[INFO] fetching crate rustybam 0.1.34... [INFO] checking rustybam-0.1.34 against master#642c19bfc3a5c1de985bf5d0cc8207ac9d22708a for pr-148577 [INFO] extracting crate rustybam 0.1.34 into /workspace/builds/worker-1-tc1/source [INFO] removed /workspace/builds/worker-1-tc1/source/.cargo/config.toml [INFO] started tweaking crates.io crate rustybam 0.1.34 [INFO] finished tweaking crates.io crate rustybam 0.1.34 [INFO] tweaked toml for crates.io crate rustybam 0.1.34 written to /workspace/builds/worker-1-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate rustybam 0.1.34 on toolchain 642c19bfc3a5c1de985bf5d0cc8207ac9d22708a [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+642c19bfc3a5c1de985bf5d0cc8207ac9d22708a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate rustybam 0.1.34 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+642c19bfc3a5c1de985bf5d0cc8207ac9d22708a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] warning: file `/workspace/builds/worker-1-tc1/source/src/main.rs` found to be present in multiple build targets: [INFO] [stderr] * `bin` target `rb` [INFO] [stderr] * `bin` target `rustybam` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded ieee754 v0.2.6 [INFO] [stderr] Downloaded bio-types v1.0.4 [INFO] [stderr] Downloaded derive-new v0.5.9 [INFO] [stderr] Downloaded fs-utils v1.1.4 [INFO] [stderr] Downloaded itertools-num v0.1.3 [INFO] [stderr] Downloaded calmio_filters v0.1.0 [INFO] [stderr] Downloaded calm_io v0.1.1 [INFO] [stderr] Downloaded derive-new v0.6.0 [INFO] [stderr] Downloaded libdeflater v0.12.0 [INFO] [stderr] Downloaded multimap v0.9.1 [INFO] [stderr] Downloaded editdistancek v1.0.2 [INFO] [stderr] Downloaded bio-io v0.3.2 [INFO] [stderr] Downloaded triple_accel v0.4.0 [INFO] [stderr] Downloaded needletail v0.5.1 [INFO] [stderr] Downloaded niffler v2.7.0 [INFO] [stderr] Downloaded rust-htslib v0.44.1 [INFO] [stderr] Downloaded bio v1.6.0 [INFO] [stderr] Downloaded gzp v0.11.3 [INFO] [stderr] Downloaded curl-sys v0.4.80+curl-8.12.1 [INFO] [stderr] Downloaded hts-sys v2.2.0 [INFO] [stderr] Downloaded libdeflate-sys v0.12.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+642c19bfc3a5c1de985bf5d0cc8207ac9d22708a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 452ddcf896846c48850b36c8b1ec5b69852e39600eed811b6c01a479e1c46118 [INFO] running `Command { std: "docker" "start" "-a" "452ddcf896846c48850b36c8b1ec5b69852e39600eed811b6c01a479e1c46118", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "452ddcf896846c48850b36c8b1ec5b69852e39600eed811b6c01a479e1c46118", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "452ddcf896846c48850b36c8b1ec5b69852e39600eed811b6c01a479e1c46118", kill_on_drop: false }` [INFO] [stdout] 452ddcf896846c48850b36c8b1ec5b69852e39600eed811b6c01a479e1c46118 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+642c19bfc3a5c1de985bf5d0cc8207ac9d22708a" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] e236bcc9996ae3bf35382d0d26d8373e3db4ba8561a91253b3d50c691a12ee28 [INFO] running `Command { std: "docker" "start" "-a" "e236bcc9996ae3bf35382d0d26d8373e3db4ba8561a91253b3d50c691a12ee28", kill_on_drop: false }` [INFO] [stderr] warning: file `/opt/rustwide/workdir/src/main.rs` found to be present in multiple build targets: [INFO] [stderr] * `bin` target `rb` [INFO] [stderr] * `bin` target `rustybam` [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling zerocopy v0.8.24 [INFO] [stderr] Compiling indexmap v1.9.3 [INFO] [stderr] Compiling libc v0.2.171 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling syn v2.0.100 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Checking getrandom v0.2.15 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling matrixmultiply v0.3.9 [INFO] [stderr] Checking smallvec v1.15.0 [INFO] [stderr] Checking bytemuck v1.22.0 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling regex-syntax v0.8.5 [INFO] [stderr] Compiling hashbrown v0.12.3 [INFO] [stderr] Compiling os_str_bytes v6.6.1 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling textwrap v0.16.2 [INFO] [stderr] Checking safe_arch v0.7.4 [INFO] [stderr] Compiling snap v1.1.1 [INFO] [stderr] Checking rand_core v0.6.4 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling clap_lex v0.2.4 [INFO] [stderr] Compiling portable-atomic v1.11.0 [INFO] [stderr] Checking nanorand v0.7.0 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking num_cpus v1.16.0 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Compiling jobserver v0.1.33 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling log v0.4.27 [INFO] [stderr] Checking futures-sink v0.3.31 [INFO] [stderr] Compiling humantime v2.2.0 [INFO] [stderr] Checking console v0.15.11 [INFO] [stderr] Checking indexmap v2.9.0 [INFO] [stderr] Checking core_affinity v0.8.3 [INFO] [stderr] Compiling cc v1.2.19 [INFO] [stderr] Checking csv-core v0.1.12 [INFO] [stderr] Checking ieee754 v0.2.6 [INFO] [stderr] Checking wide v0.7.32 [INFO] [stderr] Checking linear-map v1.2.0 [INFO] [stderr] Checking bytecount v0.6.8 [INFO] [stderr] Checking buffer-redux v1.0.2 [INFO] [stderr] Checking triple_accel v0.4.0 [INFO] [stderr] Checking editdistancek v1.0.2 [INFO] [stderr] Checking strum v0.25.0 [INFO] [stderr] Checking num-format v0.4.4 [INFO] [stderr] Checking num-complex v0.4.6 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Compiling regex-automata v0.4.9 [INFO] [stderr] Checking ordered-float v3.9.2 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking env_logger v0.9.3 [INFO] [stderr] Checking num-rational v0.4.2 [INFO] [stderr] Checking indicatif v0.17.11 [INFO] [stderr] Checking ndarray v0.15.6 [INFO] [stderr] Checking petgraph v0.6.5 [INFO] [stderr] Checking chrono v0.4.40 [INFO] [stderr] Checking natord v1.0.9 [INFO] [stderr] Checking bimap v0.6.3 [INFO] [stderr] Compiling cmake v0.1.54 [INFO] [stderr] Compiling openssl-src v300.5.0+3.5.0 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling bzip2-sys v0.1.13+1.0.8 [INFO] [stderr] Compiling curl-sys v0.4.80+curl-8.12.1 [INFO] [stderr] Compiling libdeflate-sys v0.12.0 [INFO] [stderr] Compiling hts-sys v2.2.0 [INFO] [stderr] Checking simba v0.6.0 [INFO] [stderr] Compiling openssl-sys v0.9.107 [INFO] [stderr] Compiling libz-sys v1.1.22 [INFO] [stderr] Checking ppv-lite86 v0.2.21 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Checking bzip2 v0.4.4 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Compiling regex v1.11.1 [INFO] [stderr] Checking libdeflater v0.12.0 [INFO] [stderr] Compiling clap_derive v3.2.25 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling calmio_filters v0.1.0 [INFO] [stderr] Checking xz2 v0.1.7 [INFO] [stderr] Checking calm_io v0.1.1 [INFO] [stderr] Compiling clap v3.2.25 [INFO] [stderr] Checking nalgebra v0.29.0 [INFO] [stderr] Compiling synstructure v0.13.1 [INFO] [stderr] Compiling zerovec-derive v0.10.3 [INFO] [stderr] Compiling displaydoc v0.2.5 [INFO] [stderr] Compiling icu_provider_macros v1.5.0 [INFO] [stderr] Compiling serde_derive v1.0.219 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling pin-project-internal v1.1.10 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling thiserror-impl v2.0.12 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Compiling zerofrom-derive v0.1.6 [INFO] [stderr] Compiling yoke-derive v0.7.5 [INFO] [stderr] Checking enum-map v2.7.3 [INFO] [stderr] Compiling strum_macros v0.25.3 [INFO] [stderr] Checking thiserror v2.0.12 [INFO] [stderr] Checking pin-project v1.1.10 [INFO] [stderr] Checking flume v0.10.14 [INFO] [stderr] Checking thiserror v1.0.69 [INFO] [stderr] Checking bio-types v1.0.4 [INFO] [stderr] Checking zerofrom v0.1.6 [INFO] [stderr] Checking yoke v0.7.5 [INFO] [stderr] Checking zerovec v0.10.4 [INFO] [stderr] Compiling clap_complete v3.2.5 [INFO] [stderr] Checking serde v1.0.219 [INFO] [stderr] Checking tinystr v0.7.6 [INFO] [stderr] Checking icu_collections v1.5.0 [INFO] [stderr] Compiling rustybam v0.1.34 (/opt/rustwide/workdir) [INFO] [stderr] Checking icu_locid v1.5.0 [INFO] [stderr] Checking icu_provider v1.5.0 [INFO] [stderr] Checking icu_locid_transform