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[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstela2502%2Fhmm_mapper" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }`
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[INFO] finished tweaking git repo https://github.com/stela2502/hmm_mapper
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[INFO] crate git repo https://github.com/stela2502/hmm_mapper already has a lockfile, it will not be regenerated
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[INFO] [stderr]     Checking hmm_mapper v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused label
[INFO] [stdout]    --> src/HMM.rs:325:9
[INFO] [stdout]     |
[INFO] [stdout] 325 |         'main: for t in start+1..this_end {
[INFO] [stdout]     |         ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_labels)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `other`
[INFO] [stdout]    --> src/HMM.rs:128:13
[INFO] [stdout]     |
[INFO] [stdout] 128 |             other => {
[INFO] [stdout]     |             ^^^^^ help: if this is intentional, prefix it with an underscore: `_other`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/HMM.rs:346:13
[INFO] [stdout]     |
[INFO] [stdout] 346 |         let mut result: Vec<(String, f64)> = self.names.iter()
[INFO] [stdout]     |             ----^^^^^^
[INFO] [stdout]     |             |
[INFO] [stdout]     |             help: remove this `mut`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_mut)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `total_prob`
[INFO] [stdout]    --> src/HMM.rs:343:13
[INFO] [stdout]     |
[INFO] [stdout] 343 |         let total_prob = (max_final_prob).exp() ;
[INFO] [stdout]     |             ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_total_prob`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unreachable pattern
[INFO] [stdout]   --> src/VDJmodeler.rs:37:6
[INFO] [stdout]    |
[INFO] [stdout] 37 |                     _ => unreachable!(),
[INFO] [stdout]    |                     ^ no value can reach this
[INFO] [stdout]    |
[INFO] [stdout] note: multiple earlier patterns match some of the same values
[INFO] [stdout]   --> src/VDJmodeler.rs:37:6
[INFO] [stdout]    |
[INFO] [stdout] 34 |                     Chain::V => 0,
[INFO] [stdout]    |                     -------- matches some of the same values
[INFO] [stdout] 35 |                     Chain::D => panic!("A light chain has no D segement!"),
[INFO] [stdout]    |                     -------- matches some of the same values
[INFO] [stdout] 36 |                     Chain::J => data[0],
[INFO] [stdout]    |                     -------- matches some of the same values
[INFO] [stdout] 37 |                     _ => unreachable!(),
[INFO] [stdout]    |                     ^ collectively making this unreachable
[INFO] [stdout]    = note: `#[warn(unreachable_patterns)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unreachable pattern
[INFO] [stdout]   --> src/VDJmodeler.rs:67:4
[INFO] [stdout]    |
[INFO] [stdout] 67 |             _ => unreachable!(),
[INFO] [stdout]    |             ^ no value can reach this
[INFO] [stdout]    |
[INFO] [stdout] note: multiple earlier patterns match some of the same values
[INFO] [stdout]   --> src/VDJmodeler.rs:67:4
[INFO] [stdout]    |
[INFO] [stdout] 60 |             SequenceModel::IGH => 0,
[INFO] [stdout]    |             ------------------ matches some of the same values
[INFO] [stdout] 61 |             SequenceModel::IGL => 1,
[INFO] [stdout]    |             ------------------ matches some of the same values
[INFO] [stdout] 62 |             SequenceModel::IGK => 2,
[INFO] [stdout]    |             ------------------ matches some of the same values
[INFO] [stdout] 63 |             SequenceModel::TRA => 3, 
[INFO] [stdout]    |             ------------------ matches some of the same values
[INFO] [stdout] ...
[INFO] [stdout] 67 |             _ => unreachable!(),
[INFO] [stdout]    |             ^ ...and 3 other patterns collectively make this unreachable
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unreachable pattern
[INFO] [stdout]   --> src/VDJmodeler.rs:99:13
[INFO] [stdout]    |
[INFO] [stdout] 99 |             _ => unreachable!(),
[INFO] [stdout]    |             ^ no value can reach this
[INFO] [stdout]    |
[INFO] [stdout] note: multiple earlier patterns match some of the same values
[INFO] [stdout]   --> src/VDJmodeler.rs:99:13
[INFO] [stdout]    |
[INFO] [stdout] 91 |             SequenceModel::IGH| SequenceModel::TRA | SequenceModel::TRG => {
[INFO] [stdout]    |             ----------------------------------------------------------- matches some of the same values
[INFO] [stdout] ...
[INFO] [stdout] 95 |             SequenceModel::IGL | SequenceModel::IGK | SequenceModel::TRB | SequenceModel::TRD => {
[INFO] [stdout]    |             --------------------------------------------------------------------------------- matches some of the same values
[INFO] [stdout] ...
