[INFO] cloning repository https://github.com/ViralSeq/viRust-splicing [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/ViralSeq/viRust-splicing" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FViralSeq%2FviRust-splicing", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FViralSeq%2FviRust-splicing'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 99cae1fbb96ebd2437983e4b3ff8f3a3a225ea46 [INFO] checking ViralSeq/viRust-splicing/99cae1fbb96ebd2437983e4b3ff8f3a3a225ea46 against master#217cb73577ed6f30a2005dd75bab01d23ec4cd60 for pr-148939 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FViralSeq%2FviRust-splicing" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc1/source'... [INFO] [stderr] done. [INFO] removed /workspace/builds/worker-2-tc1/source/rust-toolchain [INFO] started tweaking git repo https://github.com/ViralSeq/viRust-splicing [INFO] finished tweaking git repo https://github.com/ViralSeq/viRust-splicing [INFO] tweaked toml for git repo https://github.com/ViralSeq/viRust-splicing written to /workspace/builds/worker-2-tc1/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/ViralSeq/viRust-splicing on toolchain 217cb73577ed6f30a2005dd75bab01d23ec4cd60 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+217cb73577ed6f30a2005dd75bab01d23ec4cd60" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/ViralSeq/viRust-splicing already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+217cb73577ed6f30a2005dd75bab01d23ec4cd60" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded derefable v0.1.0 [INFO] [stderr] Downloaded wasi v0.14.7+wasi-0.2.4 [INFO] [stderr] Downloaded wasm-bindgen-macro v0.2.103 [INFO] [stderr] Downloaded bytecount v0.6.9 [INFO] [stderr] Downloaded wasm-bindgen-backend v0.2.103 [INFO] [stderr] Downloaded wasm-bindgen-macro-support v0.2.103 [INFO] [stderr] Downloaded ordered-float v5.0.0 [INFO] [stderr] Downloaded derive-new v0.6.0 [INFO] [stderr] Downloaded flate2 v1.1.4 [INFO] [stderr] Downloaded enum-map-derive v0.17.0 [INFO] [stderr] Downloaded bio-types v1.0.4 [INFO] [stderr] Downloaded itertools-num v0.1.3 [INFO] [stderr] Downloaded triple_accel v0.4.0 [INFO] [stderr] Downloaded pest_derive v2.8.2 [INFO] [stderr] Downloaded toml v0.9.7 [INFO] [stderr] Downloaded config v0.15.18 [INFO] [stderr] Downloaded cc v1.2.38 [INFO] [stderr] Downloaded ndarray v0.16.1 [INFO] [stderr] Downloaded statrs v0.18.0 [INFO] [stderr] Downloaded half v2.6.0 [INFO] [stderr] Downloaded criterion v0.7.0 [INFO] [stderr] Downloaded regex-syntax v0.8.7 [INFO] [stderr] Downloaded clap_builder v4.5.49 [INFO] [stderr] Downloaded pest v2.8.2 [INFO] [stderr] Downloaded clap v4.5.49 [INFO] [stderr] Downloaded bytemuck v1.23.2 [INFO] [stderr] Downloaded nalgebra v0.33.2 [INFO] [stderr] Downloaded bio v3.0.0 [INFO] [stderr] Downloaded pest_meta v2.8.2 [INFO] [stderr] Downloaded rustc_version v0.1.7 [INFO] [stderr] Downloaded toml_parser v1.0.3 [INFO] [stderr] Downloaded csv-core v0.1.12 [INFO] [stderr] Downloaded dwrote v0.11.4 [INFO] [stderr] Downloaded web-sys v0.3.80 [INFO] [stderr] Downloaded font-kit v0.14.3 [INFO] [stderr] Downloaded pathfinder_simd v0.5.5 [INFO] [stderr] Downloaded enum-map v2.7.3 [INFO] [stderr] Downloaded newtype_derive v0.1.6 [INFO] [stderr] Downloaded dlv-list v0.5.2 [INFO] [stderr] Downloaded criterion-plot v0.6.0 [INFO] [stderr] Downloaded getset v0.1.6 [INFO] [stderr] Downloaded windows-result