[INFO] cloning repository https://github.com/oicr-gsi/barcodex-rs
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/oicr-gsi/barcodex-rs" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Foicr-gsi%2Fbarcodex-rs", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Foicr-gsi%2Fbarcodex-rs'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 192d1d201dd44715945965621224021ec55e1c43
[INFO] checking oicr-gsi/barcodex-rs against master#642c19bfc3a5c1de985bf5d0cc8207ac9d22708a for pr-148577
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Foicr-gsi%2Fbarcodex-rs" "/workspace/builds/worker-1-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/oicr-gsi/barcodex-rs
[INFO] finished tweaking git repo https://github.com/oicr-gsi/barcodex-rs
[INFO] tweaked toml for git repo https://github.com/oicr-gsi/barcodex-rs written to /workspace/builds/worker-1-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/oicr-gsi/barcodex-rs on toolchain 642c19bfc3a5c1de985bf5d0cc8207ac9d22708a
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+642c19bfc3a5c1de985bf5d0cc8207ac9d22708a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/oicr-gsi/barcodex-rs already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+642c19bfc3a5c1de985bf5d0cc8207ac9d22708a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded bio-types v0.7.0
[INFO] [stderr]   Downloaded multimap v0.6.0
[INFO] [stderr]   Downloaded bytecount v0.6.0
[INFO] [stderr]   Downloaded snafu v0.6.8
[INFO] [stderr]   Downloaded snafu-derive v0.6.8
[INFO] [stderr]   Downloaded statrs v0.12.0
[INFO] [stderr]   Downloaded os_str_bytes v2.3.1
[INFO] [stderr]   Downloaded bio v0.31.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+642c19bfc3a5c1de985bf5d0cc8207ac9d22708a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 0f7760cf3970ac30705c3f5239ae95ac297e850f862554c6d59485ea3530a9de
[INFO] running `Command { std: "docker" "start" "-a" "0f7760cf3970ac30705c3f5239ae95ac297e850f862554c6d59485ea3530a9de", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "0f7760cf3970ac30705c3f5239ae95ac297e850f862554c6d59485ea3530a9de", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0f7760cf3970ac30705c3f5239ae95ac297e850f862554c6d59485ea3530a9de", kill_on_drop: false }`
[INFO] [stdout] 0f7760cf3970ac30705c3f5239ae95ac297e850f862554c6d59485ea3530a9de
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+642c19bfc3a5c1de985bf5d0cc8207ac9d22708a" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 7126add0d3a700feae01804fc21604aa44e513369a81fe5247ce609bb229e023
[INFO] running `Command { std: "docker" "start" "-a" "7126add0d3a700feae01804fc21604aa44e513369a81fe5247ce609bb229e023", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.19
[INFO] [stderr]    Compiling syn v1.0.36
[INFO] [stderr]    Compiling serde_derive v1.0.114
[INFO] [stderr]    Compiling libc v0.2.73
[INFO] [stderr]    Compiling serde v1.0.114
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling num-traits v0.2.12
[INFO] [stderr]    Compiling proc-macro-error-attr v0.4.12
[INFO] [stderr]    Compiling proc-macro-error v0.4.12
[INFO] [stderr]    Compiling num-integer v0.1.43
[INFO] [stderr]    Compiling hashbrown v0.8.1
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]     Checking aho-corasick v0.7.13
[INFO] [stderr]     Checking regex-automata v0.1.9
[INFO] [stderr]    Compiling indexmap v1.5.0
[INFO] [stderr]    Compiling ndarray v0.13.1
[INFO] [stderr]     Checking csv-core v0.1.10
[INFO] [stderr]    Compiling bio v0.31.0
[INFO] [stderr]    Compiling serde_json v1.0.57
[INFO] [stderr]     Checking fixedbitset v0.1.9
[INFO] [stderr]     Checking bit-vec v0.6.2
[INFO] [stderr]     Checking ordermap v0.3.5
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking adler v0.2.3
[INFO] [stderr]     Checking textwrap v0.11.0
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking os_str_bytes v2.3.1
[INFO] [stderr]     Checking termcolor v1.1.0
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking bytecount v0.6.0
[INFO] [stderr]     Checking bit-set v0.5.2
[INFO] [stderr]     Checking miniz_oxide v0.4.0
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking regex v1.3.9
[INFO] [stderr]     Checking petgraph v0.4.13
[INFO] [stderr]    Compiling quote v1.0.7
[INFO] [stderr]     Checking getrandom v0.1.14
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking flate2 v1.0.16
[INFO] [stderr]     Checking rand_core v0.5.1
[INFO] [stderr]     Checking approx v0.3.2
[INFO] [stderr]     Checking ordered-float v1.1.0
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking rand_chacha v0.2.2
[INFO] [stderr]     Checking rand v0.7.3
[INFO] [stderr]     Checking statrs v0.12.0
[INFO] [stderr]    Compiling syn-mid v0.5.0
[INFO] [stderr]    Compiling snafu-derive v0.6.8
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling strum_macros v0.18.0
[INFO] [stderr]    Compiling clap_derive v3.0.0-beta.1
[INFO] [stderr]     Checking snafu v0.6.8
[INFO] [stderr]     Checking bstr v0.2.13
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking bio-types v0.7.0
[INFO] [stderr]     Checking multimap v0.6.0
[INFO] [stderr]     Checking bv v0.11.1
[INFO] [stderr]     Checking clap v3.0.0-beta.1
[INFO] [stderr]     Checking csv v1.1.3
[INFO] [stderr]     Checking barcodex-rs v0.1.2 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 21.08s
[INFO] running `Command { std: "docker" "inspect" "7126add0d3a700feae01804fc21604aa44e513369a81fe5247ce609bb229e023", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7126add0d3a700feae01804fc21604aa44e513369a81fe5247ce609bb229e023", kill_on_drop: false }`
[INFO] [stdout] 7126add0d3a700feae01804fc21604aa44e513369a81fe5247ce609bb229e023