[INFO] [stdout] 99 |             _ => unreachable!(),
[INFO] [stdout]    |             ^ collectively making this unreachable
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unreachable pattern
[INFO] [stdout]    --> src/VDJmodeler.rs:112:4
[INFO] [stdout]     |
[INFO] [stdout] 112 |             _ => unreachable!(),
[INFO] [stdout]     |             ^ no value can reach this
[INFO] [stdout]     |
[INFO] [stdout] note: multiple earlier patterns match some of the same values
[INFO] [stdout]    --> src/VDJmodeler.rs:112:4
[INFO] [stdout]     |
[INFO] [stdout] 105 |             SequenceModel::IGH => "IGH-VDJ".to_string(),
[INFO] [stdout]     |             ------------------ matches some of the same values
[INFO] [stdout] 106 |             SequenceModel::IGL => "IGL-VDJ".to_string(),
[INFO] [stdout]     |             ------------------ matches some of the same values
[INFO] [stdout] 107 |             SequenceModel::IGK => "IGK-VDJ".to_string(),
[INFO] [stdout]     |             ------------------ matches some of the same values
[INFO] [stdout] 108 |             SequenceModel::TRA => "TRA-VDJ".to_string(),
[INFO] [stdout]     |             ------------------ matches some of the same values
[INFO] [stdout] ...
[INFO] [stdout] 112 |             _ => unreachable!(),
[INFO] [stdout]     |             ^ ...and 3 other patterns collectively make this unreachable
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unreachable pattern
[INFO] [stdout]    --> src/VDJmodeler.rs:124:4
[INFO] [stdout]     |
[INFO] [stdout] 124 |             _ => unreachable!(),
[INFO] [stdout]     |             ^ no value can reach this
[INFO] [stdout]     |
[INFO] [stdout] note: multiple earlier patterns match some of the same values
[INFO] [stdout]    --> src/VDJmodeler.rs:124:4
[INFO] [stdout]     |
[INFO] [stdout] 118 |             SequenceModel::IGH | SequenceModel::TRB | SequenceModel::TRD => {
[INFO] [stdout]     |             ------------------------------------------------------------ matches some of the same values
[INFO] [stdout] ...
[INFO] [stdout] 121 |             SequenceModel::IGL | SequenceModel::IGK | SequenceModel::TRA | SequenceModel::TRG => {
[INFO] [stdout]     |             --------------------------------------------------------------------------------- matches some of the same values
[INFO] [stdout] ...
[INFO] [stdout] 124 |             _ => unreachable!(),
[INFO] [stdout]     |             ^ collectively making this unreachable
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/VDJmodeler.rs:289:22
[INFO] [stdout]     |
[INFO] [stdout] 289 |                     let mut hmm_model = HMMmodel::new(seq_mod.clone(), data.iter().sum());
[INFO] [stdout]     |                         ----^^^^^^^^^
[INFO] [stdout]     |                         |
[INFO] [stdout]     |                         help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: module `HMM` should have a snake case name
[INFO] [stdout]  --> src/lib.rs:1:9
[INFO] [stdout]   |
[INFO] [stdout] 1 | pub mod HMM;
[INFO] [stdout]   |         ^^^ help: convert the identifier to snake case: `hmm`
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: module `VDJmodeler` should have a snake case name
[INFO] [stdout]  --> src/lib.rs:3:9
[INFO] [stdout]   |
[INFO] [stdout] 3 | pub mod VDJmodeler;
[INFO] [stdout]   |         ^^^^^^^^^^ help: convert the identifier to snake case: `vdjmodeler`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused label
[INFO] [stdout]    --> src/HMM.rs:325:9
[INFO] [stdout]     |
[INFO] [stdout] 325 |         'main: for t in start+1..this_end {
[INFO] [stdout]     |         ^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_labels)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `other`
[INFO] [stdout]    --> src/HMM.rs:128:13
[INFO] [stdout]     |
[INFO] [stdout] 128 |             other => {
[INFO] [stdout]     |             ^^^^^ help: if this is intentional, prefix it with an underscore: `_other`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/HMM.rs:346:13
[INFO] [stdout]     |
[INFO] [stdout] 346 |         let mut result: Vec<(String, f64)> = self.names.iter()
[INFO] [stdout]     |             ----^^^^^^
[INFO] [stdout]     |             |
[INFO] [stdout]     |             help: remove this `mut`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_mut)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `total_prob`
[INFO] [stdout]    --> src/HMM.rs:343:13
[INFO] [stdout]     |
[INFO] [stdout] 343 |         let total_prob = (max_final_prob).exp() ;
[INFO] [stdout]     |             ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_total_prob`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unreachable pattern
[INFO] [stdout]   --> src/VDJmodeler.rs:37:6
[INFO] [stdout]    |
[INFO] [stdout] 37 |                     _ => unreachable!(),
[INFO] [stdout]    |                     ^ no value can reach this
[INFO] [stdout]    |
[INFO] [stdout] note: multiple earlier patterns match some of the same values
[INFO] [stdout]   --> src/VDJmodeler.rs:37:6
[INFO] [stdout]    |
[INFO] [stdout] 34 |                     Chain::V => 0,
[INFO] [stdout]    |                     -------- matches some of the same values
[INFO] [stdout] 35 |                     Chain::D => panic!("A light chain has no D segement!"),
[INFO] [stdout]    |                     -------- matches some of the same values
[INFO] [stdout] 36 |                     Chain::J => data[0],
[INFO] [stdout]    |                     -------- matches some of the same values
[INFO] [stdout] 37 |                     _ => unreachable!(),
[INFO] [stdout]    |                     ^ collectively making this unreachable
[INFO] [stdout]    = note: `#[warn(unreachable_patterns)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unreachable pattern
[INFO] [stdout]   --> src/VDJmodeler.rs:67:4
[INFO] [stdout]    |
[INFO] [stdout] 67 |             _ => unreachable!(),
[INFO] [stdout]    |             ^ no value can reach this
[INFO] [stdout]    |
[INFO] [stdout] note: multiple earlier patterns match some of the same values
[INFO] [stdout]   --> src/VDJmodeler.rs:67:4
[INFO] [stdout]    |
[INFO] [stdout] 60 |             SequenceModel::IGH => 0,
[INFO] [stdout]    |             ------------------ matches some of the same values
[INFO] [stdout] 61 |             SequenceModel::IGL => 1,
[INFO] [stdout]    |             ------------------ matches some of the same values
[INFO] [stdout] 62 |             SequenceModel::IGK => 2,
[INFO] [stdout]    |             ------------------ matches some of the same values
[INFO] [stdout] 63 |             SequenceModel::TRA => 3, 
[INFO] [stdout]    |             ------------------ matches some of the same values
[INFO] [stdout] ...
