[INFO] cloning repository https://github.com/38/pyd4
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/38/pyd4" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] ae36c59429e1ac7bc38bf4a4e6f3f2942bf58526
[INFO] checking 38/pyd4 against master#217cb73577ed6f30a2005dd75bab01d23ec4cd60 for pr-148939
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F38%2Fpyd4" "/workspace/builds/worker-7-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-7-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/38/pyd4
[INFO] finished tweaking git repo https://github.com/38/pyd4
[INFO] tweaked toml for git repo https://github.com/38/pyd4 written to /workspace/builds/worker-7-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/38/pyd4 on toolchain 217cb73577ed6f30a2005dd75bab01d23ec4cd60
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+217cb73577ed6f30a2005dd75bab01d23ec4cd60" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/38/pyd4 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+217cb73577ed6f30a2005dd75bab01d23ec4cd60" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating git repository `https://github.com/38/d4-format.git`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded rayon-core v1.9.1
[INFO] [stderr]   Downloaded unindent v0.1.7
[INFO] [stderr]   Downloaded inventory-impl v0.1.10
[INFO] [stderr]   Downloaded ghost v0.1.2
[INFO] [stderr]   Downloaded pyo3cls v0.12.4
[INFO] [stderr]   Downloaded shlex v0.1.1
[INFO] [stderr]   Downloaded instant v0.1.10
[INFO] [stderr]   Downloaded memoffset v0.6.4
[INFO] [stderr]   Downloaded crossbeam-deque v0.8.1
[INFO] [stderr]   Downloaded which v3.1.1
[INFO] [stderr]   Downloaded crossbeam-utils v0.8.5
[INFO] [stderr]   Downloaded ansi_term v0.11.0
[INFO] [stderr]   Downloaded paste-impl v0.1.18
[INFO] [stderr]   Downloaded memmap v0.7.0
[INFO] [stderr]   Downloaded cexpr v0.4.0
[INFO] [stderr]   Downloaded libloading v0.7.0
[INFO] [stderr]   Downloaded clang-sys v1.2.0
[INFO] [stderr]   Downloaded crossbeam-channel v0.5.1
[INFO] [stderr]   Downloaded parking_lot v0.11.1
[INFO] [stderr]   Downloaded rayon v1.5.1
[INFO] [stderr]   Downloaded crossbeam-epoch v0.9.5
[INFO] [stderr]   Downloaded clap v2.33.3
[INFO] [stderr]   Downloaded bindgen v0.55.1
[INFO] [stderr]   Downloaded serde_derive v1.0.127
[INFO] [stderr]   Downloaded pyo3 v0.12.4
[INFO] [stderr]   Downloaded smallvec v1.6.1
[INFO] [stderr]   Downloaded syn v1.0.74
[INFO] [stderr]   Downloaded parking_lot_core v0.8.3
[INFO] [stderr]   Downloaded pyo3-derive-backend v0.12.4
[INFO] [stderr]   Downloaded pkg-config v0.3.19
[INFO] [stderr]   Downloaded inventory v0.1.10
[INFO] [stderr]   Downloaded unicode-width v0.1.8
[INFO] [stderr]   Downloaded indoc-impl v0.3.6
[INFO] [stderr]   Downloaded indoc v0.3.6
[INFO] [stderr]   Downloaded ctor v0.1.20
[INFO] [stderr]   Downloaded lock_api v0.4.4
[INFO] [stderr]   Downloaded paste v0.1.18
[INFO] [stderr]   Downloaded serde v1.0.127
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:94a0c148923f5b2b52a63ef0eeb1882ad339ab61bce784c8077cbe41c61feb6c" "/opt/rustwide/cargo-home/bin/cargo" "+217cb73577ed6f30a2005dd75bab01d23ec4cd60" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] ee94ff75a6670e5d737c04245762a523cf420cbfb1fbeafc32853579aa979f95
