[INFO] cloning repository https://github.com/cagret/rustic-onika [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/cagret/rustic-onika" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fcagret%2Frustic-onika", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fcagret%2Frustic-onika'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 853e398afc08e3b7c0849d0d0f0d2fe1795a892d [INFO] checking cagret/rustic-onika against master#642c19bfc3a5c1de985bf5d0cc8207ac9d22708a for pr-148577 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fcagret%2Frustic-onika" "/workspace/builds/worker-0-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc1/source'... 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[INFO] started tweaking git repo https://github.com/cagret/rustic-onika [INFO] finished tweaking git repo https://github.com/cagret/rustic-onika [INFO] tweaked toml for git repo https://github.com/cagret/rustic-onika written to /workspace/builds/worker-0-tc1/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/cagret/rustic-onika on toolchain 642c19bfc3a5c1de985bf5d0cc8207ac9d22708a [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+642c19bfc3a5c1de985bf5d0cc8207ac9d22708a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/cagret/rustic-onika already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+642c19bfc3a5c1de985bf5d0cc8207ac9d22708a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded zstd-safe v4.1.0+zstd.1.5.0 [INFO] [stderr] Downloaded zstd v0.8.3+zstd.1.5.0 [INFO] [stderr] Downloaded zstd-sys v1.6.0+zstd.1.5.0 [INFO] [stderr] Downloaded zstr v0.1.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+642c19bfc3a5c1de985bf5d0cc8207ac9d22708a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] c94289329e37e5314a1f48b7b70cd96494782edb75017828d5e3c0e94b7f24e7 [INFO] running `Command { std: "docker" "start" "-a" "c94289329e37e5314a1f48b7b70cd96494782edb75017828d5e3c0e94b7f24e7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "c94289329e37e5314a1f48b7b70cd96494782edb75017828d5e3c0e94b7f24e7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c94289329e37e5314a1f48b7b70cd96494782edb75017828d5e3c0e94b7f24e7", kill_on_drop: false }` [INFO] [stdout] c94289329e37e5314a1f48b7b70cd96494782edb75017828d5e3c0e94b7f24e7 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+642c19bfc3a5c1de985bf5d0cc8207ac9d22708a" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] d5cab41593e6195e278df8bc422d6960029910f84fe4dd2502c727dc32734c8b [INFO] running `Command { std: "docker" "start" "-a" "d5cab41593e6195e278df8bc422d6960029910f84fe4dd2502c727dc32734c8b", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.64 [INFO] [stderr] Compiling quote v1.0.29 [INFO] [stderr] Compiling unicode-ident v1.0.10 [INFO] [stderr] Compiling crossbeam-utils v0.8.16 [INFO] [stderr] Compiling libc v0.2.147 [INFO] [stderr] Compiling memoffset v0.9.0 [INFO] [stderr] Compiling crossbeam-epoch v0.9.15 [INFO] [stderr] Checking unicode-width v0.1.10 [INFO] [stderr] Compiling zstd-safe v4.1.0+zstd.1.5.0 [INFO] [stderr] Compiling unicode-segmentation v1.10.1 [INFO] [stderr] Compiling rayon-core v1.11.0 [INFO] [stderr] Checking textwrap v0.11.0 [INFO] [stderr] Checking num_cpus v1.16.0 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Checking regex-syntax v0.7.4 [INFO] [stderr] Checking ansi_term v0.12.1 [INFO] [stderr] Checking either v1.8.1 [INFO] [stderr] Checking clap v2.34.0 [INFO] [stderr] Checking getopts v0.2.21 [INFO] [stderr] Checking arrayvec v0.5.2 [INFO] [stderr] Compiling jobserver v0.1.26 [INFO] [stderr] Compiling heck v0.3.3 [INFO] [stderr] Checking crossbeam-channel v0.5.8 [INFO] [stderr] Compiling cc v1.0.79 [INFO] [stderr] Checking crossbeam-deque v0.8.3 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Checking regex-automata v0.3.2 [INFO] [stderr] Checking rayon v1.7.0 [INFO] [stderr] Compiling zstd-sys v1.6.0+zstd.1.5.0 [INFO] [stderr] Checking regex v1.9.1 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Compiling structopt-derive v0.4.18 [INFO] [stderr] Checking structopt v0.3.26 [INFO] [stderr] Compiling zstr v0.1.1 [INFO] [stderr] Checking zstd v0.8.3+zstd.1.5.0 [INFO] [stderr] Checking rustic-onika v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `rayon::prelude` [INFO] [stdout] --> src/index.rs:10:5 [INFO] [stdout] | [INFO] [stdout] 10 | use rayon::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `buckets` [INFO] [stdout] --> src/index.rs:55:13 [INFO] [stdout] | [INFO] [stdout] 55 | let buckets = vec![Vec::::new(); fingerprint_range as usize]; [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_buckets` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `buckets_pos` [INFO] [stdout] --> src/index.rs:56:13 [INFO] [stdout] | [INFO] [stdout] 56 | let buckets_pos = vec![Vec::::new(); fingerprint_range as usize]; [INFO] [stdout] | ^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_buckets_pos` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `query`, `kmer`, `sketch`, `word`, and `egs` are never read [INFO] [stdout] --> src/main.rs:24:5 [INFO] [stdout] | [INFO] [stdout] 11 | struct Options { [INFO] [stdout] | ------- fields in this struct [INFO] [stdout] ... [INFO] [stdout] 24 | query: Option, [INFO] [stdout] | ^^^^^ [INFO] [stdout] ... [INFO] [stdout] 32 | kmer: Option, [INFO] [stdout] | ^^^^ [INFO] [stdout] ... [INFO] [stdout] 39 | sketch: Option, [INFO] [stdout] | ^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 46 | word: Option, [INFO] [stdout] | ^^^^ [INFO] [stdout] ... [INFO] [stdout] 53 | egs: Option, [INFO] [stdout] | ^^^ [INFO] [stdout] | [INFO] [stdout] = note: `Options` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type alias `Kmer` is never used [INFO] [stdout] --> src/index.rs:12:6 [INFO] [stdout] | [INFO] [stdout] 12 | type Kmer = u64; [INFO] [stdout] | ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `m`, `maximal_remainder`, `mask_fingerprint`, `mi`, `min_score`, and `filename` are never read [INFO] [stdout] --> src/index.rs:22:5 [INFO] [stdout] | [INFO] [stdout] 17 | pub struct Index { [INFO] [stdout] | ----- fields in this struct [INFO] [stdout] ... [INFO] [stdout] 22 | m: u32, // Minhash size [INFO] [stdout] | ^ [INFO] [stdout] ... [INFO] [stdout] 27 | maximal_remainder: u32, // 2^H-1 [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] 28 | lf: u32, // log2(F) [INFO] [stdout] 29 | mask_fingerprint: u64, // 2^(64-lf)-1 [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] 30 | mi: u64, // -1 [INFO] [stdout] | ^^ [INFO] [stdout] 31 | offset_update_kmer: u64, [INFO] [stdout] 32 | min_score: u32, [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] 33 | filename: String, [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated items `cleanup`, `asm_log2`, `get_data_type`, `Biogetline`, `query_sketch`, and `merge_sketch` are never used [INFO] [stdout] --> src/index.rs:104:8 [INFO] [stdout] | [INFO] [stdout] 41 | impl Index { [INFO] [stdout] | ---------- associated items in this implementation [INFO] [stdout] ... [INFO] [stdout] 104 | fn cleanup(&mut self) { [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 121 | pub fn asm_log2(&self, _x: u64) -> u64 { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 125 | pub fn get_data_type(&self, filename: &str) -> char { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 265 | pub fn Biogetline(file_path: &str, result: &mut String, header: &mut String) { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 417 | pub fn query_sketch(&self, sketch: &[u64]) -> Vec { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 439 | pub fn merge_sketch(&self, sketch1: &mut [i32], sketch2: &[i32]) { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `S_kmer` should have a snake case name [INFO] [stdout] --> src/index.rs:235:17 [INFO] [stdout] | [INFO] [stdout] 235 | let mut S_kmer = self.str2numstrand(&reference[0..(self.k as usize - 1)]); [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case (notice the capitalization): `s_kmer` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `RC_kmer` should have a snake case name [INFO] [stdout] --> src/index.rs:236:17 [INFO] [stdout] | [INFO] [stdout] 236 | let mut RC_kmer = self.rcb(S_kmer); [INFO] [stdout] | ^^^^^^^ help: convert the identifier to snake case: `rc_kmer` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `Biogetline` should have a snake case name [INFO] [stdout] --> src/index.rs:265:12 [INFO] [stdout] | [INFO] [stdout] 265 | pub fn Biogetline(file_path: &str, result: &mut String, header: &mut String) { [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to snake case: `biogetline` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `update_kmer_RC` should have a snake case name [INFO] [stdout] --> src/index.rs:379:12 [INFO] [stdout] | [INFO] [stdout] 379 | pub fn update_kmer_RC(&self, min: &mut u64, nuc: char) { [INFO] [stdout] | ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `update_kmer_rc` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rayon::prelude` [INFO] [stdout] --> src/index.rs:10:5 [INFO] [stdout] | [INFO] [stdout] 10 | use rayon::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `buckets` [INFO] [stdout] --> src/index.rs:55:13 [INFO] [stdout] | [INFO] [stdout] 55 | let buckets = vec![Vec::::new(); fingerprint_range as usize]; [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_buckets` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `buckets_pos` [INFO] [stdout] --> src/index.rs:56:13 [INFO] [stdout] | [INFO] [stdout] 56 | let buckets_pos = vec![Vec::::new(); fingerprint_range as usize]; [INFO] [stdout] | ^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_buckets_pos` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `query`, `kmer`, `sketch`, `word`, and `egs` are never read [INFO] [stdout] --> src/main.rs:24:5 [INFO] [stdout] | [INFO] [stdout] 11 | struct Options { [INFO] [stdout] | ------- fields in this struct [INFO] [stdout] ... [INFO] [stdout] 24 | query: Option, [INFO] [stdout] | ^^^^^ [INFO] [stdout] ... [INFO] [stdout] 32 | kmer: Option, [INFO] [stdout] | ^^^^ [INFO] [stdout] ... [INFO] [stdout] 39 | sketch: Option, [INFO] [stdout] | ^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 46 | word: Option, [INFO] [stdout] | ^^^^ [INFO] [stdout] ... [INFO] [stdout] 53 | egs: Option, [INFO] [stdout] | ^^^ [INFO] [stdout] | [INFO] [stdout] = note: `Options` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type alias `Kmer` is never used [INFO] [stdout] --> src/index.rs:12:6 [INFO] [stdout] | [INFO] [stdout] 12 | type Kmer = u64; [INFO] [stdout] | ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `m`, `maximal_remainder`, `mask_fingerprint`, `mi`, `min_score`, and `filename` are never read [INFO] [stdout] --> src/index.rs:22:5 [INFO] [stdout] | [INFO] [stdout] 17 | pub struct Index { [INFO] [stdout] | ----- fields in this struct [INFO] [stdout] ... [INFO] [stdout] 22 | m: u32, // Minhash size [INFO] [stdout] | ^ [INFO] [stdout] ... [INFO] [stdout] 27 | maximal_remainder: u32, // 2^H-1 [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] 28 | lf: u32, // log2(F) [INFO] [stdout] 29 | mask_fingerprint: u64, // 2^(64-lf)-1 [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] 30 | mi: u64, // -1 [INFO] [stdout] | ^^ [INFO] [stdout] 31 | offset_update_kmer: u64, [INFO] [stdout] 32 | min_score: u32, [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] 33 | filename: String, [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated items `cleanup`, `asm_log2`, `get_data_type`, `Biogetline`, `query_sketch`, and `merge_sketch` are never used [INFO] [stdout] --> src/index.rs:104:8 [INFO] [stdout] | [INFO] [stdout] 41 | impl Index { [INFO] [stdout] | ---------- associated items in this implementation [INFO] [stdout] ... [INFO] [stdout] 104 | fn cleanup(&mut self) { [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 121 | pub fn asm_log2(&self, _x: u64) -> u64 { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 125 | pub fn get_data_type(&self, filename: &str) -> char { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 265 | pub fn Biogetline(file_path: &str, result: &mut String, header: &mut String) { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 417 | pub fn query_sketch(&self, sketch: &[u64]) -> Vec { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 439 | pub fn merge_sketch(&self, sketch1: &mut [i32], sketch2: &[i32]) { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `S_kmer` should have a snake case name [INFO] [stdout] --> src/index.rs:235:17 [INFO] [stdout] | [INFO] [stdout] 235 | let mut S_kmer = self.str2numstrand(&reference[0..(self.k as usize - 1)]); [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case (notice the capitalization): `s_kmer` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `RC_kmer` should have a snake case name [INFO] [stdout] --> src/index.rs:236:17 [INFO] [stdout] | [INFO] [stdout] 236 | let mut RC_kmer = self.rcb(S_kmer); [INFO] [stdout] | ^^^^^^^ help: convert the identifier to snake case: `rc_kmer` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `Biogetline` should have a snake case name [INFO] [stdout] --> src/index.rs:265:12 [INFO] [stdout] | [INFO] [stdout] 265 | pub fn Biogetline(file_path: &str, result: &mut String, header: &mut String) { [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to snake case: `biogetline` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `update_kmer_RC` should have a snake case name [INFO] [stdout] --> src/index.rs:379:12 [INFO] [stdout] | [INFO] [stdout] 379 | pub fn update_kmer_RC(&self, min: &mut u64, nuc: char) { [INFO] [stdout] | ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `update_kmer_rc` [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 54s [INFO] running `Command { std: "docker" "inspect" "d5cab41593e6195e278df8bc422d6960029910f84fe4dd2502c727dc32734c8b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d5cab41593e6195e278df8bc422d6960029910f84fe4dd2502c727dc32734c8b", kill_on_drop: false }` [INFO] [stdout] d5cab41593e6195e278df8bc422d6960029910f84fe4dd2502c727dc32734c8b