[INFO] fetching crate deepbiop-cli 0.1.16...
[INFO] checking deepbiop-cli-0.1.16 against try#95813608313bff49cfc1afc393a946a3c085b772 for pr-148946
[INFO] extracting crate deepbiop-cli 0.1.16 into /workspace/builds/worker-3-tc2/source
[INFO] started tweaking crates.io crate deepbiop-cli 0.1.16
[INFO] finished tweaking crates.io crate deepbiop-cli 0.1.16
[INFO] tweaked toml for crates.io crate deepbiop-cli 0.1.16 written to /workspace/builds/worker-3-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate deepbiop-cli 0.1.16 on toolchain 95813608313bff49cfc1afc393a946a3c085b772
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+95813608313bff49cfc1afc393a946a3c085b772" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate deepbiop-cli 0.1.16 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+95813608313bff49cfc1afc393a946a3c085b772" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+95813608313bff49cfc1afc393a946a3c085b772" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 3b89905d386e73bdf79d757d0078b2d04c131ecd16c29eccab01b561b23ee381
[INFO] running `Command { std: "docker" "start" "-a" "3b89905d386e73bdf79d757d0078b2d04c131ecd16c29eccab01b561b23ee381", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "3b89905d386e73bdf79d757d0078b2d04c131ecd16c29eccab01b561b23ee381", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3b89905d386e73bdf79d757d0078b2d04c131ecd16c29eccab01b561b23ee381", kill_on_drop: false }`
[INFO] [stdout] 3b89905d386e73bdf79d757d0078b2d04c131ecd16c29eccab01b561b23ee381
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+95813608313bff49cfc1afc393a946a3c085b772" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] b55518ffa9d2008d6ee40367313879f4da5b31b7715922af2585c322663eacf1
[INFO] running `Command { std: "docker" "start" "-a" "b55518ffa9d2008d6ee40367313879f4da5b31b7715922af2585c322663eacf1", kill_on_drop: false }`
[INFO] [stderr]    Compiling zerocopy v0.8.27
[INFO] [stderr]    Compiling target-lexicon v0.13.3
[INFO] [stderr]    Compiling serde_core v1.0.228
[INFO] [stderr]     Checking regex-syntax v0.8.8
[INFO] [stderr]     Checking getrandom v0.3.4
[INFO] [stderr]    Compiling bytemuck_derive v1.10.2
[INFO] [stderr]    Compiling jobserver v0.1.34
[INFO] [stderr]    Compiling getrandom v0.2.16
[INFO] [stderr]     Checking lexical-util v1.0.7
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking chrono v0.4.42
[INFO] [stderr]     Checking arrow-schema v57.0.0
[INFO] [stderr]     Checking rayon v1.11.0
[INFO] [stderr]    Compiling libm v0.2.15
[INFO] [stderr]    Compiling pulp v0.21.5
[INFO] [stderr]     Checking zlib-rs v0.5.2
[INFO] [stderr]     Checking rand_core v0.9.3
[INFO] [stderr]     Checking num-bigint v0.4.6
[INFO] [stderr]    Compiling cc v1.2.44
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]     Checking ahash v0.8.12
[INFO] [stderr]    Compiling itertools v0.11.0
[INFO] [stderr]     Checking rand_chacha v0.9.0
[INFO] [stderr]     Checking rand v0.9.2
[INFO] [stderr]    Compiling dyn-stack-macros v0.1.3
[INFO] [stderr]     Checking lexical-parse-integer v1.0.6
[INFO] [stderr]     Checking lexical-write-integer v1.0.6
[INFO] [stderr]     Checking lexical-parse-float v1.0.6
[INFO] [stderr]    Compiling pyo3-build-config v0.27.1
[INFO] [stderr]     Checking libz-rs-sys v0.5.2
[INFO] [stderr]    Compiling malachite-nz v0.4.22
[INFO] [stderr]     Checking raw-cpuid v11.6.0
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]     Checking flate2 v1.1.5
[INFO] [stderr]    Compiling derive_more-impl v1.0.0
[INFO] [stderr]     Checking rand_distr v0.5.1
[INFO] [stderr]     Checking lexical-write-float v1.0.6
[INFO] [stderr]     Checking bytemuck v1.24.0
[INFO] [stderr]    Compiling unic-common v0.9.0
[INFO] [stderr]    Compiling unic-char-range v0.9.0
[INFO] [stderr]    Compiling unic-ucd-version v0.9.0
[INFO] [stderr]     Checking lexical-core v1.0.6
