[INFO] cloning repository https://github.com/TyberiusPrime/mbf_fastq_processor
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/TyberiusPrime/mbf_fastq_processor" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FTyberiusPrime%2Fmbf_fastq_processor", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FTyberiusPrime%2Fmbf_fastq_processor'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 100dbc3d895c841907406937d612ae753efab4fa
[INFO] checking TyberiusPrime/mbf_fastq_processor against master#c8551d3c63c51f290cf1dc9dc4714249ea849fd1 for pr-148946
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FTyberiusPrime%2Fmbf_fastq_processor" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'...
[INFO] [stderr] done.
[INFO] removed /workspace/builds/worker-5-tc1/source/.cargo/config.toml
[INFO] started tweaking git repo https://github.com/TyberiusPrime/mbf_fastq_processor
[INFO] finished tweaking git repo https://github.com/TyberiusPrime/mbf_fastq_processor
[INFO] tweaked toml for git repo https://github.com/TyberiusPrime/mbf_fastq_processor written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/TyberiusPrime/mbf_fastq_processor on toolchain c8551d3c63c51f290cf1dc9dc4714249ea849fd1
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c8551d3c63c51f290cf1dc9dc4714249ea849fd1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/TyberiusPrime/mbf_fastq_processor already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c8551d3c63c51f290cf1dc9dc4714249ea849fd1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded serde_valid_literal v2.0.0
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded json_value_merge v2.0.1
[INFO] [stderr]   Downloaded noodles-core v0.18.0
[INFO] [stderr]   Downloaded noodles v0.101.0
[INFO] [stderr]   Downloaded scalable_cuckoo_filter v0.4.0
[INFO] [stderr]   Downloaded allocation-counter v0.8.1
[INFO] [stderr]   Downloaded eserde_derive v0.1.7
[INFO] [stderr]   Downloaded eserde v0.1.7
[INFO] [stderr]   Downloaded lexical-write-integer v1.0.6
[INFO] [stderr]   Downloaded noodles-bam v0.83.0
[INFO] [stderr]   Downloaded lexical-write-float v1.0.6
[INFO] [stderr]   Downloaded lexical-util v1.0.7
[INFO] [stderr]   Downloaded noodles-sam v0.79.0
[INFO] [stderr]   Downloaded niffler v3.0.0
[INFO] [stderr]   Downloaded noodles-bgzf v0.43.0
[INFO] [stderr]   Downloaded human-panic v2.0.4
[INFO] [stderr]   Downloaded bio v3.0.0
[INFO] [stderr]   Downloaded lexical-parse-float v1.0.6
[INFO] [stderr]   Downloaded zlib-rs v0.5.2
[INFO] [stderr]   Downloaded fasteval v0.2.4
[INFO] [stderr]   Downloaded bgzip v0.3.1
[INFO] [stderr]   Downloaded liblzma v0.3.6
[INFO] [stderr]   Downloaded lexical-parse-integer v1.0.6
[INFO] [stderr]   Downloaded bstr v1.12.1
[INFO] [stderr]   Downloaded lexical-core v1.0.6
[INFO] [stderr]   Downloaded libz-rs-sys v0.5.2
[INFO] [stderr]   Downloaded noodles-csi v0.51.0
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded getset v0.1.6
[INFO] [stderr]   Downloaded ordered-float v5.1.0
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded csv-core v0.1.13
[INFO] [stderr]   Downloaded schemars v1.1.0
[INFO] [stderr]   Downloaded serde_valid_derive v2.0.0
[INFO] [stderr]   Downloaded serde_valid v2.0.0
[INFO] [stderr]   Downloaded derefable v0.1.0
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded ex v0.1.3
[INFO] [stderr]   Downloaded schemars_derive v1.1.0
[INFO] [stderr]   Downloaded liblzma-sys v0.3.13
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c8551d3c63c51f290cf1dc9dc4714249ea849fd1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 1b891c79b6143729359c495ba66c6b8367e9f17bd6756874b8d1172ab61124b4
[INFO] running `Command { std: "docker" "start" "-a" "1b891c79b6143729359c495ba66c6b8367e9f17bd6756874b8d1172ab61124b4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "1b891c79b6143729359c495ba66c6b8367e9f17bd6756874b8d1172ab61124b4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "1b891c79b6143729359c495ba66c6b8367e9f17bd6756874b8d1172ab61124b4", kill_on_drop: false }`
[INFO] [stdout] 1b891c79b6143729359c495ba66c6b8367e9f17bd6756874b8d1172ab61124b4
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c8551d3c63c51f290cf1dc9dc4714249ea849fd1" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 0ae9204eb9b0be99dfa606400c3ec656c07acbe03f6b9b1f3082f5605daf0040
