[INFO] cloning repository https://github.com/stela2502/hmm_mapper
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/stela2502/hmm_mapper" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstela2502%2Fhmm_mapper", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstela2502%2Fhmm_mapper'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] becfa118b06950816e65168b8c92b2e9786dd0d0
[INFO] checking stela2502/hmm_mapper against try#4f260f0f20b3133d20cfb50353c0221943af5796+rustflags=-Dunmustuse_in_always_ok for pr-148577
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstela2502%2Fhmm_mapper" "/workspace/builds/worker-5-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/stela2502/hmm_mapper
[INFO] finished tweaking git repo https://github.com/stela2502/hmm_mapper
[INFO] tweaked toml for git repo https://github.com/stela2502/hmm_mapper written to /workspace/builds/worker-5-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/stela2502/hmm_mapper on toolchain 4f260f0f20b3133d20cfb50353c0221943af5796
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+4f260f0f20b3133d20cfb50353c0221943af5796" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/stela2502/hmm_mapper already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+4f260f0f20b3133d20cfb50353c0221943af5796" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+4f260f0f20b3133d20cfb50353c0221943af5796" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] bf7e7bf519db65502499681da04273013440c9bd77c64899787507b6cda3a824
[INFO] running `Command { std: "docker" "start" "-a" "bf7e7bf519db65502499681da04273013440c9bd77c64899787507b6cda3a824", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "bf7e7bf519db65502499681da04273013440c9bd77c64899787507b6cda3a824", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "bf7e7bf519db65502499681da04273013440c9bd77c64899787507b6cda3a824", kill_on_drop: false }`
[INFO] [stdout] bf7e7bf519db65502499681da04273013440c9bd77c64899787507b6cda3a824
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid -Dunmustuse_in_always_ok" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+4f260f0f20b3133d20cfb50353c0221943af5796" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] aa662d0e98f7a3266c1a375e08dd524d2f8a3c5f3902c3b3599025d708e1f400
[INFO] running `Command { std: "docker" "start" "-a" "aa662d0e98f7a3266c1a375e08dd524d2f8a3c5f3902c3b3599025d708e1f400", kill_on_drop: false }`
[INFO] [stderr]    Compiling cc v1.1.15
[INFO] [stderr]    Compiling libc v0.2.158
[INFO] [stderr]    Compiling crossbeam-utils v0.8.20
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling indexmap v1.9.3
[INFO] [stderr]    Compiling quote v1.0.37
[INFO] [stderr]     Checking miniz_oxide v0.8.0
[INFO] [stderr]     Checking os_str_bytes v6.6.1
[INFO] [stderr]     Checking clap_lex v0.2.4
[INFO] [stderr]     Checking buf_redux v0.8.4
[INFO] [stderr]     Checking crossbeam-epoch v0.9.18
[INFO] [stderr]     Checking strsim v0.10.0
[INFO] [stderr]     Checking textwrap v0.16.1
[INFO] [stderr]     Checking bytecount v0.6.8
[INFO] [stderr]     Checking either v1.13.0
[INFO] [stderr]     Checking flate2 v1.0.33
[INFO] [stderr]     Checking crossbeam-deque v0.8.5
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking rayon-core v1.12.1
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]     Checking rayon v1.10.0
[INFO] [stderr]     Checking xz2 v0.1.7
[INFO] [stderr]     Checking bzip2 v0.4.4
[INFO] [stderr]     Checking needletail v0.4.1
[INFO] [stderr]    Compiling clap_derive v3.2.25
[INFO] [stderr]     Checking clap v3.2.25
[INFO] [stderr]     Checking hmm_mapper v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused label
[INFO] [stdout]    --> src/HMM.rs:325:9
[INFO] [stdout]     |
[INFO] [stdout] 325 |         'main: for t in start+1..this_end {
[INFO] [stdout]     |         ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_labels)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused label
[INFO] [stdout]    --> src/HMM.rs:325:9
[INFO] [stdout]     |
