[INFO] cloning repository https://github.com/edg1983/saige-qtl-rust
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/edg1983/saige-qtl-rust" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fedg1983%2Fsaige-qtl-rust", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fedg1983%2Fsaige-qtl-rust'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] da1ea4d8b2cc5cfac106d59a9417a7afbde07c56
[INFO] checking edg1983/saige-qtl-rust against master#42f4793e5a514858221b07ac379029d90353913e for pr-148952
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fedg1983%2Fsaige-qtl-rust" "/workspace/builds/worker-7-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-7-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/edg1983/saige-qtl-rust
[INFO] finished tweaking git repo https://github.com/edg1983/saige-qtl-rust
[INFO] tweaked toml for git repo https://github.com/edg1983/saige-qtl-rust written to /workspace/builds/worker-7-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/edg1983/saige-qtl-rust on toolchain 42f4793e5a514858221b07ac379029d90353913e
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+42f4793e5a514858221b07ac379029d90353913e" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/edg1983/saige-qtl-rust already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+42f4793e5a514858221b07ac379029d90353913e" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
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[INFO] [stderr]   Downloaded rust-htslib v0.51.0
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[INFO] [stderr]   Downloaded directories v5.0.1
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[INFO] [stderr]   Downloaded pyo3-macros-backend v0.20.3
[INFO] [stderr]   Downloaded polars-pipe v0.41.3
[INFO] [stderr]   Downloaded numpy v0.20.0
[INFO] [stderr]   Downloaded polars-parquet v0.41.3
[INFO] [stderr]   Downloaded pest v2.8.3
[INFO] [stderr]   Downloaded sqlparser v0.47.0
[INFO] [stderr]   Downloaded chrono-tz v0.8.6
[INFO] [stderr]   Downloaded pest_meta v2.8.3
[INFO] [stderr]   Downloaded pyo3 v0.20.3
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[INFO] [stderr]   Downloaded polars-core v0.41.3
[INFO] [stderr]   Downloaded cc v1.2.45
[INFO] [stderr]   Downloaded argmin v0.11.0
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[INFO] [stderr]   Downloaded lz4-sys v1.11.1+lz4-1.10.0
[INFO] [stderr]   Downloaded polars-arrow v0.41.3
[INFO] [stderr]   Downloaded polars-plan v0.41.3
[INFO] [stderr]   Downloaded pyo3-build-config v0.20.3
[INFO] [stderr]   Downloaded xattr v1.6.1
[INFO] [stderr]   Downloaded array-init-cursor v0.2.1
[INFO] [stderr]   Downloaded libz-sys v1.1.23
[INFO] [stderr]   Downloaded polars-error v0.41.3
[INFO] [stderr]   Downloaded smartstring v1.0.1
[INFO] [stderr]   Downloaded custom_derive v0.1.7
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded anyinput-derive v0.1.8
[INFO] [stderr]   Downloaded anyinput v0.1.8
[INFO] [stderr]   Downloaded fetch-data v0.1.6
[INFO] [stderr]   Downloaded py_literal v0.4.0
[INFO] [stderr]   Downloaded unindent v0.2.4
[INFO] [stderr]   Downloaded katexit v0.1.5
[INFO] [stderr]   Downloaded recursive-proc-macro-impl v0.1.1
[INFO] [stderr]   Downloaded openblas-build v0.10.13
[INFO] [stderr]   Downloaded pest_generator v2.8.3
[INFO] [stderr]   Downloaded pest_derive v2.8.3
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[INFO] [stderr]   Downloaded temp_testdir v0.2.3
[INFO] [stderr]   Downloaded ndarray-linalg v0.16.0
[INFO] [stderr]   Downloaded polars-ops v0.41.3
[INFO] [stderr]   Downloaded polars v0.41.3