[INFO] running `Command { std: "docker" "start" "-a" "ee94ff75a6670e5d737c04245762a523cf420cbfb1fbeafc32853579aa979f95", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "ee94ff75a6670e5d737c04245762a523cf420cbfb1fbeafc32853579aa979f95", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ee94ff75a6670e5d737c04245762a523cf420cbfb1fbeafc32853579aa979f95", kill_on_drop: false }`
[INFO] [stdout] ee94ff75a6670e5d737c04245762a523cf420cbfb1fbeafc32853579aa979f95
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:94a0c148923f5b2b52a63ef0eeb1882ad339ab61bce784c8077cbe41c61feb6c" "/opt/rustwide/cargo-home/bin/cargo" "+217cb73577ed6f30a2005dd75bab01d23ec4cd60" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 7f353d14f98f9f34f1b829420440321b728912e2825f82bbb8b5e95e4888eb7d
[INFO] running `Command { std: "docker" "start" "-a" "7f353d14f98f9f34f1b829420440321b728912e2825f82bbb8b5e95e4888eb7d", kill_on_drop: false }`
[INFO] [stderr]    Compiling syn v1.0.74
[INFO] [stderr]    Compiling memchr v2.4.1
[INFO] [stderr]    Compiling libc v0.2.99
[INFO] [stderr]    Compiling glob v0.3.0
[INFO] [stderr]    Compiling crossbeam-utils v0.8.5
[INFO] [stderr]    Compiling log v0.4.14
[INFO] [stderr]    Compiling memoffset v0.6.4
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling regex-syntax v0.6.25
[INFO] [stderr]    Compiling proc-macro-hack v0.5.19
[INFO] [stderr]    Compiling nom v5.1.2
[INFO] [stderr]    Compiling unicode-width v0.1.8
[INFO] [stderr]    Compiling libloading v0.7.0
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling bitflags v1.3.2
[INFO] [stderr]    Compiling termcolor v1.1.2
[INFO] [stderr]    Compiling humantime v1.3.0
[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling strsim v0.8.0
[INFO] [stderr]    Compiling bindgen v0.55.1
[INFO] [stderr]    Compiling ansi_term v0.11.0
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.5
[INFO] [stderr]    Compiling miniz_oxide v0.4.4
[INFO] [stderr]    Compiling crc32fast v1.2.1
[INFO] [stderr]    Compiling rayon-core v1.9.1
[INFO] [stderr]    Compiling shlex v0.1.1
[INFO] [stderr]    Compiling clang-sys v1.2.0
[INFO] [stderr]    Compiling serde v1.0.127
[INFO] [stderr]     Checking getrandom v0.1.16
[INFO] [stderr]     Checking adler v1.0.2
[INFO] [stderr]    Compiling pkg-config v0.3.19
[INFO] [stderr]     Checking crossbeam-channel v0.5.1
[INFO] [stderr]     Checking num_cpus v1.13.0
[INFO] [stderr]    Compiling rayon v1.5.1
[INFO] [stderr]     Checking instant v0.1.10
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling which v3.1.1
[INFO] [stderr]     Checking rand_core v0.5.1
[INFO] [stderr]    Compiling clap v2.33.3
[INFO] [stderr]     Checking smallvec v1.6.1
[INFO] [stderr]    Compiling serde_json v1.0.66
[INFO] [stderr]    Compiling aho-corasick v0.7.18
[INFO] [stderr]     Checking crossbeam-deque v0.8.1
[INFO] [stderr]    Compiling unindent v0.1.7
[INFO] [stderr]    Compiling inventory v0.1.10
[INFO] [stderr]     Checking ppv-lite86 v0.2.10
[INFO] [stderr]    Compiling serde_derive v1.0.127
[INFO] [stderr]     Checking parking_lot_core v0.8.3
[INFO] [stderr]     Checking memmap v0.7.0
