[INFO] cloning repository https://github.com/codebiogenomics/minifySeq
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/codebiogenomics/minifySeq" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fcodebiogenomics%2FminifySeq", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fcodebiogenomics%2FminifySeq'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 0b75e9dcb7dc20465a82f56cf509db6ba50a72b3
[INFO] checking codebiogenomics/minifySeq/0b75e9dcb7dc20465a82f56cf509db6ba50a72b3 against master#c8551d3c63c51f290cf1dc9dc4714249ea849fd1 for pr-148946
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fcodebiogenomics%2FminifySeq" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/codebiogenomics/minifySeq
[INFO] finished tweaking git repo https://github.com/codebiogenomics/minifySeq
[INFO] tweaked toml for git repo https://github.com/codebiogenomics/minifySeq written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/codebiogenomics/minifySeq on toolchain c8551d3c63c51f290cf1dc9dc4714249ea849fd1
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c8551d3c63c51f290cf1dc9dc4714249ea849fd1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/codebiogenomics/minifySeq already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c8551d3c63c51f290cf1dc9dc4714249ea849fd1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded value-bag v1.11.1
[INFO] [stderr]   Downloaded xgboost v0.1.4
[INFO] [stderr]   Downloaded proc-macro2 v0.3.5
[INFO] [stderr]   Downloaded async-global-executor v2.4.1
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[INFO] [stderr]   Downloaded quote v0.5.2
[INFO] [stderr]   Downloaded format_num v0.1.0
[INFO] [stderr]   Downloaded ucd-util v0.1.10
[INFO] [stderr]   Downloaded redox_syscall v0.5.15
[INFO] [stderr]   Downloaded async-executor v1.13.2
[INFO] [stderr]   Downloaded async-io v2.5.0
[INFO] [stderr]   Downloaded matrixmultiply v0.3.10
[INFO] [stderr]   Downloaded flate2 v1.1.4
[INFO] [stderr]   Downloaded cc v1.2.41
[INFO] [stderr]   Downloaded sprs v0.11.3
[INFO] [stderr]   Downloaded linfa v0.8.0
[INFO] [stderr]   Downloaded clap_builder v4.5.42
[INFO] [stderr]   Downloaded charts v0.3.0
[INFO] [stderr]   Downloaded async-std v1.13.1
[INFO] [stderr]   Downloaded torch-sys v0.20.0
[INFO] [stderr]   Downloaded clap_derive v4.5.41
[INFO] [stderr]   Downloaded clap v4.5.42
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[INFO] [stderr]   Downloaded svg v0.7.2
[INFO] [stderr]   Downloaded derive_builder_core v0.2.0
[INFO] [stderr]   Downloaded derive_builder v0.5.1
[INFO] [stderr]   Downloaded libloading v0.5.2
[INFO] [stderr]   Downloaded bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]   Downloaded zstd-sys v2.0.16+zstd.1.5.7
[INFO] [stderr]   Downloaded xgboost-sys v0.1.2
[INFO] [stderr]   Downloaded tch v0.20.0
[INFO] [stderr]   Downloaded clang-sys v0.22.0
[INFO] [stderr]   Downloaded bindgen v0.36.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c8551d3c63c51f290cf1dc9dc4714249ea849fd1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] caf201d19d117e2cb831bffee4fa1abf9da3ae4d79f3ba370610eb914118886a
[INFO] running `Command { std: "docker" "start" "-a" "caf201d19d117e2cb831bffee4fa1abf9da3ae4d79f3ba370610eb914118886a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "caf201d19d117e2cb831bffee4fa1abf9da3ae4d79f3ba370610eb914118886a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "caf201d19d117e2cb831bffee4fa1abf9da3ae4d79f3ba370610eb914118886a", kill_on_drop: false }`
[INFO] [stdout] caf201d19d117e2cb831bffee4fa1abf9da3ae4d79f3ba370610eb914118886a
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c8551d3c63c51f290cf1dc9dc4714249ea849fd1" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 4d899ce9d21f46098e5996b5ccabca8a79d806fecf760a3e1ea0291a35d58225
[INFO] running `Command { std: "docker" "start" "-a" "4d899ce9d21f46098e5996b5ccabca8a79d806fecf760a3e1ea0291a35d58225", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.174
[INFO] [stderr]    Compiling find-msvc-tools v0.1.4
[INFO] [stderr]    Compiling typenum v1.19.0
[INFO] [stderr]     Checking cfg-if v1.0.1
[INFO] [stderr]    Compiling pkg-config v0.3.32
[INFO] [stderr]    Compiling autocfg v1.5.0
[INFO] [stderr]    Compiling zstd-safe v5.0.2+zstd.1.5.2
[INFO] [stderr]    Compiling crc32fast v1.5.0
[INFO] [stderr]    Compiling subtle v2.6.1
[INFO] [stderr]    Compiling memchr v2.7.5
[INFO] [stderr]    Compiling cpufeatures v0.2.17
[INFO] [stderr]     Checking parking v2.2.1
[INFO] [stderr]     Checking concurrent-queue v2.5.0
[INFO] [stderr]    Compiling syn v2.0.104
[INFO] [stderr]    Compiling glob v0.2.11
[INFO] [stderr]     Checking fastrand v2.3.0
[INFO] [stderr]    Compiling simd-adler32 v0.3.7
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling base64ct v1.8.0
[INFO] [stderr]    Compiling adler2 v2.0.1