[INFO] [stderr]   Downloaded xxhash-rust v0.8.15
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[INFO] [stderr]   Downloaded parquet-format-safe v0.2.4
[INFO] [stderr]   Downloaded jiff v0.2.16
[INFO] [stderr]   Downloaded polars-expr v0.41.3
[INFO] [stderr]   Downloaded memmap2 v0.7.1
[INFO] [stderr]   Downloaded argminmax v0.6.3
[INFO] [stderr]   Downloaded polars-compute v0.41.3
[INFO] [stderr]   Downloaded atoi_simd v0.15.6
[INFO] [stderr]   Downloaded itoap v1.0.1
[INFO] [stderr]   Downloaded lz4 v1.28.1
[INFO] [stderr]   Downloaded streaming-iterator v0.1.9
[INFO] [stderr]   Downloaded polars-arrow-format v0.1.0
[INFO] [stderr]   Downloaded polars-utils v0.41.3
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded ndarray-npy v0.8.1
[INFO] [stderr]   Downloaded pyo3-macros v0.20.3
[INFO] [stderr]   Downloaded cauchy v0.4.0
[INFO] [stderr]   Downloaded lax v0.16.0
[INFO] [stderr]   Downloaded streaming-decompression v0.1.2
[INFO] [stderr]   Downloaded polars-mem-engine v0.41.3
[INFO] [stderr]   Downloaded recursive v0.1.1
[INFO] [stderr]   Downloaded now v0.1.3
[INFO] [stderr]   Downloaded target-features v0.1.6
[INFO] [stderr]   Downloaded multiversion v0.7.4
[INFO] [stderr]   Downloaded polars-row v0.41.3
[INFO] [stderr]   Downloaded unicode-reverse v1.0.9
[INFO] [stderr]   Downloaded curl-sys v0.4.84+curl-8.17.0
[INFO] [stderr]   Downloaded hts-sys v2.2.0
[INFO] [stderr]   Downloaded openssl-src v300.5.4+3.5.4
[INFO] [stderr]   Downloaded lapack-sys v0.14.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+42f4793e5a514858221b07ac379029d90353913e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 6e392a5f7331bcb46f4a8f3759438fd8b2dae818d2e05e1b7d4959a905075ac9
[INFO] running `Command { std: "docker" "start" "-a" "6e392a5f7331bcb46f4a8f3759438fd8b2dae818d2e05e1b7d4959a905075ac9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "6e392a5f7331bcb46f4a8f3759438fd8b2dae818d2e05e1b7d4959a905075ac9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6e392a5f7331bcb46f4a8f3759438fd8b2dae818d2e05e1b7d4959a905075ac9", kill_on_drop: false }`
[INFO] [stdout] 6e392a5f7331bcb46f4a8f3759438fd8b2dae818d2e05e1b7d4959a905075ac9
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+42f4793e5a514858221b07ac379029d90353913e" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 2af4be6ce105f2b5dfab2cbadcb0e5fe52ca6baf0c255d0690cde4d5930ef996
[INFO] running `Command { std: "docker" "start" "-a" "2af4be6ce105f2b5dfab2cbadcb0e5fe52ca6baf0c255d0690cde4d5930ef996", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.103
[INFO] [stderr]    Compiling quote v1.0.42
[INFO] [stderr]    Compiling libm v0.2.15
[INFO] [stderr]    Compiling serde_core v1.0.228
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling rayon-core v1.13.0
[INFO] [stderr]    Compiling cc v1.2.45
[INFO] [stderr]     Checking either v1.15.0
[INFO] [stderr]     Checking smallvec v1.15.1
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]    Compiling object v0.32.2
[INFO] [stderr]     Checking bitflags v2.10.0
[INFO] [stderr]    Compiling target-features v0.1.6
[INFO] [stderr]     Checking array-init-cursor v0.2.1
[INFO] [stderr]    Compiling target-lexicon v0.12.16
[INFO] [stderr]     Checking planus v0.3.1
[INFO] [stderr]    Compiling smartstring v1.0.1
[INFO] [stderr]     Checking cblas-sys v0.1.4
[INFO] [stderr]    Compiling polars-utils v0.41.3
[INFO] [stderr]     Checking simdutf8 v0.1.5
[INFO] [stderr]     Checking parking_lot_core v0.9.12
[INFO] [stderr]     Checking iana-time-zone v0.1.64
[INFO] [stderr]     Checking parking_lot v0.12.5