[INFO] [stderr]    Compiling unic-char-property v0.9.0
[INFO] [stderr]    Compiling rustpython-parser-vendored v0.4.0
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking half v2.7.1
[INFO] [stderr]     Checking dyn-stack v0.13.2
[INFO] [stderr]     Checking noodles-bgzf v0.43.0
[INFO] [stderr]    Compiling tiny-keccak v2.0.2
[INFO] [stderr]    Compiling flatbuffers v25.9.23
[INFO] [stderr]    Compiling darling_core v0.20.11
[INFO] [stderr]     Checking regex-automata v0.4.13
[INFO] [stderr]     Checking arrow-buffer v57.0.0
[INFO] [stderr]    Compiling ppv-lite86 v0.2.21
[INFO] [stderr]     Checking atoi v2.0.0
[INFO] [stderr]    Compiling hashbrown v0.14.5
[INFO] [stderr]    Compiling is-macro v0.3.7
[INFO] [stderr]    Compiling phf v0.11.3
[INFO] [stderr]    Compiling zstd-safe v7.2.4
[INFO] [stderr]    Compiling unic-emoji-char v0.9.0
[INFO] [stderr]    Compiling unic-ucd-ident v0.9.0
[INFO] [stderr]     Checking csv-core v0.1.13
[INFO] [stderr]    Compiling snap v1.1.1
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling zstd-sys v2.0.16+zstd.1.5.7
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]     Checking arrow-data v57.0.0
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling malachite-base v0.4.22
[INFO] [stderr]    Compiling pyo3-ffi v0.27.1
[INFO] [stderr]    Compiling pyo3-macros-backend v0.27.1
[INFO] [stderr]    Compiling rustpython-parser-core v0.4.0
[INFO] [stderr]    Compiling pyo3 v0.27.1
[INFO] [stderr]    Compiling numpy v0.27.0
[INFO] [stderr]     Checking anstyle v1.0.13
[INFO] [stderr]    Compiling lalrpop-util v0.20.2
[INFO] [stderr]    Compiling indoc v2.0.7
[INFO] [stderr]     Checking arrow-array v57.0.0
[INFO] [stderr]     Checking anstyle-query v1.1.4
[INFO] [stderr]     Checking serde v1.0.228
[INFO] [stderr]     Checking serde_json v1.0.145
[INFO] [stderr]     Checking serde_spanned v1.0.3
[INFO] [stderr]     Checking toml_datetime v0.7.3
[INFO] [stderr]     Checking stable_deref_trait v1.2.1
[INFO] [stderr]     Checking unindent v0.2.4
[INFO] [stderr]     Checking simdutf8 v0.1.5
[INFO] [stderr]     Checking is_terminal_polyfill v1.70.2
[INFO] [stderr]     Checking csv v1.4.0
[INFO] [stderr]     Checking ndarray v0.16.1
[INFO] [stderr]     Checking anstream v0.6.21
[INFO] [stderr]    Compiling phf_generator v0.11.3
[INFO] [stderr]     Checking toml v0.9.8
[INFO] [stderr]    Compiling phf_codegen v0.11.3
[INFO] [stderr]     Checking zerofrom v0.1.6
[INFO] [stderr]    Compiling num_enum_derive v0.7.5
[INFO] [stderr]    Compiling unicode_names2_generator v1.3.0
[INFO] [stderr]    Compiling rustpython-parser v0.4.0
[INFO] [stderr]    Compiling yoke-derive v0.7.5
[INFO] [stderr]     Checking bstr v1.12.1
[INFO] [stderr]    Compiling derive_more v1.0.0
[INFO] [stderr]     Checking regex v1.12.2
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]     Checking num-iter v0.1.45
[INFO] [stderr]     Checking gemm-common v0.18.2
[INFO] [stderr]     Checking ordered-float v2.10.1
[INFO] [stderr]     Checking twox-hash v2.1.2
[INFO] [stderr]    Compiling zip v1.1.4
[INFO] [stderr]     Checking rustc-hash v2.1.1
[INFO] [stderr]     Checking integer-encoding v3.0.4
[INFO] [stderr]     Checking lz4_flex v0.11.5
[INFO] [stderr]     Checking num v0.4.3
[INFO] [stderr]     Checking gemm-f32 v0.18.2
[INFO] [stderr]     Checking gemm-c32 v0.18.2
[INFO] [stderr]    Compiling unicode_names2 v1.3.0
[INFO] [stderr]     Checking gemm-f64 v0.18.2
[INFO] [stderr]     Checking gemm-c64 v0.18.2
[INFO] [stderr]     Checking noodles-core v0.18.0
[INFO] [stderr]     Checking noodles-fastq v0.21.0
[INFO] [stderr]    Compiling darling_macro v0.20.11
[INFO] [stderr]     Checking noodles-csi v0.51.0
[INFO] [stderr]     Checking noodles-fasta v0.56.0
[INFO] [stderr]     Checking thrift v0.17.0
[INFO] [stderr]     Checking num_enum v0.7.5
[INFO] [stderr]     Checking yoke v0.7.5