[INFO] [stdout] 325 |         'main: for t in start+1..this_end {
[INFO] [stdout]     |         ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_labels)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `other`
[INFO] [stdout]    --> src/HMM.rs:128:13
[INFO] [stdout]     |
[INFO] [stdout] 128 |             other => {
[INFO] [stdout]     |             ^^^^^ help: if this is intentional, prefix it with an underscore: `_other`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/HMM.rs:346:13
[INFO] [stdout]     |
[INFO] [stdout] 346 |         let mut result: Vec<(String, f64)> = self.names.iter()
[INFO] [stdout]     |             ----^^^^^^
[INFO] [stdout]     |             |
[INFO] [stdout]     |             help: remove this `mut`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_mut)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `total_prob`
[INFO] [stdout]    --> src/HMM.rs:343:13
[INFO] [stdout]     |
[INFO] [stdout] 343 |         let total_prob = (max_final_prob).exp() ;
[INFO] [stdout]     |             ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_total_prob`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unreachable pattern
[INFO] [stdout]   --> src/VDJmodeler.rs:37:6
[INFO] [stdout]    |
[INFO] [stdout] 37 |                     _ => unreachable!(),
[INFO] [stdout]    |                     ^ no value can reach this
[INFO] [stdout]    |
[INFO] [stdout] note: multiple earlier patterns match some of the same values
[INFO] [stdout]   --> src/VDJmodeler.rs:37:6
[INFO] [stdout]    |
[INFO] [stdout] 34 |                     Chain::V => 0,
[INFO] [stdout]    |                     -------- matches some of the same values
[INFO] [stdout] 35 |                     Chain::D => panic!("A light chain has no D segement!"),
[INFO] [stdout]    |                     -------- matches some of the same values
[INFO] [stdout] 36 |                     Chain::J => data[0],
[INFO] [stdout]    |                     -------- matches some of the same values
[INFO] [stdout] 37 |                     _ => unreachable!(),
[INFO] [stdout]    |                     ^ collectively making this unreachable
[INFO] [stdout]    = note: `#[warn(unreachable_patterns)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unreachable pattern
[INFO] [stdout]   --> src/VDJmodeler.rs:67:4
[INFO] [stdout]    |
[INFO] [stdout] 67 |             _ => unreachable!(),
[INFO] [stdout]    |             ^ no value can reach this
[INFO] [stdout]    |
[INFO] [stdout] note: multiple earlier patterns match some of the same values
[INFO] [stdout]   --> src/VDJmodeler.rs:67:4
[INFO] [stdout]    |
[INFO] [stdout] 60 |             SequenceModel::IGH => 0,
[INFO] [stdout]    |             ------------------ matches some of the same values
[INFO] [stdout] 61 |             SequenceModel::IGL => 1,
[INFO] [stdout]    |             ------------------ matches some of the same values
[INFO] [stdout] 62 |             SequenceModel::IGK => 2,
[INFO] [stdout]    |             ------------------ matches some of the same values
[INFO] [stdout] 63 |             SequenceModel::TRA => 3, 
[INFO] [stdout]    |             ------------------ matches some of the same values
[INFO] [stdout] ...
[INFO] [stdout] 67 |             _ => unreachable!(),
[INFO] [stdout]    |             ^ ...and 3 other patterns collectively make this unreachable
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unreachable pattern
[INFO] [stdout]   --> src/VDJmodeler.rs:99:13
[INFO] [stdout]    |
[INFO] [stdout] 99 |             _ => unreachable!(),
[INFO] [stdout]    |             ^ no value can reach this
[INFO] [stdout]    |
[INFO] [stdout] note: multiple earlier patterns match some of the same values
[INFO] [stdout]   --> src/VDJmodeler.rs:99:13
[INFO] [stdout]    |
[INFO] [stdout] 91 |             SequenceModel::IGH| SequenceModel::TRA | SequenceModel::TRG => {
[INFO] [stdout]    |             ----------------------------------------------------------- matches some of the same values
[INFO] [stdout] ...