[INFO] running `Command { std: "docker" "start" "-a" "0ae9204eb9b0be99dfa606400c3ec656c07acbe03f6b9b1f3082f5605daf0040", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.103
[INFO] [stderr]    Compiling unicode-ident v1.0.22
[INFO] [stderr]    Compiling quote v1.0.42
[INFO] [stderr]    Compiling serde_core v1.0.228
[INFO] [stderr]     Checking cfg-if v1.0.4
[INFO] [stderr]    Compiling libc v0.2.177
[INFO] [stderr]     Checking memchr v2.7.6
[INFO] [stderr]    Compiling autocfg v1.5.0
[INFO] [stderr]    Compiling crossbeam-utils v0.8.21
[INFO] [stderr]    Compiling find-msvc-tools v0.1.4
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]     Checking hashbrown v0.16.0
[INFO] [stderr]    Compiling zerocopy v0.8.27
[INFO] [stderr]     Checking adler2 v2.0.1
[INFO] [stderr]     Checking simd-adler32 v0.3.7
[INFO] [stderr]    Compiling typenum v1.19.0
[INFO] [stderr]    Compiling crc32fast v1.5.0
[INFO] [stderr]    Compiling paste v1.0.15
[INFO] [stderr]     Checking zlib-rs v0.5.2
[INFO] [stderr]     Checking miniz_oxide v0.8.9
[INFO] [stderr]     Checking bitflags v2.10.0
[INFO] [stderr]    Compiling getrandom v0.3.4
[INFO] [stderr]     Checking lexical-util v1.0.7
[INFO] [stderr]     Checking winnow v0.7.13
[INFO] [stderr]    Compiling generic-array v0.14.7
[INFO] [stderr]     Checking aho-corasick v1.1.4
[INFO] [stderr]     Checking crossbeam-channel v0.5.15
[INFO] [stderr]     Checking crossbeam-epoch v0.9.18
[INFO] [stderr]     Checking bytemuck v1.24.0
[INFO] [stderr]     Checking regex-syntax v0.8.8
[INFO] [stderr]    Compiling proc-macro2 v0.4.30
[INFO] [stderr]     Checking either v1.15.0
[INFO] [stderr]     Checking crossbeam-deque v0.8.6
[INFO] [stderr]     Checking libz-rs-sys v0.5.2
[INFO] [stderr]     Checking safe_arch v0.7.4
[INFO] [stderr]     Checking lexical-write-integer v1.0.6
[INFO] [stderr]    Compiling syn v2.0.110
[INFO] [stderr]     Checking flate2 v1.1.5
[INFO] [stderr]     Checking lexical-parse-integer v1.0.6
[INFO] [stderr]     Checking bstr v1.12.1
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]    Compiling rayon-core v1.13.0
[INFO] [stderr]    Compiling rustversion v1.0.22
[INFO] [stderr]    Compiling serde_json v1.0.145
[INFO] [stderr]     Checking bytes v1.10.1
[INFO] [stderr]    Compiling unicode-xid v0.1.0
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]     Checking getrandom v0.2.16
[INFO] [stderr]    Compiling jobserver v0.1.34
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling cc v1.2.45
[INFO] [stderr]     Checking indexmap v2.12.0
[INFO] [stderr]     Checking noodles-core v0.18.0
[INFO] [stderr]    Compiling nix v0.30.1
[INFO] [stderr]     Checking noodles-bgzf v0.43.0
[INFO] [stderr]     Checking lexical-parse-float v1.0.6
[INFO] [stderr]     Checking lexical-write-float v1.0.6
[INFO] [stderr]     Checking wide v0.7.33
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking ppv-lite86 v0.2.21
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking regex-automata v0.4.13
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]    Compiling zstd-safe v7.2.4
[INFO] [stderr]    Compiling proc-macro-error-attr2 v2.0.0
[INFO] [stderr]    Compiling object v0.37.3
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling syn v0.15.44
[INFO] [stderr]    Compiling thiserror v2.0.17
[INFO] [stderr]     Checking log v0.4.28
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]     Checking lexical-core v1.0.6
[INFO] [stderr]     Checking noodles-csi v0.51.0
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]     Checking toml_parser v1.0.4
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking toml_datetime v0.7.3
[INFO] [stderr]     Checking rand_core v0.9.3
[INFO] [stderr]    Compiling quote v0.6.13
[INFO] [stderr]     Checking foldhash v0.1.5
[INFO] [stderr]    Compiling anyhow v1.0.100
[INFO] [stderr]     Checking toml_write v0.1.2
[INFO] [stderr]     Checking gimli v0.32.3
[INFO] [stderr]    Compiling ref-cast v1.0.25
[INFO] [stderr]     Checking toml_writer v1.0.4
[INFO] [stderr]    Compiling rustix v1.1.2
[INFO] [stderr]     Checking rayon v1.11.0
[INFO] [stderr]    Compiling itertools v0.14.0
[INFO] [stderr]     Checking hashbrown v0.15.5
[INFO] [stderr]     Checking regex v1.12.2
[INFO] [stderr]     Checking rand_chacha v0.9.0
[INFO] [stderr]     Checking noodles-sam v0.79.0
[INFO] [stderr]     Checking block-buffer v0.10.4
[INFO] [stderr]     Checking simba v0.9.1
[INFO] [stderr]     Checking crypto-common v0.1.7