[INFO] [stderr]     Checking flate2 v1.0.20
[INFO] [stderr]     Checking lock_api v0.4.4
[INFO] [stderr]    Compiling pyo3 v0.12.4
[INFO] [stderr]     Checking either v1.6.1
[INFO] [stderr]    Compiling paste-impl v0.1.18
[INFO] [stderr]     Checking rand_chacha v0.2.2
[INFO] [stderr]     Checking parking_lot v0.11.1
[INFO] [stderr]     Checking rand v0.7.3
[INFO] [stderr]     Checking paste v0.1.18
[INFO] [stderr]    Compiling regex v1.5.4
[INFO] [stderr]    Compiling cexpr v0.4.0
[INFO] [stderr]    Compiling env_logger v0.7.1
[INFO] [stderr]     Checking d4-framefile v0.2.18 (https://github.com/38/d4-format.git#fe86a8f0)
[INFO] [stderr]    Compiling pyo3-derive-backend v0.12.4
[INFO] [stderr]    Compiling inventory-impl v0.1.10
[INFO] [stderr]    Compiling ctor v0.1.20
[INFO] [stderr]    Compiling indoc-impl v0.3.6
[INFO] [stderr]    Compiling ghost v0.1.2
[INFO] [stderr]     Checking indoc v0.3.6
[INFO] [stderr]    Compiling pyo3cls v0.12.4
[INFO] [stderr]    Compiling d4-hts v0.2.18 (https://github.com/38/d4-format.git#fe86a8f0)
[INFO] [stderr] error: failed to run custom build command for `d4-hts v0.2.18 (https://github.com/38/d4-format.git#fe86a8f0)`
[INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation.
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/d4-hts-ca0b28b940e7a646/build-script-build` (exit status: 101)
[INFO] [stderr]   --- stderr
[INFO] [stderr]   + pushd /opt/rustwide/target/debug/build/d4-hts-6f2dd6f3a39be24a/out
[INFO] [stderr]   + HTSLIB_VERSION=1.11
[INFO] [stderr]   + rm -rf /opt/rustwide/target/debug/build/d4-hts-6f2dd6f3a39be24a/out/htslib
[INFO] [stderr]   + git clone -b 1.11 https://github.com/samtools/htslib.git
[INFO] [stderr]   Cloning into 'htslib'...
[INFO] [stderr]   fatal: unable to access 'https://github.com/samtools/htslib.git/': Could not resolve host: github.com
[INFO] [stderr] 
[INFO] [stderr]   thread 'main' (1464) panicked at /opt/rustwide/cargo-home/git/checkouts/d4-format-aae4f10fa7ab24bd/fe86a8f/d4-hts/build.rs:34:5:
[INFO] [stderr]   assertion failed: Command::new("bash").args(&["build_htslib.sh",
[INFO] [stderr]                                           &version]).stdout(std::process::Stdio::null()).spawn().expect("Unable to build htslib").wait().unwrap().success()
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x5c8117076b62 - std::backtrace_rs::backtrace::libunwind::trace::hf12beacd451e51d4
[INFO] [stderr]                                  at /rustc/217cb73577ed6f30a2005dd75bab01d23ec4cd60/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9
[INFO] [stderr]      1:     0x5c8117076b62 - std::backtrace_rs::backtrace::trace_unsynchronized::hf6fead6a1bbc8430
[INFO] [stderr]                                  at /rustc/217cb73577ed6f30a2005dd75bab01d23ec4cd60/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14
[INFO] [stderr]      2:     0x5c8117076b62 - std::sys::backtrace::_print_fmt::h9d014a34f7b74b8e
[INFO] [stderr]                                  at /rustc/217cb73577ed6f30a2005dd75bab01d23ec4cd60/library/std/src/sys/backtrace.rs:66:9
[INFO] [stderr]      3:     0x5c8117076b62 - <std::sys::backtrace::BacktraceLock::print::DisplayBacktrace as core::fmt::Display>::fmt::h639f36bab51f3955