[INFO] [stdout] 95 |             SequenceModel::IGL | SequenceModel::IGK | SequenceModel::TRB | SequenceModel::TRD => {
[INFO] [stdout]    |             --------------------------------------------------------------------------------- matches some of the same values
[INFO] [stdout] ...
[INFO] [stdout] 99 |             _ => unreachable!(),
[INFO] [stdout]    |             ^ collectively making this unreachable
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unreachable pattern
[INFO] [stdout]    --> src/VDJmodeler.rs:112:4
[INFO] [stdout]     |
[INFO] [stdout] 112 |             _ => unreachable!(),
[INFO] [stdout]     |             ^ no value can reach this
[INFO] [stdout]     |
[INFO] [stdout] note: multiple earlier patterns match some of the same values
[INFO] [stdout]    --> src/VDJmodeler.rs:112:4
[INFO] [stdout]     |
[INFO] [stdout] 105 |             SequenceModel::IGH => "IGH-VDJ".to_string(),
[INFO] [stdout]     |             ------------------ matches some of the same values
[INFO] [stdout] 106 |             SequenceModel::IGL => "IGL-VDJ".to_string(),
[INFO] [stdout]     |             ------------------ matches some of the same values
[INFO] [stdout] 107 |             SequenceModel::IGK => "IGK-VDJ".to_string(),
[INFO] [stdout]     |             ------------------ matches some of the same values
[INFO] [stdout] 108 |             SequenceModel::TRA => "TRA-VDJ".to_string(),
[INFO] [stdout]     |             ------------------ matches some of the same values
[INFO] [stdout] ...
[INFO] [stdout] 112 |             _ => unreachable!(),
[INFO] [stdout]     |             ^ ...and 3 other patterns collectively make this unreachable
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unreachable pattern
[INFO] [stdout]    --> src/VDJmodeler.rs:124:4
[INFO] [stdout]     |
[INFO] [stdout] 124 |             _ => unreachable!(),
[INFO] [stdout]     |             ^ no value can reach this
[INFO] [stdout]     |
[INFO] [stdout] note: multiple earlier patterns match some of the same values
[INFO] [stdout]    --> src/VDJmodeler.rs:124:4
[INFO] [stdout]     |
[INFO] [stdout] 118 |             SequenceModel::IGH | SequenceModel::TRB | SequenceModel::TRD => {
[INFO] [stdout]     |             ------------------------------------------------------------ matches some of the same values
[INFO] [stdout] ...
[INFO] [stdout] 121 |             SequenceModel::IGL | SequenceModel::IGK | SequenceModel::TRA | SequenceModel::TRG => {
[INFO] [stdout]     |             --------------------------------------------------------------------------------- matches some of the same values
[INFO] [stdout] ...