v1.5.0 [INFO] [stderr] Checking icu_properties v1.5.1 [INFO] [stderr] Checking flate2 v1.1.1 [INFO] [stderr] Checking gzp v0.11.3 [INFO] [stderr] Checking niffler v2.7.0 [INFO] [stderr] Checking needletail v0.5.1 [INFO] [stderr] Checking csv v1.3.1 [INFO] [stderr] Checking bv v0.11.1 [INFO] [stderr] Checking multimap v0.9.1 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking icu_normalizer v1.5.0 [INFO] [stderr] Checking idna_adapter v1.2.0 [INFO] [stderr] Checking idna v1.0.3 [INFO] [stderr] Checking url v2.5.4 [INFO] [stderr] Checking statrs v0.16.1 [INFO] [stderr] Checking bio v1.6.0 [INFO] [stderr] Checking rust-htslib v0.44.1 [INFO] [stderr] Checking bio-io v0.3.2 [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/annotate.rs:6:26 [INFO] [stdout] | [INFO] [stdout] 6 | fn find_bed_overlaps(&self, rec: &bed::Record) -> Vec>; [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 6 | fn find_bed_overlaps(&self, rec: &bed::Record) -> Vec>; [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/annotate.rs:10:26 [INFO] [stdout] | [INFO] [stdout] 10 | fn find_bed_overlaps(&self, rec: &bed::Record) -> Vec> { [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 10 | fn find_bed_overlaps(&self, rec: &bed::Record) -> Vec> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary parentheses around closure body [INFO] [stdout] --> src/main.rs:206:60 [INFO] [stdout] | [INFO] [stdout] 206 | let largest_rec = group.max_by_key(|p| (p.t_en - p.t_st)).unwrap(); [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 206 - let largest_rec = group.max_by_key(|p| (p.t_en - p.t_st)).unwrap(); [INFO] [stdout] 206 + let largest_rec = group.max_by_key(|p| p.t_en - p.t_st ).unwrap(); [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary parentheses around closure body [INFO] [stdout] --> src/main.rs:206:60 [INFO] [stdout] | [INFO] [stdout] 206 | let largest_rec = group.max_by_key(|p| (p.t_en - p.t_st)).unwrap(); [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 206 - let largest_rec = group.max_by_key(|p| (p.t_en - p.t_st)).unwrap(); [INFO] [stdout] 206 + let largest_rec = group.max_by_key(|p| p.t_en - p.t_st ).unwrap(); [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary parentheses around closure body [INFO] [stdout] --> src/main.rs:206:60 [INFO] [stdout] | [INFO] [stdout] 206 | let largest_rec = group.max_by_key(|p| (p.t_en - p.t_st)).unwrap(); [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 206 - let largest_rec = group.max_by_key(|p| (p.t_en - p.t_st)).unwrap(); [INFO] [stdout] 206 + let largest_rec = group.max_by_key(|p| p.t_en - p.t_st ).unwrap(); [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/annotate.rs:6:26 [INFO] [stdout] | [INFO] [stdout] 6 | fn find_bed_overlaps(&self, rec: &bed::Record) -> Vec>; [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 6 | fn find_bed_overlaps(&self, rec: &bed::Record) -> Vec>; [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/annotate.rs:10:26 [INFO] [stdout] | [INFO] [stdout] 10 | fn find_bed_overlaps(&self, rec: &bed::Record) -> Vec> { [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 10 | fn find_bed_overlaps(&self, rec: &bed::Record) -> Vec> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary parentheses around closure body [INFO] [stdout] --> src/main.rs:206:60 [INFO] [stdout] | [INFO] [stdout] 206 | let largest_rec = group.max_by_key(|p| (p.t_en - p.t_st)).unwrap(); [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 206 - let largest_rec = group.max_by_key(|p| (p.t_en - p.t_st)).unwrap(); [INFO] [stdout] 206 + let largest_rec = group.max_by_key(|p| p.t_en - p.t_st ).unwrap(); [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 3m 16s [INFO] running `Command { std: "docker" "inspect" "e236bcc9996ae3bf35382d0d26d8373e3db4ba8561a91253b3d50c691a12ee28", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e236bcc9996ae3bf35382d0d26d8373e3db4ba8561a91253b3d50c691a12ee28", kill_on_drop: false }` [INFO] [stdout] e236bcc9996ae3bf35382d0d26d8373e3db4ba8561a91253b3d50c691a12ee28