[INFO] cloning repository https://github.com/clinico-omics/omics-tools [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/clinico-omics/omics-tools" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclinico-omics%2Fomics-tools", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclinico-omics%2Fomics-tools'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 225d596d6872b010a31f9f8703e5294decfa73ef [INFO] checking clinico-omics/omics-tools against try#4f260f0f20b3133d20cfb50353c0221943af5796+rustflags=-Dunmustuse_in_always_ok for pr-148577 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclinico-omics%2Fomics-tools" "/workspace/builds/worker-2-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc2/source'... [INFO] [stderr] done. [INFO] removed /workspace/builds/worker-2-tc2/source/.cargo/config.toml [INFO] started tweaking git repo https://github.com/clinico-omics/omics-tools [INFO] finished tweaking git repo https://github.com/clinico-omics/omics-tools [INFO] tweaked toml for git repo https://github.com/clinico-omics/omics-tools written to /workspace/builds/worker-2-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/clinico-omics/omics-tools on toolchain 4f260f0f20b3133d20cfb50353c0221943af5796 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+4f260f0f20b3133d20cfb50353c0221943af5796" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/clinico-omics/omics-tools already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+4f260f0f20b3133d20cfb50353c0221943af5796" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] warning: profiles for the non root package will be ignored, specify profiles at the workspace root: [INFO] [stderr] package: /workspace/builds/worker-2-tc2/source/bam-util/Cargo.toml [INFO] [stderr] workspace: /workspace/builds/worker-2-tc2/source/Cargo.toml [INFO] [stderr] warning: profiles for the non root package will be ignored, specify profiles at the workspace root: [INFO] [stderr] package: /workspace/builds/worker-2-tc2/source/vcf-util/Cargo.toml [INFO] [stderr] workspace: /workspace/builds/worker-2-tc2/source/Cargo.toml [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+4f260f0f20b3133d20cfb50353c0221943af5796" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] b2b4c00243331626a6c3cf179213bd52273f9eecacafc345f4ce329a522524ab [INFO] running `Command { std: "docker" "start" "-a" "b2b4c00243331626a6c3cf179213bd52273f9eecacafc345f4ce329a522524ab", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "b2b4c00243331626a6c3cf179213bd52273f9eecacafc345f4ce329a522524ab", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b2b4c00243331626a6c3cf179213bd52273f9eecacafc345f4ce329a522524ab", kill_on_drop: false }` [INFO] [stdout] b2b4c00243331626a6c3cf179213bd52273f9eecacafc345f4ce329a522524ab [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid -Dunmustuse_in_always_ok" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+4f260f0f20b3133d20cfb50353c0221943af5796" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] f36fff78c4b1c4c2c628bdbcd68d230f5945678c2395fa39c2b2b91a77fdd478 [INFO] running `Command { std: "docker" "start" "-a" "f36fff78c4b1c4c2c628bdbcd68d230f5945678c2395fa39c2b2b91a77fdd478", kill_on_drop: false }` [INFO] [stderr] warning: profiles for the non root package will be ignored, specify profiles at the workspace root: [INFO] [stderr] package: /opt/rustwide/workdir/bam-util/Cargo.toml [INFO] [stderr] workspace: /opt/rustwide/workdir/Cargo.toml [INFO] [stderr] warning: profiles for the non root package will be ignored, specify profiles at the workspace root: [INFO] [stderr] package: /opt/rustwide/workdir/vcf-util/Cargo.toml [INFO] [stderr] workspace: /opt/rustwide/workdir/Cargo.toml [INFO] [stderr] Compiling libc v0.2.94 [INFO] [stderr] Compiling proc-macro2 v1.0.26 [INFO] [stderr] Compiling syn v1.0.72 [INFO] [stderr] Compiling memchr v2.4.0 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Compiling log v0.4.14 [INFO] [stderr] Checking lazy_static v0.2.11 [INFO] [stderr] Checking thread_local v0.3.4 [INFO] [stderr] Checking termcolor v1.1.2 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Checking tinyvec v1.2.0 [INFO] [stderr] Checking gimli v0.24.0 [INFO] [stderr] Checking exitcode v1.1.2 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking unicode-bidi v0.3.5 [INFO] [stderr] Checking ahash v0.4.7 [INFO] [stderr] Checking aho-corasick v0.7.18 [INFO] [stderr] Compiling quote v1.0.9 [INFO] [stderr] Checking object v0.24.0 [INFO] [stderr] Checking atty v0.2.11 [INFO] [stderr] Checking time v0.1.44 [INFO] [stderr] Compiling jobserver v0.1.22 [INFO] [stderr] Checking chrono v0.4.19 [INFO] [stderr] Compiling cc v1.0.67 [INFO] [stderr] Checking regex v1.5.4 [INFO] [stderr] Checking clap v2.33.3 [INFO] [stderr] Checking unicode-normalization v0.1.17 [INFO] [stderr] Checking stderrlog v0.4.3 [INFO] [stderr] Compiling openssl-src v111.15.0+1.1.1k [INFO] [stderr] Checking addr2line v0.15.1 [INFO] [stderr] Checking rustc-demangle v0.1.19 [INFO] [stderr] Checking lexical-core v0.7.6 [INFO] [stderr] Checking form_urlencoded v1.0.1 [INFO] [stderr] Checking idna v0.2.3 [INFO] [stderr] Checking hashbrown v0.9.1 [INFO] [stderr] Compiling libz-sys v1.1.3 [INFO] [stderr] Compiling openssl-sys v0.9.63 [INFO] [stderr] Compiling curl-sys v0.4.43+curl-7.76.0 [INFO] [stderr] Compiling lzma-sys v0.1.17 [INFO] [stderr] Compiling bzip2-sys v0.1.10+1.0.8 [INFO] [stderr] Compiling backtrace v0.3.59 [INFO] [stderr] Compiling cloudflare-zlib-sys v0.2.0 [INFO] [stderr] Compiling hts-sys v1.11.1-fix1 [INFO] [stderr] Compiling libsqlite3-sys v0.20.1 [INFO] [stderr] Compiling syn v0.15.44 [INFO] [stderr] Checking hashlink v0.6.0 [INFO] [stderr] Checking url v2.2.2 [INFO] [stderr] Checking nom v5.1.2 [INFO] [stderr] Checking fallible-streaming-iterator v0.1.9 [INFO] [stderr] Checking fallible-iterator v0.2.0 [INFO] [stderr] Checking ieee754 v0.2.6 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking linear-map v1.2.0 [INFO] [stderr] Compiling synstructure v0.12.4 [INFO] [stderr] Compiling structopt-derive v0.4.14 [INFO] [stderr] Compiling thiserror-impl v1.0.24 [INFO] [stderr] Compiling failure_derive v0.1.8 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling strum_macros v0.20.1 [INFO] [stderr] Checking failure v0.1.8 [INFO] [stderr] Compiling derefable v0.1.0 [INFO] [stderr] Checking vcf v0.5.0 [INFO] [stderr] Checking flate2 v1.0.20 [INFO] [stderr] Checking thiserror v1.0.24 [INFO] [stderr] Checking structopt v0.3.21 [INFO] [stderr] Checking bio-types v0.11.0 [INFO] [stderr] Checking rusqlite v0.24.2 [INFO] [stderr] Checking vcf-util v0.1.0 (/opt/rustwide/workdir/vcf-util) [INFO] [stdout] warning: function `infer_format_schema` is never used [INFO] [stdout] --> vcf-util/src/vcf/convertor.rs:106:4 [INFO] [stdout] | [INFO] [stdout] 106 | fn infer_format_schema(reader: &VCFReader) -> HashMap { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `f64_into_vec_u8` is never used [INFO] [stdout] --> vcf-util/src/vcf/convertor.rs:159:4 [INFO] [stdout] | [INFO] [stdout] 159 | fn f64_into_vec_u8(value: std::option::Option) -> Vec { [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `infer_format_schema` is never used [INFO] [stdout] --> vcf-util/src/vcf/convertor.rs:106:4 [INFO] [stdout] | [INFO] [stdout] 106 | fn infer_format_schema(reader: &VCFReader) -> HashMap { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `f64_into_vec_u8` is never used [INFO] [stdout] --> vcf-util/src/vcf/convertor.rs:159:4 [INFO] [stdout] | [INFO] [stdout] 159 | fn f64_into_vec_u8(value: std::option::Option) -> Vec { [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `#[macro_use]` import [INFO] [stdout] --> vcf-util/src/main.rs:2:1 [INFO] [stdout] | [INFO] [stdout] 2 | #[macro_use] [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `#[macro_use]` import [INFO] [stdout] --> vcf-util/src/main.rs:5:1 [INFO] [stdout] | [INFO] [stdout] 5 | #[macro_use] [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: this type will no longer be must used: Result [INFO] [stdout] --> vcf-util/src/vcf_cmd/makedb.rs:18:3 [INFO] [stdout] | [INFO] [stdout] 18 | / /// VCF file to process [INFO] [stdout] 19 | | #[structopt(name = "FILE")] [INFO] [stdout] 20 | | input: String, [INFO] [stdout] | |_______________^ [INFO] [stdout] | [INFO] [stdout] = note: requested on the command line with `-D unmustuse-in-always-ok` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: this type will no longer be must used: Result [INFO] [stdout] --> vcf-util/src/vcf_cmd/makedb.rs:22:3 [INFO] [stdout] | [INFO] [stdout] 22 | / /// Output file. [INFO] [stdout] 23 | | #[structopt( [INFO] [stdout] 24 | | name = "output", [INFO] [stdout] 25 | | short = "o", [INFO] [stdout] ... | [INFO] [stdout] 28 | | )] [INFO] [stdout] 29 | | output: String, [INFO] [stdout] | |________________^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `vcf-util` (bin "vcf-util") due to 2 previous errors; 2 warnings emitted [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] running `Command { std: "docker" "inspect" "f36fff78c4b1c4c2c628bdbcd68d230f5945678c2395fa39c2b2b91a77fdd478", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f36fff78c4b1c4c2c628bdbcd68d230f5945678c2395fa39c2b2b91a77fdd478", kill_on_drop: false }` [INFO] [stdout] f36fff78c4b1c4c2c628bdbcd68d230f5945678c2395fa39c2b2b91a77fdd478