[INFO] [stderr]    Compiling rustix v1.0.8
[INFO] [stderr]    Compiling powerfmt v0.2.0
[INFO] [stderr]    Compiling regex-syntax v0.8.6
[INFO] [stderr]    Compiling zerocopy v0.8.27
[INFO] [stderr]    Compiling miniz_oxide v0.8.9
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling clang-sys v0.22.0
[INFO] [stderr]    Compiling aho-corasick v1.1.3
[INFO] [stderr]    Compiling deranged v0.5.4
[INFO] [stderr]    Compiling password-hash v0.4.2
[INFO] [stderr]     Checking event-listener v5.4.1
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[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling ucd-util v0.1.10
[INFO] [stderr]     Checking linux-raw-sys v0.9.4
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[INFO] [stderr]    Compiling proc-macro2 v0.3.5
[INFO] [stderr]    Compiling jobserver v0.1.34
[INFO] [stderr]    Compiling atty v0.2.14
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[INFO] [stderr]    Compiling generic-array v0.14.7
[INFO] [stderr]    Compiling nom v3.2.1
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[INFO] [stderr]    Compiling vec_map v0.8.2
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[INFO] [stderr]    Compiling constant_time_eq v0.1.5
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[INFO] [stderr]    Compiling bitflags v1.3.2
[INFO] [stderr]    Compiling termcolor v1.4.1
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[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]    Compiling cfg-if v0.1.10
[INFO] [stderr]    Compiling peeking_take_while v0.1.2
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]    Compiling lock_api v0.4.13
[INFO] [stderr]    Compiling serde_json v1.0.145
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[INFO] [stderr]    Compiling getrandom v0.3.3
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]    Compiling parking_lot_core v0.9.11
[INFO] [stderr]     Checking slab v0.4.10
[INFO] [stderr]     Checking ndarray v0.16.1
[INFO] [stderr]    Compiling syn v0.11.11
[INFO] [stderr]     Checking piper v0.2.4
[INFO] [stderr]     Checking anstyle-parse v0.2.7
[INFO] [stderr]     Checking async-lock v3.4.1
[INFO] [stderr]     Checking async-channel v2.5.0
[INFO] [stderr]    Compiling indexmap v1.9.3
[INFO] [stderr]    Compiling zstd-sys v2.0.16+zstd.1.5.7
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling libloading v0.5.2
[INFO] [stderr]    Compiling derive_builder v0.5.1
[INFO] [stderr]    Compiling thiserror v2.0.17
[INFO] [stderr]     Checking anstyle v1.0.11
[INFO] [stderr]     Checking anstyle-query v1.1.3
[INFO] [stderr]     Checking colorchoice v1.0.4
[INFO] [stderr]     Checking anstream v0.6.19
[INFO] [stderr]    Compiling derive_builder_core v0.2.0
[INFO] [stderr]     Checking blocking v1.6.2
[INFO] [stderr]    Compiling regex v1.11.3
[INFO] [stderr]    Compiling bzip2 v0.4.4
[INFO] [stderr]     Checking async-executor v1.13.2
[INFO] [stderr]    Compiling zerocopy-derive v0.8.27
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling thiserror-impl v2.0.17
[INFO] [stderr]    Compiling env_logger v0.5.13
[INFO] [stderr]    Compiling tch v0.20.0
[INFO] [stderr]     Checking clap_lex v0.7.5
[INFO] [stderr]    Compiling linfa v0.8.0
[INFO] [stderr]     Checking async-channel v1.9.0
[INFO] [stderr]     Checking clap_builder v4.5.42
[INFO] [stderr]    Compiling clap_derive v4.5.41
[INFO] [stderr]     Checking sprs v0.11.3
[INFO] [stderr]    Compiling tokio-macros v2.5.0
[INFO] [stderr]     Checking parking_lot v0.12.4
[INFO] [stderr]     Checking polling v3.10.0
[INFO] [stderr]     Checking thiserror v1.0.69
[INFO] [stderr]     Checking async-io v2.5.0
[INFO] [stderr]     Checking tempfile v3.23.0
[INFO] [stderr]     Checking kv-log-macro v1.0.7
[INFO] [stderr]     Checking mio v1.0.4
[INFO] [stderr]     Checking signal-hook-registry v1.4.5
[INFO] [stderr]     Checking async-global-executor v2.4.1
[INFO] [stderr]     Checking socket2 v0.6.0
[INFO] [stderr]     Checking lazy_static v1.5.0
[INFO] [stderr]     Checking bytes v1.10.1
[INFO] [stderr]     Checking svg v0.7.2
[INFO] [stderr]     Checking async-std v1.13.1
[INFO] [stderr]     Checking tokio v1.47.1
[INFO] [stderr]     Checking format_num v0.1.0
[INFO] [stderr]     Checking charts v0.3.0
[INFO] [stderr]     Checking clap v4.5.42
[INFO] [stderr]     Checking ppv-lite86 v0.2.21
[INFO] [stderr]     Checking half v2.7.0
[INFO] [stderr]     Checking safetensors v0.3.3
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]    Compiling xgboost-sys v0.1.2
[INFO] [stderr]    Compiling zstd v0.11.2+zstd.1.5.2
[INFO] [stderr]     Checking zip v0.6.6
[INFO] [stderr]    Compiling torch-sys v0.20.0
[INFO] [stderr] error: failed to run custom build command for `torch-sys v0.20.0`
[INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation.