[INFO] [stderr]                                  at /rustc/217cb73577ed6f30a2005dd75bab01d23ec4cd60/library/std/src/sys/backtrace.rs:39:26
[INFO] [stderr]      4:     0x5c8117087ba7 - core::fmt::rt::Argument::fmt::he9e2dcd4d1a4f79f
[INFO] [stderr]                                  at /rustc/217cb73577ed6f30a2005dd75bab01d23ec4cd60/library/core/src/fmt/rt.rs:152:76
[INFO] [stderr]      5:     0x5c8117087ba7 - core::fmt::write::h791a50b587c63062
[INFO] [stderr]      6:     0x5c8117047536 - std::io::default_write_fmt::h457b557e32e1fb00
[INFO] [stderr]                                  at /rustc/217cb73577ed6f30a2005dd75bab01d23ec4cd60/library/std/src/io/mod.rs:639:11
[INFO] [stderr]      7:     0x5c8117047536 - std::io::Write::write_fmt::hfe130653c54466c6
[INFO] [stderr]                                  at /rustc/217cb73577ed6f30a2005dd75bab01d23ec4cd60/library/std/src/io/mod.rs:1994:13
[INFO] [stderr]      8:     0x5c8117054394 - std::sys::backtrace::BacktraceLock::print::h3ee5721e3f554378
[INFO] [stderr]                                  at /rustc/217cb73577ed6f30a2005dd75bab01d23ec4cd60/library/std/src/sys/backtrace.rs:42:9
[INFO] [stderr]      9:     0x5c8117054394 - std::panicking::default_hook::{{closure}}::h78548964055f6042
[INFO] [stderr]                                  at /rustc/217cb73577ed6f30a2005dd75bab01d23ec4cd60/library/std/src/panicking.rs:293:27
[INFO] [stderr]     10:     0x5c81170541b9 - std::panicking::default_hook::h0a256f5fc8ef64e6
[INFO] [stderr]                                  at /rustc/217cb73577ed6f30a2005dd75bab01d23ec4cd60/library/std/src/panicking.rs:320:9
[INFO] [stderr]     11:     0x5c811705495b - std::panicking::panic_with_hook::h066093fc9e0da349
[INFO] [stderr]                                  at /rustc/217cb73577ed6f30a2005dd75bab01d23ec4cd60/library/std/src/panicking.rs:826:13
[INFO] [stderr]     12:     0x5c811705475a - std::panicking::panic_handler::{{closure}}::hcad50f1998ef02e0
[INFO] [stderr]                                  at /rustc/217cb73577ed6f30a2005dd75bab01d23ec4cd60/library/std/src/panicking.rs:692:13
[INFO] [stderr]     13:     0x5c8117051a59 - std::sys::backtrace::__rust_end_short_backtrace::h84a12e76b874911b
[INFO] [stderr]                                  at /rustc/217cb73577ed6f30a2005dd75bab01d23ec4cd60/library/std/src/sys/backtrace.rs:174:18
[INFO] [stderr]     14:     0x5c811703bf5d - __rustc[db2c63b0d9ad08bd]::rust_begin_unwind
[INFO] [stderr]                                  at /rustc/217cb73577ed6f30a2005dd75bab01d23ec4cd60/library/std/src/panicking.rs:690:5
[INFO] [stderr]     15:     0x5c811709172c - core::panicking::panic_fmt::h61ea4c5c8806d7fc
[INFO] [stderr]                                  at /rustc/217cb73577ed6f30a2005dd75bab01d23ec4cd60/library/core/src/panicking.rs:80:14
[INFO] [stderr]     16:     0x5c81170916f2 - core::panicking::panic::h4bcb38e4e4b47c81
[INFO] [stderr]                                  at /rustc/217cb73577ed6f30a2005dd75bab01d23ec4cd60/library/core/src/panicking.rs:150:5
[INFO] [stderr]     17:     0x5c8116cb9cbc - build_script_build::build_own_htslib::h35e66d04d8ad90e7
[INFO] [stderr]     18:     0x5c8116cba5f1 - build_script_build::main::h6a84360af2ac0c5e