[INFO] [stderr]     Checking raw-cpuid v11.6.0
[INFO] [stderr]    Compiling polars-arrow v0.41.3
[INFO] [stderr]     Checking dyn-clone v1.0.20
[INFO] [stderr]     Checking rayon v1.11.0
[INFO] [stderr]    Compiling rustix v1.1.2
[INFO] [stderr]     Checking streaming-iterator v0.1.9
[INFO] [stderr]     Checking foreign_vec v0.1.0
[INFO] [stderr]     Checking strength_reduce v0.2.4
[INFO] [stderr]     Checking fast-float v0.2.0
[INFO] [stderr]     Checking atoi_simd v0.15.6
[INFO] [stderr]     Checking ethnum v1.5.2
[INFO] [stderr]    Compiling polars-compute v0.41.3
[INFO] [stderr]    Compiling openssl v0.10.75
[INFO] [stderr]    Compiling zeroize v1.8.2
[INFO] [stderr]    Compiling httparse v1.10.1
[INFO] [stderr]    Compiling syn v2.0.110
[INFO] [stderr]    Compiling foreign-types-shared v0.1.1
[INFO] [stderr]     Checking linux-raw-sys v0.11.0
[INFO] [stderr]    Compiling litrs v1.0.0
[INFO] [stderr]    Compiling foreign-types v0.3.2
[INFO] [stderr]    Compiling bytes v1.10.1
[INFO] [stderr]    Compiling base64ct v1.8.0
[INFO] [stderr]    Compiling rustls-pki-types v1.13.0
[INFO] [stderr]    Compiling pyo3-build-config v0.20.3
[INFO] [stderr]    Compiling pem-rfc7468 v0.7.0
[INFO] [stderr]    Compiling polars-core v0.41.3
[INFO] [stderr]    Compiling openssl-probe v0.1.6
[INFO] [stderr]    Compiling adler2 v2.0.1
[INFO] [stderr]     Checking unicode-segmentation v1.12.0
[INFO] [stderr]    Compiling simd-adler32 v0.3.7
[INFO] [stderr]    Compiling document-features v0.2.12
[INFO] [stderr]    Compiling http v1.3.1
[INFO] [stderr]    Compiling webpki-root-certs v1.0.4
[INFO] [stderr]    Compiling miniz_oxide v0.8.9
[INFO] [stderr]    Compiling der v0.7.10
[INFO] [stderr]    Compiling crc32fast v1.5.0
[INFO] [stderr]    Compiling stacker v0.1.22
[INFO] [stderr]    Compiling openssl-sys v0.9.111
[INFO] [stderr]    Compiling filetime v0.2.26
[INFO] [stderr]    Compiling polars-ops v0.41.3
[INFO] [stderr]    Compiling percent-encoding v2.3.2
[INFO] [stderr]    Compiling glob v0.3.3
[INFO] [stderr]    Compiling option-ext v0.2.0
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking approx v0.4.0
[INFO] [stderr]     Checking chrono v0.4.42
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]    Compiling native-tls v0.2.14
[INFO] [stderr]    Compiling utf-8 v0.7.6
[INFO] [stderr]     Checking xxhash-rust v0.8.15
[INFO] [stderr]     Checking argminmax v0.6.3
[INFO] [stderr]     Checking crossterm v0.29.0
[INFO] [stderr]    Compiling dirs-sys v0.5.0
[INFO] [stderr]    Compiling ureq-proto v0.5.2
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]    Compiling flate2 v1.1.5
[INFO] [stderr]    Compiling ring v0.17.14
[INFO] [stderr]     Checking comfy-table v7.2.1
[INFO] [stderr]    Compiling xattr v1.6.1
[INFO] [stderr]    Compiling tar v0.4.44
[INFO] [stderr]    Compiling cmake v0.1.54
[INFO] [stderr]    Compiling openssl-src v300.5.4+3.5.4
[INFO] [stderr]     Checking now v0.1.3
[INFO] [stderr]    Compiling dirs v6.0.0
[INFO] [stderr]     Checking atoi v2.0.0
[INFO] [stderr]    Compiling regex-syntax v0.8.8
[INFO] [stderr]    Compiling pest v2.8.3
[INFO] [stderr]    Compiling libz-sys v1.1.23
[INFO] [stderr]    Compiling pyo3-ffi v0.20.3
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling num-complex v0.4.6
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling libloading v0.8.9
[INFO] [stderr]    Compiling polars-plan v0.41.3
[INFO] [stderr]     Checking memmap2 v0.7.1
[INFO] [stderr]    Compiling bindgen v0.69.5
[INFO] [stderr]     Checking home v0.5.12
[INFO] [stderr]    Compiling itertools v0.12.1
