[INFO] cloning repository https://github.com/TyberiusPrime/mbf_fastq_processor [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/TyberiusPrime/mbf_fastq_processor" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FTyberiusPrime%2Fmbf_fastq_processor", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FTyberiusPrime%2Fmbf_fastq_processor'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 100dbc3d895c841907406937d612ae753efab4fa [INFO] checking TyberiusPrime/mbf_fastq_processor against master#c8551d3c63c51f290cf1dc9dc4714249ea849fd1 for pr-148946 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FTyberiusPrime%2Fmbf_fastq_processor" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'... [INFO] [stderr] done. [INFO] removed /workspace/builds/worker-5-tc1/source/.cargo/config.toml [INFO] started tweaking git repo https://github.com/TyberiusPrime/mbf_fastq_processor [INFO] finished tweaking git repo https://github.com/TyberiusPrime/mbf_fastq_processor [INFO] tweaked toml for git repo https://github.com/TyberiusPrime/mbf_fastq_processor written to /workspace/builds/worker-5-tc1/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/TyberiusPrime/mbf_fastq_processor on toolchain c8551d3c63c51f290cf1dc9dc4714249ea849fd1 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c8551d3c63c51f290cf1dc9dc4714249ea849fd1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/TyberiusPrime/mbf_fastq_processor already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c8551d3c63c51f290cf1dc9dc4714249ea849fd1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded serde_valid_literal v2.0.0 [INFO] [stderr] Downloaded bio-types v1.0.4 [INFO] [stderr] Downloaded json_value_merge v2.0.1 [INFO] [stderr] Downloaded noodles-core v0.18.0 [INFO] [stderr] Downloaded noodles v0.101.0 [INFO] [stderr] Downloaded scalable_cuckoo_filter v0.4.0 [INFO] [stderr] Downloaded allocation-counter v0.8.1 [INFO] [stderr] Downloaded eserde_derive v0.1.7 [INFO] [stderr] Downloaded eserde v0.1.7 [INFO] [stderr] Downloaded lexical-write-integer v1.0.6 [INFO] [stderr] Downloaded noodles-bam v0.83.0 [INFO] [stderr] Downloaded lexical-write-float v1.0.6 [INFO] [stderr] Downloaded lexical-util v1.0.7 [INFO] [stderr] Downloaded noodles-sam v0.79.0 [INFO] [stderr] Downloaded niffler v3.0.0 [INFO] [stderr] Downloaded noodles-bgzf v0.43.0 [INFO] [stderr] Downloaded human-panic v2.0.4 [INFO] [stderr] Downloaded bio v3.0.0 [INFO] [stderr] Downloaded lexical-parse-float v1.0.6 [INFO] [stderr] Downloaded zlib-rs v0.5.2 [INFO] [stderr] Downloaded fasteval v0.2.4 [INFO] [stderr] Downloaded bgzip v0.3.1 [INFO] [stderr] Downloaded liblzma v0.3.6 [INFO] [stderr] Downloaded lexical-parse-integer v1.0.6 [INFO] [stderr] Downloaded bstr v1.12.1 [INFO] [stderr] Downloaded lexical-core v1.0.6 [INFO] [stderr] Downloaded libz-rs-sys v0.5.2 [INFO] [stderr] Downloaded noodles-csi v0.51.0 [INFO] [stderr] Downloaded editdistancek v1.0.2 [INFO] [stderr] Downloaded getset v0.1.6 [INFO] [stderr] Downloaded ordered-float v5.1.0 [INFO] [stderr] Downloaded triple_accel v0.4.0 [INFO] [stderr] Downloaded csv-core v0.1.13 [INFO] [stderr] Downloaded schemars v1.1.0 [INFO] [stderr] Downloaded serde_valid_derive v2.0.0 [INFO] [stderr] Downloaded serde_valid v2.0.0 [INFO] [stderr] Downloaded derefable v0.1.0 [INFO] [stderr] Downloaded itertools-num v0.1.3 [INFO] [stderr] Downloaded newtype_derive v0.1.6 [INFO] [stderr] Downloaded ex v0.1.3 [INFO] [stderr] Downloaded schemars_derive v1.1.0 [INFO] [stderr] Downloaded liblzma-sys v0.3.13 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c8551d3c63c51f290cf1dc9dc4714249ea849fd1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 1b891c79b6143729359c495ba66c6b8367e9f17bd6756874b8d1172ab61124b4 [INFO] running `Command { std: "docker" "start" "-a" "1b891c79b6143729359c495ba66c6b8367e9f17bd6756874b8d1172ab61124b4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "1b891c79b6143729359c495ba66c6b8367e9f17bd6756874b8d1172ab61124b4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1b891c79b6143729359c495ba66c6b8367e9f17bd6756874b8d1172ab61124b4", kill_on_drop: false }` [INFO] [stdout] 1b891c79b6143729359c495ba66c6b8367e9f17bd6756874b8d1172ab61124b4 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c8551d3c63c51f290cf1dc9dc4714249ea849fd1" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 0ae9204eb9b0be99dfa606400c3ec656c07acbe03f6b9b1f3082f5605daf0040 [INFO] running `Command { std: "docker" "start" "-a" "0ae9204eb9b0be99dfa606400c3ec656c07acbe03f6b9b1f3082f5605daf0040", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.103 [INFO] [stderr] Compiling unicode-ident v1.0.22 [INFO] [stderr] Compiling quote v1.0.42 [INFO] [stderr] Compiling serde_core v1.0.228 [INFO] [stderr] Checking cfg-if v1.0.4 [INFO] [stderr] Compiling libc v0.2.177 [INFO] [stderr] Checking memchr v2.7.6 [INFO] [stderr] Compiling autocfg v1.5.0 [INFO] [stderr] Compiling crossbeam-utils v0.8.21 [INFO] [stderr] Compiling find-msvc-tools v0.1.4 [INFO] [stderr] Compiling serde v1.0.228 [INFO] [stderr] Checking hashbrown v0.16.0 [INFO] [stderr] Compiling zerocopy v0.8.27 [INFO] [stderr] Checking adler2 v2.0.1 [INFO] [stderr] Checking simd-adler32 v0.3.7 [INFO] [stderr] Compiling typenum v1.19.0 [INFO] [stderr] Compiling crc32fast v1.5.0 [INFO] [stderr] Compiling paste v1.0.15 [INFO] [stderr] Checking zlib-rs v0.5.2 [INFO] [stderr] Checking miniz_oxide v0.8.9 [INFO] [stderr] Checking bitflags v2.10.0 [INFO] [stderr] Compiling getrandom v0.3.4 [INFO] [stderr] Checking lexical-util v1.0.7 [INFO] [stderr] Checking winnow v0.7.13 [INFO] [stderr] Compiling generic-array v0.14.7 [INFO] [stderr] Checking aho-corasick v1.1.4 [INFO] [stderr] Checking crossbeam-channel v0.5.15 [INFO] [stderr] Checking crossbeam-epoch v0.9.18 [INFO] [stderr] Checking bytemuck v1.24.0 [INFO] [stderr] Checking regex-syntax v0.8.8 [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Checking either v1.15.0 [INFO] [stderr] Checking crossbeam-deque v0.8.6 [INFO] [stderr] Checking libz-rs-sys v0.5.2 [INFO] [stderr] Checking safe_arch v0.7.4 [INFO] [stderr] Checking lexical-write-integer v1.0.6 [INFO] [stderr] Compiling syn v2.0.110 [INFO] [stderr] Checking flate2 v1.1.5 [INFO] [stderr] Checking lexical-parse-integer v1.0.6 [INFO] [stderr] Checking bstr v1.12.1 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Compiling rayon-core v1.13.0 [INFO] [stderr] Compiling rustversion v1.0.22 [INFO] [stderr] Compiling serde_json v1.0.145 [INFO] [stderr] Checking bytes v1.10.1 [INFO] [stderr] Compiling unicode-xid v0.1.0 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Checking getrandom v0.2.16 [INFO] [stderr] Compiling jobserver v0.1.34 [INFO] [stderr] Checking rand_core v0.6.4 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling cc v1.2.45 [INFO] [stderr] Checking indexmap v2.12.0 [INFO] [stderr] Checking noodles-core v0.18.0 [INFO] [stderr] Compiling nix v0.30.1 [INFO] [stderr] Checking noodles-bgzf v0.43.0 [INFO] [stderr] Checking lexical-parse-float v1.0.6 [INFO] [stderr] Checking lexical-write-float v1.0.6 [INFO] [stderr] Checking wide v0.7.33 [INFO] [stderr] Checking num-complex v0.4.6 [INFO] [stderr] Checking ppv-lite86 v0.2.21 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking regex-automata v0.4.13 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Compiling zstd-safe v7.2.4 [INFO] [stderr] Compiling proc-macro-error-attr2 v2.0.0 [INFO] [stderr] Compiling object v0.37.3 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling syn v0.15.44 [INFO] [stderr] Compiling thiserror v2.0.17 [INFO] [stderr] Checking log v0.4.28 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Checking lexical-core v1.0.6 [INFO] [stderr] Checking noodles-csi v0.51.0 [INFO] [stderr] Checking num-rational v0.4.2 [INFO] [stderr] Checking toml_parser v1.0.4 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking toml_datetime v0.7.3 [INFO] [stderr] Checking rand_core v0.9.3 [INFO] [stderr] Compiling quote v0.6.13 [INFO] [stderr] Checking foldhash v0.1.5 [INFO] [stderr] Compiling anyhow v1.0.100 [INFO] [stderr] Checking toml_write v0.1.2 [INFO] [stderr] Checking gimli v0.32.3 [INFO] [stderr] Compiling ref-cast v1.0.25 [INFO] [stderr] Checking toml_writer v1.0.4 [INFO] [stderr] Compiling rustix v1.1.2 [INFO] [stderr] Checking rayon v1.11.0 [INFO] [stderr] Compiling itertools v0.14.0 [INFO] [stderr] Checking hashbrown v0.15.5 [INFO] [stderr] Checking regex v1.12.2 [INFO] [stderr] Checking rand_chacha v0.9.0 [INFO] [stderr] Checking noodles-sam v0.79.0 [INFO] [stderr] Checking block-buffer v0.10.4 [INFO] [stderr] Checking simba v0.9.1 [INFO] [stderr] Checking crypto-common v0.1.7 [INFO] [stderr] Checking serde_spanned v1.0.3 [INFO] [stderr] Checking csv-core v0.1.13 [INFO] [stderr] Checking linux-raw-sys v0.11.0 [INFO] [stderr] Checking clap_lex v0.7.6 [INFO] [stderr] Compiling strsim v0.11.1 [INFO] [stderr] Checking anstyle v1.0.13 [INFO] [stderr] Checking rustc-demangle v0.1.26 [INFO] [stderr] Checking fixedbitset v0.5.7 [INFO] [stderr] Checking clap_builder v4.5.51 [INFO] [stderr] Checking petgraph v0.8.3 [INFO] [stderr] Checking csv v1.4.0 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Checking toml v0.9.8 [INFO] [stderr] Checking digest v0.10.7 [INFO] [stderr] Checking serde_valid_literal v2.0.0 [INFO] [stderr] Checking rand v0.9.2 [INFO] [stderr] Checking noodles-bam v0.83.0 [INFO] [stderr] Checking ndarray v0.16.1 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking ordered-float v5.1.0 [INFO] [stderr] Checking uuid v1.18.1 [INFO] [stderr] Checking crossbeam-queue v0.3.12 [INFO] [stderr] Compiling once_cell v1.21.3 [INFO] [stderr] Checking bytecount v0.6.9 [INFO] [stderr] Checking strum v0.26.3 [INFO] [stderr] Checking cpufeatures v0.2.17 [INFO] [stderr] Checking editdistancek v1.0.2 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking siphasher v1.0.1 [INFO] [stderr] Checking triple_accel v0.4.0 [INFO] [stderr] Checking quick-error v1.2.3 [INFO] [stderr] Checking dyn-clone v1.0.20 [INFO] [stderr] Checking ex v0.1.3 [INFO] [stderr] Checking sha2 v0.10.9 [INFO] [stderr] Checking noodles v0.101.0 [INFO] [stderr] Checking crossbeam v0.8.4 [INFO] [stderr] Checking json_value_merge v2.0.1 [INFO] [stderr] Compiling proc-macro-error2 v2.0.1 [INFO] [stderr] Checking addr2line v0.25.1 [INFO] [stderr] Compiling serde_derive_internals v0.29.1 [INFO] [stderr] Checking scalable_cuckoo_filter v0.4.0 [INFO] [stderr] Checking toml_edit v0.23.7 [INFO] [stderr] Checking allocation-counter v0.8.1 [INFO] [stderr] Checking fasteval v0.2.4 [INFO] [stderr] Checking tempfile v3.23.0 [INFO] [stderr] Checking walkdir v2.5.0 [INFO] [stderr] Checking wait-timeout v0.2.1 [INFO] [stderr] Checking clap v4.5.51 [INFO] [stderr] Checking backtrace v0.3.76 [INFO] [stderr] Compiling zstd-sys v2.0.16+zstd.1.5.7 [INFO] [stderr] Compiling bzip2-sys v0.1.13+1.0.8 [INFO] [stderr] Compiling liblzma-sys v0.3.13 [INFO] [stderr] Compiling derefable v0.1.0 [INFO] [stderr] Checking nalgebra v0.33.2 [INFO] [stderr] Compiling serde_derive v1.0.228 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling thiserror-impl v2.0.17 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Compiling ref-cast-impl v1.0.25 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Checking bzip2 v0.5.2 [INFO] [stderr] Compiling schemars_derive v1.1.0 [INFO] [stderr] Compiling serde_valid_derive v2.0.0 [INFO] [stderr] Checking liblzma v0.3.6 [INFO] [stderr] Compiling getset v0.1.6 [INFO] [stderr] Compiling eserde_derive v0.1.7 [INFO] [stderr] Checking statrs v0.18.0 [INFO] [stderr] Compiling enum_dispatch v0.3.13 [INFO] [stderr] Compiling strum_macros v0.27.2 [INFO] [stderr] Checking enum-map v2.7.3 [INFO] [stderr] Checking thiserror v1.0.69 [INFO] [stderr] Checking bgzip v0.3.1 [INFO] [stderr] Checking bio-types v1.0.4 [INFO] [stderr] Checking toml_datetime v0.6.11 [INFO] [stderr] Checking serde_spanned v0.6.9 [INFO] [stderr] Checking multimap v0.10.1 [INFO] [stderr] Checking os_info v3.13.0 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking schemars v1.1.0 [INFO] [stderr] Checking serde_valid v2.0.0 [INFO] [stderr] Checking toml_edit v0.22.27 [INFO] [stderr] Checking human-panic v2.0.4 [INFO] [stderr] Checking bio v3.0.0 [INFO] [stderr] Checking zstd v0.13.3 [INFO] [stderr] Checking niffler v3.0.0 [INFO] [stderr] Checking toml v0.8.23 [INFO] [stderr] Checking eserde v0.1.7 [INFO] [stderr] Checking mbf-fastq-processor v0.8.1 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 4m 07s [INFO] running `Command { std: "docker" "inspect" "0ae9204eb9b0be99dfa606400c3ec656c07acbe03f6b9b1f3082f5605daf0040", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0ae9204eb9b0be99dfa606400c3ec656c07acbe03f6b9b1f3082f5605daf0040", kill_on_drop: false }` [INFO] [stdout] 0ae9204eb9b0be99dfa606400c3ec656c07acbe03f6b9b1f3082f5605daf0040