[INFO] [stderr]     19:     0x5c8116cbb5b3 - core::ops::function::FnOnce::call_once::hc5e2ce2dfaf2e5ea
[INFO] [stderr]     20:     0x5c8116cbb216 - std::sys::backtrace::__rust_begin_short_backtrace::h82e21506b83104e7
[INFO] [stderr]     21:     0x5c8116cbb1f9 - std::rt::lang_start::{{closure}}::heb4cfcb332f42680
[INFO] [stderr]     22:     0x5c8117048e5a - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::h474f7857509d3e2b
[INFO] [stderr]                                  at /rustc/217cb73577ed6f30a2005dd75bab01d23ec4cd60/library/core/src/ops/function.rs:287:21
[INFO] [stderr]     23:     0x5c8117048e5a - std::panicking::catch_unwind::do_call::h1b4842681d37b4de
[INFO] [stderr]                                  at /rustc/217cb73577ed6f30a2005dd75bab01d23ec4cd60/library/std/src/panicking.rs:582:40
[INFO] [stderr]     24:     0x5c8117048e5a - std::panicking::catch_unwind::h8caa954e23f3d392
[INFO] [stderr]                                  at /rustc/217cb73577ed6f30a2005dd75bab01d23ec4cd60/library/std/src/panicking.rs:545:19
[INFO] [stderr]     25:     0x5c8117048e5a - std::panic::catch_unwind::h799510bc1e15c53c
[INFO] [stderr]                                  at /rustc/217cb73577ed6f30a2005dd75bab01d23ec4cd60/library/std/src/panic.rs:359:14
[INFO] [stderr]     26:     0x5c8117048e5a - std::rt::lang_start_internal::{{closure}}::hdd766f796ed54cf9
[INFO] [stderr]                                  at /rustc/217cb73577ed6f30a2005dd75bab01d23ec4cd60/library/std/src/rt.rs:175:24
[INFO] [stderr]     27:     0x5c8117048e5a - std::panicking::catch_unwind::do_call::hb51acc40ffa92e40
[INFO] [stderr]                                  at /rustc/217cb73577ed6f30a2005dd75bab01d23ec4cd60/library/std/src/panicking.rs:582:40
[INFO] [stderr]     28:     0x5c8117048e5a - std::panicking::catch_unwind::h4ba9c0843d285bb6
[INFO] [stderr]                                  at /rustc/217cb73577ed6f30a2005dd75bab01d23ec4cd60/library/std/src/panicking.rs:545:19
[INFO] [stderr]     29:     0x5c8117048e5a - std::panic::catch_unwind::hc6ee6b11e632194f
[INFO] [stderr]                                  at /rustc/217cb73577ed6f30a2005dd75bab01d23ec4cd60/library/std/src/panic.rs:359:14
[INFO] [stderr]     30:     0x5c8117048e5a - std::rt::lang_start_internal::h035258992d18009b
[INFO] [stderr]                                  at /rustc/217cb73577ed6f30a2005dd75bab01d23ec4cd60/library/std/src/rt.rs:171:5
[INFO] [stderr]     31:     0x5c8116cbb1e1 - std::rt::lang_start::hb53ae4c73bb4f08a
[INFO] [stderr]     32:     0x5c8116cbd395 - main
[INFO] [stderr]     33:     0x7b7ac71071ca - <unknown>
[INFO] [stderr]     34:     0x7b7ac710728b - __libc_start_main
[INFO] [stderr]     35:     0x5c8116cb9565 - _start
[INFO] [stderr]     36:                0x0 - <unknown>
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] running `Command { std: "docker" "inspect" "7f353d14f98f9f34f1b829420440321b728912e2825f82bbb8b5e95e4888eb7d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7f353d14f98f9f34f1b829420440321b728912e2825f82bbb8b5e95e4888eb7d", kill_on_drop: false }`
[INFO] [stdout] 7f353d14f98f9f34f1b829420440321b728912e2825f82bbb8b5e95e4888eb7d