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/torch-sys-be14640b039e00c1/build-script-build` (exit status: 1)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   cargo:rerun-if-env-changed=LIBTORCH_USE_PYTORCH
[INFO] [stderr]   cargo:rerun-if-env-changed=LIBTORCH
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   Error: 
[INFO] [stderr]   Cannot find a libtorch install, you can either:
[INFO] [stderr]   - Install libtorch manually and set the LIBTORCH environment variable to appropriate path.
[INFO] [stderr]   - Use a system wide install in /usr/lib/libtorch.so.
[INFO] [stderr]   - Use a Python environment with PyTorch installed by setting LIBTORCH_USE_PYTORCH=1
[INFO] [stderr] 
[INFO] [stderr]   See the readme for more details:
[INFO] [stderr]   https://github.com/LaurentMazare/tch-rs/blob/main/README.md
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr]   Stack backtrace:
[INFO] [stderr]      0: anyhow::kind::Adhoc::new
[INFO] [stderr]      1: build_script_build::SystemInfo::prepare_libtorch_dir
[INFO] [stderr]      2: build_script_build::SystemInfo::new
[INFO] [stderr]      3: build_script_build::main
[INFO] [stderr]      4: core::ops::function::FnOnce::call_once
[INFO] [stderr]      5: std::sys::backtrace::__rust_begin_short_backtrace
[INFO] [stderr]      6: std::rt::lang_start::{{closure}}
[INFO] [stderr]      7: core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once
[INFO] [stderr]                at /rustc/c8551d3c63c51f290cf1dc9dc4714249ea849fd1/library/core/src/ops/function.rs:287:21
[INFO] [stderr]      8: std::panicking::catch_unwind::do_call
[INFO] [stderr]                at /rustc/c8551d3c63c51f290cf1dc9dc4714249ea849fd1/library/std/src/panicking.rs:582:40
[INFO] [stderr]      9: std::panicking::catch_unwind
[INFO] [stderr]                at /rustc/c8551d3c63c51f290cf1dc9dc4714249ea849fd1/library/std/src/panicking.rs:545:19
[INFO] [stderr]     10: std::panic::catch_unwind
[INFO] [stderr]                at /rustc/c8551d3c63c51f290cf1dc9dc4714249ea849fd1/library/std/src/panic.rs:359:14
[INFO] [stderr]     11: std::rt::lang_start_internal::{{closure}}
[INFO] [stderr]                at /rustc/c8551d3c63c51f290cf1dc9dc4714249ea849fd1/library/std/src/rt.rs:175:24
[INFO] [stderr]     12: std::panicking::catch_unwind::do_call
[INFO] [stderr]                at /rustc/c8551d3c63c51f290cf1dc9dc4714249ea849fd1/library/std/src/panicking.rs:582:40
[INFO] [stderr]     13: std::panicking::catch_unwind
[INFO] [stderr]                at /rustc/c8551d3c63c51f290cf1dc9dc4714249ea849fd1/library/std/src/panicking.rs:545:19
[INFO] [stderr]     14: std::panic::catch_unwind
[INFO] [stderr]                at /rustc/c8551d3c63c51f290cf1dc9dc4714249ea849fd1/library/std/src/panic.rs:359:14
[INFO] [stderr]     15: std::rt::lang_start_internal
[INFO] [stderr]                at /rustc/c8551d3c63c51f290cf1dc9dc4714249ea849fd1/library/std/src/rt.rs:171:5
[INFO] [stderr]     16: std::rt::lang_start
[INFO] [stderr]     17: main
[INFO] [stderr]     18: <unknown>
[INFO] [stderr]     19: __libc_start_main
[INFO] [stderr]     20: _start
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] running `Command { std: "docker" "inspect" "4d899ce9d21f46098e5996b5ccabca8a79d806fecf760a3e1ea0291a35d58225", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4d899ce9d21f46098e5996b5ccabca8a79d806fecf760a3e1ea0291a35d58225", kill_on_drop: false }`
[INFO] [stdout] 4d899ce9d21f46098e5996b5ccabca8a79d806fecf760a3e1ea0291a35d58225