core v0.4.0
[INFO] [stderr]   Downloaded noodles-fastq v0.21.0
[INFO] [stderr]   Downloaded noodles-fasta v0.56.0
[INFO] [stderr]   Downloaded arrow-arith v57.0.0
[INFO] [stderr]   Downloaded noodles-csi v0.51.0
[INFO] [stderr]   Downloaded float8 v0.4.2
[INFO] [stderr]   Downloaded derefable v0.1.0
[INFO] [stderr]   Downloaded dyn-stack v0.13.2
[INFO] [stderr]   Downloaded arrow-csv v57.0.0
[INFO] [stderr]   Downloaded arrow-row v57.0.0
[INFO] [stderr]   Downloaded ug v0.5.0
[INFO] [stderr]   Downloaded arrow-buffer v57.0.0
[INFO] [stderr]   Downloaded arrow-data v57.0.0
[INFO] [stderr]   Downloaded parquet v57.0.0
[INFO] [stderr]   Downloaded noodles-bam v0.83.0
[INFO] [stderr]   Downloaded arrow-select v57.0.0
[INFO] [stderr]   Downloaded malachite-base v0.4.22
[INFO] [stderr]   Downloaded pyo3-macros-backend v0.27.1
[INFO] [stderr]   Downloaded candle-core v0.9.2-alpha.1
[INFO] [stderr]   Downloaded malachite-bigint v0.2.3
[INFO] [stderr]   Downloaded arrow-ord v57.0.0
[INFO] [stderr]   Downloaded arrow-string v57.0.0
[INFO] [stderr]   Downloaded noodles v0.101.0
[INFO] [stderr]   Downloaded arrow-schema v57.0.0
[INFO] [stderr]   Downloaded arrow v57.0.0
[INFO] [stderr]   Downloaded deepbiop-utils v0.1.16
[INFO] [stderr]   Downloaded pyo3-ffi v0.27.1
[INFO] [stderr]   Downloaded malachite v0.4.22
[INFO] [stderr]   Downloaded arrow-ipc v57.0.0
[INFO] [stderr]   Downloaded arrow-cast v57.0.0
[INFO] [stderr]   Downloaded malachite-q v0.4.22
[INFO] [stderr]   Downloaded bio v3.0.0
[INFO] [stderr]   Downloaded arrow-json v57.0.0
[INFO] [stderr]   Downloaded noodles-sam v0.79.0
[INFO] [stderr]   Downloaded dyn-stack-macros v0.1.3
[INFO] [stderr]   Downloaded buffer-redux v1.0.2
[INFO] [stderr]   Downloaded flatbuffers v25.9.23
[INFO] [stderr]   Downloaded target-lexicon v0.13.3
[INFO] [stderr]   Downloaded pyo3-build-config v0.27.1
[INFO] [stderr]   Downloaded pyo3-macros v0.27.1
[INFO] [stderr]   Downloaded malachite-nz v0.4.22
[INFO] [stderr]   Downloaded rustpython-ast v0.4.0
[INFO] [stderr]   Downloaded unicode_names2 v1.3.0
[INFO] [stderr]   Downloaded noodles-core v0.18.0
[INFO] [stderr]   Downloaded numpy v0.27.0
[INFO] [stderr]   Downloaded rustpython-parser v0.4.0
[INFO] [stderr]   Downloaded pyo3-stub-gen-derive v0.17.0
[INFO] [stderr]   Downloaded needletail v0.5.1
[INFO] [stderr]   Downloaded rustpython-parser-vendored v0.4.0
[INFO] [stderr]   Downloaded noodles-bgzf v0.43.0
[INFO] [stderr]   Downloaded unic-ucd-ident v0.9.0
[INFO] [stderr]   Downloaded pyo3 v0.27.1
[INFO] [stderr]   Downloaded arrow-array v57.0.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+42f4793e5a514858221b07ac379029d90353913e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 2659f072e7dbd69febeb85e503097860de5727358af63c06d19d2e07508be9ed
[INFO] running `Command { std: "docker" "start" "-a" "2659f072e7dbd69febeb85e503097860de5727358af63c06d19d2e07508be9ed", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "2659f072e7dbd69febeb85e503097860de5727358af63c06d19d2e07508be9ed", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2659f072e7dbd69febeb85e503097860de5727358af63c06d19d2e07508be9ed", kill_on_drop: false }`
[INFO] [stdout] 2659f072e7dbd69febeb85e503097860de5727358af63c06d19d2e07508be9ed
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+42f4793e5a514858221b07ac379029d90353913e" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] ba7b2a048907695e4e8fa23ddf4d518a86d27e375139d77796a3431e3f4759c8
[INFO] running `Command { std: "docker" "start" "-a" "ba7b2a048907695e4e8fa23ddf4d518a86d27e375139d77796a3431e3f4759c8", kill_on_drop: false }`
[INFO] [stderr]    Compiling bytemuck_derive v1.10.2
[INFO] [stderr]    Compiling zerocopy-derive v0.8.27
[INFO] [stderr]    Compiling serde_core v1.0.228
[INFO] [stderr]    Compiling zerocopy v0.8.27
[INFO] [stderr]     Checking num-bigint v0.4.6
[INFO] [stderr]    Compiling target-lexicon v0.13.3
[INFO] [stderr]     Checking aho-corasick v1.1.4
[INFO] [stderr]    Compiling getrandom v0.2.16
[INFO] [stderr]     Checking lexical-util v1.0.7
[INFO] [stderr]     Checking arrow-schema v57.0.0