[INFO] [stderr]    Compiling darling v0.20.11
[INFO] [stderr]    Compiling derive_builder_core v0.20.2
[INFO] [stderr]     Checking safetensors v0.4.5
[INFO] [stderr]     Checking noodles-sam v0.79.0
[INFO] [stderr]     Checking bzip2 v0.4.4
[INFO] [stderr]     Checking brotli v8.0.2
[INFO] [stderr]     Checking xz2 v0.1.7
[INFO] [stderr]     Checking gemm-f16 v0.18.2
[INFO] [stderr]     Checking memmap2 v0.9.9
[INFO] [stderr]     Checking arrow-select v57.0.0
[INFO] [stderr]     Checking arrow-row v57.0.0
[INFO] [stderr]     Checking arrow-arith v57.0.0
[INFO] [stderr]     Checking ordered-float v5.1.0
[INFO] [stderr]     Checking num_cpus v1.17.0
[INFO] [stderr]     Checking buffer-redux v1.0.2
[INFO] [stderr]     Checking maplit v1.0.2
[INFO] [stderr]     Checking bytecount v0.6.9
[INFO] [stderr]     Checking float8 v0.4.2
[INFO] [stderr]     Checking lexical v7.0.5
[INFO] [stderr]     Checking smawk v0.3.2
[INFO] [stderr]     Checking clap_lex v0.7.6
[INFO] [stderr]     Checking textwrap v0.16.2
[INFO] [stderr]     Checking clap_builder v4.5.51
[INFO] [stderr]     Checking needletail v0.5.1
[INFO] [stderr]     Checking arrow-cast v57.0.0
[INFO] [stderr]     Checking arrow-ipc v57.0.0
[INFO] [stderr]     Checking gemm v0.18.2
[INFO] [stderr]     Checking arrow-string v57.0.0
[INFO] [stderr]     Checking arrow-ord v57.0.0
[INFO] [stderr]     Checking ug v0.5.0
[INFO] [stderr]     Checking tempfile v3.23.0
[INFO] [stderr]    Compiling darling_core v0.21.3
[INFO] [stderr]    Compiling clap_derive v4.5.49
[INFO] [stderr]    Compiling derive_builder_macro v0.20.2
[INFO] [stderr]    Compiling nix v0.30.1
[INFO] [stderr]     Checking noodles-bam v0.83.0
[INFO] [stderr]     Checking derive_builder v0.20.2
[INFO] [stderr]    Compiling prettyplease v0.2.37
[INFO] [stderr]     Checking backtrace v0.3.76
[INFO] [stderr]     Checking env_filter v0.1.4
[INFO] [stderr]     Checking os_info v3.12.0
[INFO] [stderr]     Checking uuid v1.18.1
[INFO] [stderr]     Checking jiff v0.2.15
[INFO] [stderr]     Checking candle-core v0.9.2-alpha.1
[INFO] [stderr]     Checking arrow-csv v57.0.0
[INFO] [stderr]     Checking arrow-json v57.0.0
[INFO] [stderr]     Checking human-panic v2.0.4
[INFO] [stderr]     Checking noodles v0.101.0
[INFO] [stderr]    Compiling pyo3-macros v0.27.1
[INFO] [stderr]     Checking ctrlc v3.5.1
[INFO] [stderr]     Checking arrow v57.0.0
[INFO] [stderr]     Checking clap v4.5.51
[INFO] [stderr]     Checking clap_complete v4.5.60
[INFO] [stderr]     Checking clap-verbosity-flag v3.0.4
[INFO] [stderr]     Checking clap-markdown v0.1.5
[INFO] [stderr]    Compiling darling_macro v0.21.3
[INFO] [stderr]    Compiling darling v0.21.3
[INFO] [stderr]    Compiling bon-macros v3.8.1
[INFO] [stderr]     Checking env_logger v0.11.8
[INFO] [stderr]     Checking zstd v0.13.3
[INFO] [stderr]     Checking parquet v57.0.0
[INFO] [stderr]     Checking bon v3.8.1
[INFO] [stderr]    Compiling malachite-q v0.4.22
[INFO] [stderr]    Compiling malachite v0.4.22
[INFO] [stderr]    Compiling malachite-bigint v0.2.3
[INFO] [stderr]    Compiling rustpython-ast v0.4.0
[INFO] [stderr]    Compiling pyo3-stub-gen-derive v0.17.0
[INFO] [stderr]     Checking pyo3-stub-gen v0.17.0
[INFO] [stderr]     Checking deepbiop-utils v0.1.16
[INFO] [stderr]     Checking deepbiop-core v0.1.16
[INFO] [stderr]     Checking deepbiop-fq v0.1.16
[INFO] [stderr]     Checking deepbiop-fa v0.1.16
[INFO] [stderr]     Checking deepbiop-bam v0.1.16
[INFO] [stderr]     Checking deepbiop-cli v0.1.16 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 07s
[INFO] running `Command { std: "docker" "inspect" "b55518ffa9d2008d6ee40367313879f4da5b31b7715922af2585c322663eacf1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b55518ffa9d2008d6ee40367313879f4da5b31b7715922af2585c322663eacf1", kill_on_drop: false }`
[INFO] [stdout] b55518ffa9d2008d6ee40367313879f4da5b31b7715922af2585c322663eacf1