v0.4.0 [INFO] [stderr] Downloaded core-text v20.1.0 [INFO] [stderr] Downloaded find-msvc-tools v0.1.2 [INFO] [stderr] Downloaded yeslogic-fontconfig-sys v6.0.0 [INFO] [stderr] Downloaded petgraph v0.8.2 [INFO] [stderr] Downloaded jpeg-decoder v0.3.2 [INFO] [stderr] Downloaded pest_generator v2.8.2 [INFO] [stderr] Downloaded ordered-multimap v0.7.3 [INFO] [stderr] Downloaded yaml-rust2 v0.10.4 [INFO] [stderr] Downloaded windows-core v0.62.0 [INFO] [stderr] Downloaded js-sys v0.3.80 [INFO] [stderr] Downloaded wasm-bindgen v0.2.103 [INFO] [stderr] Downloaded editdistancek v1.0.2 [INFO] [stderr] Downloaded semver v0.1.20 [INFO] [stderr] Downloaded colored v3.0.0 [INFO] [stderr] Downloaded serde-untagged v0.1.9 [INFO] [stderr] Downloaded serde_spanned v1.0.2 [INFO] [stderr] Downloaded toml_datetime v0.7.2 [INFO] [stderr] Downloaded windows-strings v0.5.0 [INFO] [stderr] Downloaded oorandom v11.1.5 [INFO] [stderr] Downloaded rust-ini v0.21.3 [INFO] [stderr] Downloaded float-ord v0.3.2 [INFO] [stderr] Downloaded plotters-bitmap v0.3.7 [INFO] [stderr] Downloaded wasm-bindgen-shared v0.2.103 [INFO] [stderr] Downloaded freetype-sys v0.20.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:94a0c148923f5b2b52a63ef0eeb1882ad339ab61bce784c8077cbe41c61feb6c" "/opt/rustwide/cargo-home/bin/cargo" "+217cb73577ed6f30a2005dd75bab01d23ec4cd60" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 21b3581b5b3eb5d34b37ff4c291cc95c6e4174dfd7faefaa65d9357e9c1edfaa [INFO] running `Command { std: "docker" "start" "-a" "21b3581b5b3eb5d34b37ff4c291cc95c6e4174dfd7faefaa65d9357e9c1edfaa", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "21b3581b5b3eb5d34b37ff4c291cc95c6e4174dfd7faefaa65d9357e9c1edfaa", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "21b3581b5b3eb5d34b37ff4c291cc95c6e4174dfd7faefaa65d9357e9c1edfaa", kill_on_drop: false }` [INFO] [stdout] 21b3581b5b3eb5d34b37ff4c291cc95c6e4174dfd7faefaa65d9357e9c1edfaa [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:94a0c148923f5b2b52a63ef0eeb1882ad339ab61bce784c8077cbe41c61feb6c" "/opt/rustwide/cargo-home/bin/cargo" "+217cb73577ed6f30a2005dd75bab01d23ec4cd60" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] b4a2d39c29571aa3db7c6616d57e7d379847515b66ab3268891097a3d283e2c5 [INFO] running `Command { std: "docker" "start" "-a" "b4a2d39c29571aa3db7c6616d57e7d379847515b66ab3268891097a3d283e2c5", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.101 [INFO] [stderr] Compiling unicode-ident v1.0.19 [INFO] [stderr] Checking cfg-if v1.0.3 [INFO] [stderr] Compiling autocfg v1.5.0 [INFO] [stderr] Compiling serde_core v1.0.228 [INFO] [stderr] Compiling libm v0.2.15 [INFO] [stderr] Compiling libc v0.2.175 [INFO] [stderr] Compiling serde v1.0.228 [INFO] [stderr] Checking memchr v2.7.6 [INFO] [stderr] Compiling zerocopy v0.8.27 [INFO] [stderr] Compiling thiserror v2.0.16 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Checking bytemuck v1.23.2 [INFO] [stderr] Compiling crunchy v0.2.4 [INFO] [stderr] Checking simd-adler32 v0.3.7 [INFO] [stderr] Compiling find-msvc-tools v0.1.2 [INFO] [stderr] Compiling tiny-keccak v2.0.2 [INFO] [stderr] Compiling quote v1.0.41 [INFO] [stderr] Compiling crc32fast v1.5.0 [INFO] [stderr] Compiling semver v1.0.27 [INFO] [stderr] Compiling syn v2.0.106 [INFO] [stderr] Compiling cc v1.2.38 [INFO] [stderr] Checking getrandom v0.2.16 [INFO] [stderr] Compiling rustc_version v0.4.1 [INFO] [stderr] Checking equivalent v1.0.2 [INFO] [stderr] Checking adler2 v2.0.1 [INFO] [stderr] Checking miniz_oxide v0.8.9 [INFO] [stderr] Compiling pathfinder_simd v0.5.5 [INFO] [stderr] Checking rand_core v0.6.4 [INFO] [stderr] Compiling yeslogic-fontconfig-sys v6.0.0 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Compiling once_cell v1.21.3 [INFO] [stderr] Checking either v1.15.0 [INFO] [stderr] Compiling getrandom v0.3.3 [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Checking foldhash v0.1.5 [INFO] [stderr] Compiling paste v1.0.15 [INFO] [stderr] Compiling ucd-trie v0.1.7 [INFO] [stderr] Checking hashbrown v0.15.5 [INFO] [stderr] Compiling const-random-macro v0.1.16 [INFO] [stderr] Checking flate2 v1.1.4 [INFO] [stderr] Checking ppv-lite86 v0.2.21 [INFO] [stderr] Compiling freetype-sys v0.20.1 [INFO] [stderr] Checking num-complex v0.4.6 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking fdeflate v0.3.7 [INFO] [stderr] Checking safe_arch v0.7.4 [INFO] [stderr] Checking aho-corasick v1.1.3 [INFO] [stderr] Checking libloading v0.8.8 [INFO] [stderr] Compiling serde_json v1.0.145 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Checking option-ext v0.2.0 [INFO] [stderr] Compiling typenum v1.18.0 [INFO] [stderr] Checking regex-syntax v0.8.7 [INFO] [stderr] Checking color_quant v1.1.0 [INFO] [stderr] Compiling rustversion v1.0.22 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling typeid v1.0.3 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Checking wide v0.7.33 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Checking dirs-sys v0.5.0 [INFO] [stderr] Checking png v0.17.16 [INFO] [stderr] Checking dlib v0.5.2 [INFO] [stderr] Checking crossbeam-epoch v0.9.18 [INFO] [stderr] Checking const-random v0.1.18 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Checking weezl v0.1.10 [INFO] [stderr] Checking plotters-backend v0.3.7 [INFO] [stderr] Compiling syn v0.15.44 [INFO] [stderr] Compiling font-kit v0.14.3 [INFO] [stderr] Checking log v0.4.28 [INFO] [stderr] Compiling erased-serde v0.4.8 [INFO] [stderr] Checking jpeg-decoder v0.3.2 [INFO] [stderr] Compiling rayon-core v1.13.0 [INFO] [stderr] Checking anstream v0.6.21 [INFO] [stderr] Checking pathfinder_geometry v0.5.1 [INFO] [stderr] Checking gif v0.12.0 [INFO] [stderr] Checking rand_core v0.9.3 [INFO] [stderr] Checking regex-automata v0.4.13 [INFO] [stderr] Checking crossbeam-deque v0.8.6 [INFO] [stderr] Checking dlv-list v0.5.2 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Compiling quote v0.6.13 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking simba v0.9.1 [INFO] [stderr] Checking dirs v6.0.0 [INFO] [stderr] Checking image v0.24.9 [INFO] [stderr] Checking num-rational v0.4.2 [INFO] [stderr] Compiling proc-macro-error-attr2 v2.0.0 [INFO] [stderr] Checking clap_lex v0.7.5 [INFO] [stderr] Checking winnow v0.7.13 [INFO] [stderr] Checking hashbrown v0.16.0 [INFO] [stderr] Checking float-ord v0.3.2 [INFO] [stderr] Checking hashbrown v0.14.5 [INFO] [stderr] Checking iana-time-zone v0.1.64 [INFO] [stderr] Compiling anyhow v1.0.100 [INFO] [stderr] Checking clap_builder v4.5.49 [INFO] [stderr] Checking indexmap v2.11.4 [INFO] [stderr] Checking ordered-multimap v0.7.3 [INFO] [stderr] Checking chrono v0.4.42 [INFO] [stderr] Checking plotters-bitmap v0.3.7 [INFO] [stderr] Checking regex v1.12.2 [INFO] [stderr] Compiling proc-macro-error2 v2.0.1 [INFO] [stderr] Compiling serde_derive v1.0.228 [INFO] [stderr] Compiling thiserror-impl v2.0.16 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Checking toml_parser v1.0.3 [INFO] [stderr] Compiling clap_derive v4.5.49 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling pest v2.8.2 [INFO] [stderr] Checking thiserror v1.0.69 [INFO] [stderr] Checking rand_chacha v0.9.0 [INFO] [stderr] Checking plotters-svg v0.3.7 [INFO] [stderr] Checking hashlink v0.10.0 [INFO] [stderr] Checking toml_datetime v0.7.2 [INFO] [stderr] Checking serde_spanned v1.0.2 [INFO] [stderr] Checking csv-core v0.1.12 [INFO] [stderr] Checking nalgebra v0.33.2 [INFO] [stderr] Checking encoding_rs v0.8.35 [INFO] [stderr] Checking arraydeque v0.5.1 [INFO] [stderr] Checking unicode-segmentation v1.12.0 [INFO] [stderr] Checking ttf-parser v0.20.0 [INFO] [stderr] Compiling pest_meta v2.8.2 [INFO] [stderr] Checking bit-vec v0.8.0 [INFO] [stderr] Checking fixedbitset v0.5.7 [INFO] [stderr] Checking bit-set v0.8.0 [INFO] [stderr] Checking bio-types v1.0.4 [INFO] [stderr] Checking convert_case v0.6.0 [INFO] [stderr] Checking petgraph v0.8.2 [INFO] [stderr] Checking clap v4.5.49 [INFO] [stderr] Checking csv v1.4.0 [INFO] [stderr] Checking toml v0.9.7 [INFO] [stderr] Checking yaml-rust2 v0.10.4 [INFO] [stderr] Compiling pest_generator v2.8.2 [INFO] [stderr] Compiling derefable v0.1.0 [INFO] [stderr] Checking rand v0.9.2 [INFO] [stderr] Checking rayon v1.11.0 [INFO] [stderr] Checking bitflags v2.9.4 [INFO] [stderr] Checking ron v0.8.1 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking bv v0.11.1 [INFO] [stderr] Checking multimap v0.10.1 [INFO] [stderr] Checking plotters v0.3.7 [INFO] [stderr] Compiling pest_derive v2.8.2 [INFO] [stderr] Checking enum-map v2.7.3 [INFO] [stderr] Checking serde-untagged v0.1.9 [INFO] [stderr] Checking json5 v0.4.1 [INFO] [stderr] Compiling getset v0.1.6 [INFO] [stderr] Compiling async-trait v0.1.89 [INFO] [stderr] Checking rust-ini v0.21.3 [INFO] [stderr] Checking ndarray v0.16.1 [INFO] [stderr] Checking itertools v0.14.0 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking ordered-float v5.0.0 [INFO] [stderr] Checking bytecount v0.6.9 [INFO] [stderr] Checking pathdiff v0.2.3 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking editdistancek v1.0.2 [INFO] [stderr] Checking strum v0.26.3 [INFO] [stderr] Checking triple_accel v0.4.0 [INFO] [stderr] Checking rand_distr v0.5.1 [INFO] [stderr] Checking config v0.15.18 [INFO] [stderr] Checking colored v3.0.0 [INFO] [stderr] Checking half v2.6.0 [INFO] [stderr] Checking ciborium-io v0.2.2 [INFO] [stderr] Checking itertools v0.13.0 [INFO] [stderr] Checking tinytemplate v1.2.1 [INFO] [stderr] Checking ciborium-ll v0.2.2 [INFO] [stderr] Checking oorandom v11.1.5 [INFO] [stderr] Checking ciborium v0.2.2 [INFO] [stderr] Checking criterion-plot v0.6.0 [INFO] [stderr] Checking criterion v0.7.0 [INFO] [stderr] Checking statrs v0.18.0 [INFO] [stderr] Checking bio v3.0.0 [INFO] [stderr] Checking virust-splicing v0.2.1 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 12s [INFO] running `Command { std: "docker" "inspect" "b4a2d39c29571aa3db7c6616d57e7d379847515b66ab3268891097a3d283e2c5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b4a2d39c29571aa3db7c6616d57e7d379847515b66ab3268891097a3d283e2c5", kill_on_drop: false }` [INFO] [stdout] b4a2d39c29571aa3db7c6616d57e7d379847515b66ab3268891097a3d283e2c5