[INFO] [stdout] 124 |             _ => unreachable!(),
[INFO] [stdout]     |             ^ collectively making this unreachable
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/VDJmodeler.rs:289:22
[INFO] [stdout]     |
[INFO] [stdout] 289 |                     let mut hmm_model = HMMmodel::new(seq_mod.clone(), data.iter().sum());
[INFO] [stdout]     |                         ----^^^^^^^^^
[INFO] [stdout]     |                         |
[INFO] [stdout]     |                         help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: module `HMM` should have a snake case name
[INFO] [stdout]  --> src/lib.rs:1:9
[INFO] [stdout]   |
[INFO] [stdout] 1 | pub mod HMM;
[INFO] [stdout]   |         ^^^ help: convert the identifier to snake case: `hmm`
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: module `VDJmodeler` should have a snake case name
[INFO] [stdout]  --> src/lib.rs:3:9
[INFO] [stdout]   |
[INFO] [stdout] 3 | pub mod VDJmodeler;
[INFO] [stdout]   |         ^^^^^^^^^^ help: convert the identifier to snake case: `vdjmodeler`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `other`
[INFO] [stdout]    --> src/HMM.rs:128:13
[INFO] [stdout]     |
[INFO] [stdout] 128 |             other => {
[INFO] [stdout]     |             ^^^^^ help: if this is intentional, prefix it with an underscore: `_other`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/HMM.rs:346:13
[INFO] [stdout]     |
[INFO] [stdout] 346 |         let mut result: Vec<(String, f64)> = self.names.iter()
[INFO] [stdout]     |             ----^^^^^^
[INFO] [stdout]     |             |
[INFO] [stdout]     |             help: remove this `mut`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_mut)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `total_prob`
[INFO] [stdout]    --> src/HMM.rs:343:13
[INFO] [stdout]     |
[INFO] [stdout] 343 |         let total_prob = (max_final_prob).exp() ;
[INFO] [stdout]     |             ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_total_prob`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unreachable pattern
[INFO] [stdout]   --> src/VDJmodeler.rs:37:6
[INFO] [stdout]    |
[INFO] [stdout] 37 |                     _ => unreachable!(),
[INFO] [stdout]    |                     ^ no value can reach this
[INFO] [stdout]    |
[INFO] [stdout] note: multiple earlier patterns match some of the same values
[INFO] [stdout]   --> src/VDJmodeler.rs:37:6
[INFO] [stdout]    |
[INFO] [stdout] 34 |                     Chain::V => 0,
[INFO] [stdout]    |                     -------- matches some of the same values
[INFO] [stdout] 35 |                     Chain::D => panic!("A light chain has no D segement!"),
[INFO] [stdout]    |                     -------- matches some of the same values
[INFO] [stdout] 36 |                     Chain::J => data[0],
[INFO] [stdout]    |                     -------- matches some of the same values
[INFO] [stdout] 37 |                     _ => unreachable!(),
[INFO] [stdout]    |                     ^ collectively making this unreachable
[INFO] [stdout]    = note: `#[warn(unreachable_patterns)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unreachable pattern
[INFO] [stdout]   --> src/VDJmodeler.rs:67:4
[INFO] [stdout]    |
[INFO] [stdout] 67 |             _ => unreachable!(),
[INFO] [stdout]    |             ^ no value can reach this
[INFO] [stdout]    |
[INFO] [stdout] note: multiple earlier patterns match some of the same values
[INFO] [stdout]   --> src/VDJmodeler.rs:67:4
[INFO] [stdout]    |
[INFO] [stdout] 60 |             SequenceModel::IGH => 0,
[INFO] [stdout]    |             ------------------ matches some of the same values
[INFO] [stdout] 61 |             SequenceModel::IGL => 1,
[INFO] [stdout]    |             ------------------ matches some of the same values
[INFO] [stdout] 62 |             SequenceModel::IGK => 2,
[INFO] [stdout]    |             ------------------ matches some of the same values
[INFO] [stdout] 63 |             SequenceModel::TRA => 3, 
[INFO] [stdout]    |             ------------------ matches some of the same values
[INFO] [stdout] ...
[INFO] [stdout] 67 |             _ => unreachable!(),
[INFO] [stdout]    |             ^ ...and 3 other patterns collectively make this unreachable
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unreachable pattern
[INFO] [stdout]   --> src/VDJmodeler.rs:99:13
[INFO] [stdout]    |
[INFO] [stdout] 99 |             _ => unreachable!(),
[INFO] [stdout]    |             ^ no value can reach this
[INFO] [stdout]    |
[INFO] [stdout] note: multiple earlier patterns match some of the same values
[INFO] [stdout]   --> src/VDJmodeler.rs:99:13
[INFO] [stdout]    |
[INFO] [stdout] 91 |             SequenceModel::IGH| SequenceModel::TRA | SequenceModel::TRG => {
[INFO] [stdout]    |             ----------------------------------------------------------- matches some of the same values
[INFO] [stdout] ...