[INFO] [stderr]    Compiling ndarray v0.16.1
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling curl-sys v0.4.84+curl-8.17.0
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling darling_core v0.14.4
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]     Checking form_urlencoded v1.2.2
[INFO] [stderr]    Compiling pest_meta v2.8.3
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]    Compiling lazy_static v1.5.0
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]    Compiling lazycell v1.3.0
[INFO] [stderr]    Compiling ar_archive_writer v0.2.0
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling regex-automata v0.4.13
[INFO] [stderr]    Compiling synstructure v0.13.2
[INFO] [stderr]    Compiling pyo3-macros-backend v0.20.3
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling psm v0.1.28
[INFO] [stderr]    Compiling pest_generator v2.8.3
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]     Checking webpki-roots v1.0.4
[INFO] [stderr]     Checking crypto-common v0.1.6
[INFO] [stderr]    Compiling pyo3 v0.20.3
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling rustls v0.23.35
[INFO] [stderr]     Checking lapack-sys v0.14.0
[INFO] [stderr]     Checking subtle v2.6.1
[INFO] [stderr]     Checking anstream v0.6.21
[INFO] [stderr]    Compiling regex v1.12.2
[INFO] [stderr]     Checking webpki-roots v0.26.11
[INFO] [stderr]     Checking digest v0.10.7
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking num-bigint v0.4.6
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]     Checking crossbeam-channel v0.5.15
[INFO] [stderr]     Checking num_cpus v1.17.0
[INFO] [stderr]     Checking dirs-sys v0.3.7
[INFO] [stderr]    Compiling polars-lazy v0.41.3
[INFO] [stderr]     Checking unindent v0.2.4
[INFO] [stderr]    Compiling indoc v2.0.7
[INFO] [stderr]     Checking dirs-sys v0.4.1
[INFO] [stderr]     Checking streaming-decompression v0.1.2
[INFO] [stderr]     Checking sha2 v0.10.9
[INFO] [stderr] error: could not compile `syn` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/42f4793e5a514858221b07ac379029d90353913e/bin/rustc --crate-name syn --edition=2021 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/syn-2.0.110/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no --cfg 'feature="clone-impls"' --cfg 'feature="default"' --cfg 'feature="derive"' --cfg 'feature="extra-traits"' --cfg 'feature="fold"' --cfg 'feature="full"' --cfg 'feature="parsing"' --cfg 'feature="printing"' --cfg 'feature="proc-macro"' --cfg 'feature="visit"' --cfg 'feature="visit-mut"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("clone-impls", "default", "derive", "extra-traits", "fold", "full", "parsing", "printing", "proc-macro", "test", "visit", "visit-mut"))' -C metadata=bbf3fba9bf450f47 -C extra-filename=-9654c080fa22e42f --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern proc_macro2=/opt/rustwide/target/debug/deps/libproc_macro2-7f248eb89d15af9d.rmeta --extern quote=/opt/rustwide/target/debug/deps/libquote-e50ca8f86bc2df2a.rmeta --extern unicode_ident=/opt/rustwide/target/debug/deps/libunicode_ident-9533002ac35f5809.rmeta --cap-lints allow --cap-lints=forbid` (signal: 9, SIGKILL: kill)
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] running `Command { std: "docker" "inspect" "2af4be6ce105f2b5dfab2cbadcb0e5fe52ca6baf0c255d0690cde4d5930ef996", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2af4be6ce105f2b5dfab2cbadcb0e5fe52ca6baf0c255d0690cde4d5930ef996", kill_on_drop: false }`
[INFO] [stdout] 2af4be6ce105f2b5dfab2cbadcb0e5fe52ca6baf0c255d0690cde4d5930ef996