[INFO] [stderr]     Checking serde_spanned v1.0.3
[INFO] [stderr]     Checking csv-core v0.1.13
[INFO] [stderr]     Checking linux-raw-sys v0.11.0
[INFO] [stderr]     Checking clap_lex v0.7.6
[INFO] [stderr]    Compiling strsim v0.11.1
[INFO] [stderr]     Checking anstyle v1.0.13
[INFO] [stderr]     Checking rustc-demangle v0.1.26
[INFO] [stderr]     Checking fixedbitset v0.5.7
[INFO] [stderr]     Checking clap_builder v4.5.51
[INFO] [stderr]     Checking petgraph v0.8.3
[INFO] [stderr]     Checking csv v1.4.0
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking toml v0.9.8
[INFO] [stderr]     Checking digest v0.10.7
[INFO] [stderr]     Checking serde_valid_literal v2.0.0
[INFO] [stderr]     Checking rand v0.9.2
[INFO] [stderr]     Checking noodles-bam v0.83.0
[INFO] [stderr]     Checking ndarray v0.16.1
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking ordered-float v5.1.0
[INFO] [stderr]     Checking uuid v1.18.1
[INFO] [stderr]     Checking crossbeam-queue v0.3.12
[INFO] [stderr]    Compiling once_cell v1.21.3
[INFO] [stderr]     Checking bytecount v0.6.9
[INFO] [stderr]     Checking strum v0.26.3
[INFO] [stderr]     Checking cpufeatures v0.2.17
[INFO] [stderr]     Checking editdistancek v1.0.2
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking siphasher v1.0.1
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]     Checking quick-error v1.2.3
[INFO] [stderr]     Checking dyn-clone v1.0.20
[INFO] [stderr]     Checking ex v0.1.3
[INFO] [stderr]     Checking sha2 v0.10.9
[INFO] [stderr]     Checking noodles v0.101.0
[INFO] [stderr]     Checking crossbeam v0.8.4
[INFO] [stderr]     Checking json_value_merge v2.0.1
[INFO] [stderr]    Compiling proc-macro-error2 v2.0.1
[INFO] [stderr]     Checking addr2line v0.25.1
[INFO] [stderr]    Compiling serde_derive_internals v0.29.1
[INFO] [stderr]     Checking scalable_cuckoo_filter v0.4.0
[INFO] [stderr]     Checking toml_edit v0.23.7
[INFO] [stderr]     Checking allocation-counter v0.8.1
[INFO] [stderr]     Checking fasteval v0.2.4
[INFO] [stderr]     Checking tempfile v3.23.0
[INFO] [stderr]     Checking walkdir v2.5.0
[INFO] [stderr]     Checking wait-timeout v0.2.1
[INFO] [stderr]     Checking clap v4.5.51
[INFO] [stderr]     Checking backtrace v0.3.76
[INFO] [stderr]    Compiling zstd-sys v2.0.16+zstd.1.5.7
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling liblzma-sys v0.3.13
[INFO] [stderr]    Compiling derefable v0.1.0
[INFO] [stderr]     Checking nalgebra v0.33.2
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling thiserror-impl v2.0.17
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling ref-cast-impl v1.0.25
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]     Checking bzip2 v0.5.2
[INFO] [stderr]    Compiling schemars_derive v1.1.0
[INFO] [stderr]    Compiling serde_valid_derive v2.0.0
[INFO] [stderr]     Checking liblzma v0.3.6
[INFO] [stderr]    Compiling getset v0.1.6
[INFO] [stderr]    Compiling eserde_derive v0.1.7
[INFO] [stderr]     Checking statrs v0.18.0
[INFO] [stderr]    Compiling enum_dispatch v0.3.13
[INFO] [stderr]    Compiling strum_macros v0.27.2
[INFO] [stderr]     Checking enum-map v2.7.3
[INFO] [stderr]     Checking thiserror v1.0.69
[INFO] [stderr]     Checking bgzip v0.3.1
[INFO] [stderr]     Checking bio-types v1.0.4
[INFO] [stderr]     Checking toml_datetime v0.6.11
[INFO] [stderr]     Checking serde_spanned v0.6.9
[INFO] [stderr]     Checking multimap v0.10.1
[INFO] [stderr]     Checking os_info v3.13.0
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking schemars v1.1.0
[INFO] [stderr]     Checking serde_valid v2.0.0
[INFO] [stderr]     Checking toml_edit v0.22.27
[INFO] [stderr]     Checking human-panic v2.0.4
[INFO] [stderr]     Checking bio v3.0.0
[INFO] [stderr]     Checking zstd v0.13.3
[INFO] [stderr]     Checking niffler v3.0.0
[INFO] [stderr]     Checking toml v0.8.23
[INFO] [stderr]     Checking eserde v0.1.7
[INFO] [stderr]     Checking mbf-fastq-processor v0.8.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 4m 07s
[INFO] running `Command { std: "docker" "inspect" "0ae9204eb9b0be99dfa606400c3ec656c07acbe03f6b9b1f3082f5605daf0040", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0ae9204eb9b0be99dfa606400c3ec656c07acbe03f6b9b1f3082f5605daf0040", kill_on_drop: false }`
[INFO] [stdout] 0ae9204eb9b0be99dfa606400c3ec656c07acbe03f6b9b1f3082f5605daf0040