[INFO] [stdout] 95 |             SequenceModel::IGL | SequenceModel::IGK | SequenceModel::TRB | SequenceModel::TRD => {
[INFO] [stdout]    |             --------------------------------------------------------------------------------- matches some of the same values
[INFO] [stdout] ...
[INFO] [stdout] 99 |             _ => unreachable!(),
[INFO] [stdout]    |             ^ collectively making this unreachable
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unreachable pattern
[INFO] [stdout]    --> src/VDJmodeler.rs:112:4
[INFO] [stdout]     |
[INFO] [stdout] 112 |             _ => unreachable!(),
[INFO] [stdout]     |             ^ no value can reach this
[INFO] [stdout]     |
[INFO] [stdout] note: multiple earlier patterns match some of the same values
[INFO] [stdout]    --> src/VDJmodeler.rs:112:4
[INFO] [stdout]     |
[INFO] [stdout] 105 |             SequenceModel::IGH => "IGH-VDJ".to_string(),
[INFO] [stdout]     |             ------------------ matches some of the same values
[INFO] [stdout] 106 |             SequenceModel::IGL => "IGL-VDJ".to_string(),
[INFO] [stdout]     |             ------------------ matches some of the same values
[INFO] [stdout] 107 |             SequenceModel::IGK => "IGK-VDJ".to_string(),
[INFO] [stdout]     |             ------------------ matches some of the same values
[INFO] [stdout] 108 |             SequenceModel::TRA => "TRA-VDJ".to_string(),
[INFO] [stdout]     |             ------------------ matches some of the same values
[INFO] [stdout] ...
[INFO] [stdout] 112 |             _ => unreachable!(),
[INFO] [stdout]     |             ^ ...and 3 other patterns collectively make this unreachable
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unreachable pattern
[INFO] [stdout]    --> src/VDJmodeler.rs:124:4
[INFO] [stdout]     |
[INFO] [stdout] 124 |             _ => unreachable!(),
[INFO] [stdout]     |             ^ no value can reach this
[INFO] [stdout]     |
[INFO] [stdout] note: multiple earlier patterns match some of the same values
[INFO] [stdout]    --> src/VDJmodeler.rs:124:4
[INFO] [stdout]     |
[INFO] [stdout] 118 |             SequenceModel::IGH | SequenceModel::TRB | SequenceModel::TRD => {
[INFO] [stdout]     |             ------------------------------------------------------------ matches some of the same values
[INFO] [stdout] ...
[INFO] [stdout] 121 |             SequenceModel::IGL | SequenceModel::IGK | SequenceModel::TRA | SequenceModel::TRG => {
[INFO] [stdout]     |             --------------------------------------------------------------------------------- matches some of the same values
[INFO] [stdout] ...
[INFO] [stdout] 124 |             _ => unreachable!(),
[INFO] [stdout]     |             ^ collectively making this unreachable
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/VDJmodeler.rs:289:22
[INFO] [stdout]     |
[INFO] [stdout] 289 |                     let mut hmm_model = HMMmodel::new(seq_mod.clone(), data.iter().sum());
[INFO] [stdout]     |                         ----^^^^^^^^^
[INFO] [stdout]     |                         |
[INFO] [stdout]     |                         help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: module `HMM` should have a snake case name
[INFO] [stdout]  --> src/lib.rs:1:9
[INFO] [stdout]   |
[INFO] [stdout] 1 | pub mod HMM;
[INFO] [stdout]   |         ^^^ help: convert the identifier to snake case: `hmm`
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: module `VDJmodeler` should have a snake case name
[INFO] [stdout]  --> src/lib.rs:3:9
[INFO] [stdout]   |
[INFO] [stdout] 3 | pub mod VDJmodeler;
[INFO] [stdout]   |         ^^^^^^^^^^ help: convert the identifier to snake case: `vdjmodeler`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `needletail::parser::SequenceRecord`
[INFO] [stdout]  --> src/main.rs:6:5
[INFO] [stdout]   |
[INFO] [stdout] 6 | use needletail::parser::SequenceRecord;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io::BufReader`
[INFO] [stdout]  --> src/main.rs:8:5
[INFO] [stdout]   |
[INFO] [stdout] 8 | use std::io::BufReader;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `needletail::parser::SequenceRecord`
[INFO] [stdout]  --> src/main.rs:6:5
[INFO] [stdout]   |
[INFO] [stdout] 6 | use needletail::parser::SequenceRecord;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io::BufReader`
[INFO] [stdout]  --> src/main.rs:8:5
[INFO] [stdout]   |
[INFO] [stdout] 8 | use std::io::BufReader;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `record_count` is assigned to, but never used
[INFO] [stdout]   --> src/main.rs:82:9
[INFO] [stdout]    |
[INFO] [stdout] 82 |     let mut record_count = 0;
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: consider using `_record_count` instead
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `record_count` is never read
[INFO] [stdout]   --> src/main.rs:88:17
[INFO] [stdout]    |
[INFO] [stdout] 88 |                 record_count += 1;
[INFO] [stdout]    |                 ^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = help: maybe it is overwritten before being read?