[INFO] [stderr]    Compiling ahash v0.8.12
[INFO] [stderr]     Checking rayon v1.11.0
[INFO] [stderr]    Compiling libm v0.2.15
[INFO] [stderr]    Compiling pulp v0.21.5
[INFO] [stderr]    Compiling seq-macro v0.3.6
[INFO] [stderr]     Checking zlib-rs v0.5.2
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling itertools v0.11.0
[INFO] [stderr]    Compiling dyn-stack-macros v0.1.3
[INFO] [stderr]    Compiling malachite-nz v0.4.22
[INFO] [stderr]     Checking reborrow v0.5.5
[INFO] [stderr]     Checking raw-cpuid v11.6.0
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling derive_more-impl v1.0.0
[INFO] [stderr]    Compiling tiny-keccak v2.0.2
[INFO] [stderr]    Compiling zstd-sys v2.0.16+zstd.1.5.7
[INFO] [stderr]     Checking lexical-write-integer v1.0.6
[INFO] [stderr]     Checking lexical-parse-integer v1.0.6
[INFO] [stderr]    Compiling pyo3-build-config v0.27.1
[INFO] [stderr]     Checking lexical-parse-float v1.0.6
[INFO] [stderr]     Checking lexical-write-float v1.0.6
[INFO] [stderr]    Compiling unic-common v0.9.0
[INFO] [stderr]    Compiling unic-char-range v0.9.0
[INFO] [stderr]     Checking regex-automata v0.4.13
[INFO] [stderr]     Checking lexical-core v1.0.6
[INFO] [stderr]    Compiling darling_core v0.20.11
[INFO] [stderr]     Checking libz-rs-sys v0.5.2
[INFO] [stderr]    Compiling unic-char-property v0.9.0
[INFO] [stderr]     Checking bytemuck v1.24.0
[INFO] [stderr]    Compiling unic-ucd-version v0.9.0
[INFO] [stderr]     Checking flate2 v1.1.5
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[INFO] [stderr]    Compiling num-integer v0.1.46
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking dyn-stack v0.13.2
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[INFO] [stderr]    Compiling is-macro v0.3.7
[INFO] [stderr]     Checking atoi v2.0.0
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling phf v0.11.3
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling ppv-lite86 v0.2.21
[INFO] [stderr]     Checking noodles-bgzf v0.43.0
[INFO] [stderr]    Compiling derive_more v1.0.0
[INFO] [stderr]     Checking csv-core v0.1.13
[INFO] [stderr]    Compiling hashbrown v0.14.5
[INFO] [stderr]    Compiling zstd-safe v7.2.4
[INFO] [stderr]     Checking safe_arch v0.7.4
[INFO] [stderr]    Compiling rustpython-parser-core v0.4.0
[INFO] [stderr]    Compiling unic-emoji-char v0.9.0
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[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]     Checking unindent v0.2.4
[INFO] [stderr]     Checking winnow v0.7.13
[INFO] [stderr]    Compiling lalrpop-util v0.20.2
[INFO] [stderr]    Compiling snap v1.1.1
[INFO] [stderr]     Checking simdutf8 v0.1.5
[INFO] [stderr]    Compiling malachite-base v0.4.22
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]     Checking zerofrom v0.1.6
[INFO] [stderr]    Compiling num_enum_derive v0.7.5
[INFO] [stderr]     Checking wide v0.7.33
[INFO] [stderr]     Checking serde v1.0.228
[INFO] [stderr]     Checking serde_json v1.0.145
[INFO] [stderr]     Checking bstr v1.12.1
[INFO] [stderr]     Checking regex v1.12.2
[INFO] [stderr]     Checking csv v1.4.0
[INFO] [stderr]    Compiling pyo3-macros-backend v0.27.1
[INFO] [stderr]    Compiling pyo3-ffi v0.27.1
[INFO] [stderr]     Checking noodles-core v0.18.0
[INFO] [stderr]    Compiling phf_generator v0.11.3
[INFO] [stderr]     Checking thiserror v1.0.69
[INFO] [stderr]    Compiling pyo3 v0.27.1
[INFO] [stderr]     Checking noodles-csi v0.51.0
[INFO] [stderr]     Checking ndarray v0.16.1
[INFO] [stderr]    Compiling numpy v0.27.0
[INFO] [stderr]    Compiling phf_codegen v0.11.3
[INFO] [stderr]     Checking serde_spanned v1.0.3
[INFO] [stderr]    Compiling unicode_names2_generator v1.3.0
[INFO] [stderr]    Compiling rustpython-parser v0.4.0
[INFO] [stderr]     Checking toml_datetime v0.7.3
[INFO] [stderr]     Checking noodles-sam v0.79.0
[INFO] [stderr]     Checking brotli-decompressor v5.0.0
[INFO] [stderr]    Compiling yoke-derive v0.7.5
[INFO] [stderr]     Checking num-iter v0.1.45
[INFO] [stderr]     Checking ordered-float v5.1.0
[INFO] [stderr]     Checking ordered-float v2.10.1
[INFO] [stderr]     Checking toml_parser v1.0.4
[INFO] [stderr]     Checking twox-hash v2.1.2
[INFO] [stderr]    Compiling unicode_names2 v1.3.0
[INFO] [stderr]    Compiling syn v0.15.44
[INFO] [stderr]     Checking bytecount v0.6.9
[INFO] [stderr]    Compiling zip v1.1.4
[INFO] [stderr]     Checking brotli v8.0.2
[INFO] [stderr]     Checking noodles-bam v0.83.0
[INFO] [stderr]     Checking num_enum v0.7.5
[INFO] [stderr]     Checking lz4_flex v0.11.5
[INFO] [stderr]     Checking thrift v0.17.0
[INFO] [stderr]     Checking simba v0.9.1
[INFO] [stderr]     Checking safetensors v0.4.5
[INFO] [stderr]     Checking num v0.4.3
[INFO] [stderr]     Checking bzip2 v0.4.4
[INFO] [stderr]     Checking toml v0.9.8
[INFO] [stderr]    Compiling darling_macro v0.20.11
[INFO] [stderr]     Checking noodles-fasta v0.56.0
[INFO] [stderr]     Checking noodles-fastq v0.21.0
[INFO] [stderr]     Checking xz2 v0.1.7
[INFO] [stderr]     Checking rand_chacha v0.9.0
[INFO] [stderr]     Checking yoke v0.7.5
[INFO] [stderr]     Checking memmap2 v0.9.9
[INFO] [stderr]     Checking buffer-redux v1.0.2
[INFO] [stderr]    Compiling proc-macro-error-attr2 v2.0.0
[INFO] [stderr]     Checking rand v0.9.2
[INFO] [stderr]    Compiling darling v0.20.11
[INFO] [stderr]     Checking inventory v0.3.21
[INFO] [stderr]    Compiling derive_builder_core v0.20.2
[INFO] [stderr]     Checking smawk v0.3.2
[INFO] [stderr]     Checking unicode-linebreak v0.1.5
[INFO] [stderr]     Checking hashbrown v0.15.5
[INFO] [stderr]     Checking needletail v0.5.1
[INFO] [stderr]    Compiling proc-macro-error2 v2.0.1
[INFO] [stderr]     Checking noodles v0.101.0
[INFO] [stderr]     Checking textwrap v0.16.2
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]     Checking lexical v7.0.5
[INFO] [stderr]     Checking rand_distr v0.5.1
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking colored v3.0.0
[INFO] [stderr]     Checking petgraph v0.8.3
[INFO] [stderr]    Compiling getset v0.1.6
[INFO] [stderr]     Checking bv v0.11.1
[INFO] [stderr]     Checking half v2.7.1
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking enum-map v2.7.3
[INFO] [stderr]     Checking multimap v0.10.1
[INFO] [stderr]    Compiling derive_builder_macro v0.20.2
[INFO] [stderr]     Checking arrow-buffer v57.0.0
[INFO] [stderr]     Checking gemm-common v0.18.2
[INFO] [stderr]     Checking derive_builder v0.20.2
[INFO] [stderr]     Checking float8 v0.4.2
[INFO] [stderr] error: could not compile `brotli` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/42f4793e5a514858221b07ac379029d90353913e/bin/rustc --crate-name brotli --edition=2015 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/brotli-8.0.2/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata -C embed-bitcode=no -C debuginfo=2 --cfg 'feature="alloc-stdlib"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("alloc-stdlib", "benchmark", "billing", "default", "disable-timer", "disallow_large_window_size", "external-literal-probability", "ffi-api", "float64", "floating_point_context_mixing", "no-stdlib-ffi-binding", "pass-through-ffi-panics", "seccomp", "sha2", "simd", "std", "validation", "vector_scratch_space"))' -C metadata=fbe35411e319994e -C extra-filename=-8eb04c1a1ff4614b --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern alloc_no_stdlib=/opt/rustwide/target/debug/deps/liballoc_no_stdlib-7b1bd6f28b6396be.rmeta --extern alloc_stdlib=/opt/rustwide/target/debug/deps/liballoc_stdlib-72e1816e3e7f5ce9.rmeta --extern brotli_decompressor=/opt/rustwide/target/debug/deps/libbrotli_decompressor-ed3c7399c8be7b3d.rmeta --cap-lints allow --cap-lints=forbid` (signal: 9, SIGKILL: kill)
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] running `Command { std: "docker" "inspect" "ba7b2a048907695e4e8fa23ddf4d518a86d27e375139d77796a3431e3f4759c8", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ba7b2a048907695e4e8fa23ddf4d518a86d27e375139d77796a3431e3f4759c8", kill_on_drop: false }`
[INFO] [stdout] ba7b2a048907695e4e8fa23ddf4d518a86d27e375139d77796a3431e3f4759c8