[INFO] [stdout]    = note: `#[warn(unused_assignments)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: this type will no longer be must used: Result<std::string::String, Infallible>
[INFO] [stdout]   --> src/main.rs:48:5
[INFO] [stdout]    |
[INFO] [stdout] 48 |     database: String,
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: requested on the command line with `-D unmustuse-in-always-ok`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: this type will no longer be must used: Result<std::string::String, Infallible>
[INFO] [stdout]   --> src/main.rs:51:5
[INFO] [stdout]    |
[INFO] [stdout] 51 |     fastq: String,
[INFO] [stdout]    |     ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: this type will no longer be must used: Result<std::string::String, Infallible>
[INFO] [stdout]   --> src/main.rs:54:5
[INFO] [stdout]    |
[INFO] [stdout] 54 |     outfile: String,
[INFO] [stdout]    |     ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `hmm_mapper` (bin "hmm_mapper" test) due to 3 previous errors; 4 warnings emitted
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stdout] warning: variable `record_count` is assigned to, but never used
[INFO] [stdout]   --> src/main.rs:82:9
[INFO] [stdout]    |
[INFO] [stdout] 82 |     let mut record_count = 0;
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: consider using `_record_count` instead
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `record_count` is never read
[INFO] [stdout]   --> src/main.rs:88:17
[INFO] [stdout]    |
[INFO] [stdout] 88 |                 record_count += 1;
[INFO] [stdout]    |                 ^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = help: maybe it is overwritten before being read?
[INFO] [stdout]    = note: `#[warn(unused_assignments)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: this type will no longer be must used: Result<std::string::String, Infallible>
[INFO] [stdout]   --> src/main.rs:48:5
[INFO] [stdout]    |
[INFO] [stdout] 48 |     database: String,
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: requested on the command line with `-D unmustuse-in-always-ok`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: this type will no longer be must used: Result<std::string::String, Infallible>
[INFO] [stdout]   --> src/main.rs:51:5
[INFO] [stdout]    |
[INFO] [stdout] 51 |     fastq: String,
[INFO] [stdout]    |     ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: this type will no longer be must used: Result<std::string::String, Infallible>
[INFO] [stdout]   --> src/main.rs:54:5
[INFO] [stdout]    |
[INFO] [stdout] 54 |     outfile: String,
[INFO] [stdout]    |     ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `hmm_mapper` (bin "hmm_mapper") due to 3 previous errors; 4 warnings emitted
[INFO] running `Command { std: "docker" "inspect" "aa662d0e98f7a3266c1a375e08dd524d2f8a3c5f3902c3b3599025d708e1f400", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "aa662d0e98f7a3266c1a375e08dd524d2f8a3c5f3902c3b3599025d708e1f400", kill_on_drop: false }`
[INFO] [stdout] aa662d0e98f7a3266c1a375e08dd524d2f8a3c5f3902c3b3599025d708e1f400