[INFO] [stdout] 67 |             _ => unreachable!(),
[INFO] [stdout]    |             ^ ...and 3 other patterns collectively make this unreachable
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unreachable pattern
[INFO] [stdout]   --> src/VDJmodeler.rs:99:13
[INFO] [stdout]    |
[INFO] [stdout] 99 |             _ => unreachable!(),
[INFO] [stdout]    |             ^ no value can reach this
[INFO] [stdout]    |
[INFO] [stdout] note: multiple earlier patterns match some of the same values
[INFO] [stdout]   --> src/VDJmodeler.rs:99:13
[INFO] [stdout]    |
[INFO] [stdout] 91 |             SequenceModel::IGH| SequenceModel::TRA | SequenceModel::TRG => {
[INFO] [stdout]    |             ----------------------------------------------------------- matches some of the same values
[INFO] [stdout] ...
[INFO] [stdout] 95 |             SequenceModel::IGL | SequenceModel::IGK | SequenceModel::TRB | SequenceModel::TRD => {
[INFO] [stdout]    |             --------------------------------------------------------------------------------- matches some of the same values
[INFO] [stdout] ...
[INFO] [stdout] 99 |             _ => unreachable!(),
[INFO] [stdout]    |             ^ collectively making this unreachable
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unreachable pattern
[INFO] [stdout]    --> src/VDJmodeler.rs:112:4
[INFO] [stdout]     |
[INFO] [stdout] 112 |             _ => unreachable!(),
[INFO] [stdout]     |             ^ no value can reach this
[INFO] [stdout]     |
[INFO] [stdout] note: multiple earlier patterns match some of the same values
[INFO] [stdout]    --> src/VDJmodeler.rs:112:4
[INFO] [stdout]     |
[INFO] [stdout] 105 |             SequenceModel::IGH => "IGH-VDJ".to_string(),
[INFO] [stdout]     |             ------------------ matches some of the same values
[INFO] [stdout] 106 |             SequenceModel::IGL => "IGL-VDJ".to_string(),
[INFO] [stdout]     |             ------------------ matches some of the same values
[INFO] [stdout] 107 |             SequenceModel::IGK => "IGK-VDJ".to_string(),
[INFO] [stdout]     |             ------------------ matches some of the same values
[INFO] [stdout] 108 |             SequenceModel::TRA => "TRA-VDJ".to_string(),
[INFO] [stdout]     |             ------------------ matches some of the same values
[INFO] [stdout] ...
[INFO] [stdout] 112 |             _ => unreachable!(),
[INFO] [stdout]     |             ^ ...and 3 other patterns collectively make this unreachable
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unreachable pattern
[INFO] [stdout]    --> src/VDJmodeler.rs:124:4
[INFO] [stdout]     |
[INFO] [stdout] 124 |             _ => unreachable!(),
[INFO] [stdout]     |             ^ no value can reach this
[INFO] [stdout]     |
[INFO] [stdout] note: multiple earlier patterns match some of the same values
[INFO] [stdout]    --> src/VDJmodeler.rs:124:4
[INFO] [stdout]     |
[INFO] [stdout] 118 |             SequenceModel::IGH | SequenceModel::TRB | SequenceModel::TRD => {
[INFO] [stdout]     |             ------------------------------------------------------------ matches some of the same values
[INFO] [stdout] ...
[INFO] [stdout] 121 |             SequenceModel::IGL | SequenceModel::IGK | SequenceModel::TRA | SequenceModel::TRG => {
[INFO] [stdout]     |             --------------------------------------------------------------------------------- matches some of the same values
[INFO] [stdout] ...
[INFO] [stdout] 124 |             _ => unreachable!(),
[INFO] [stdout]     |             ^ collectively making this unreachable
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/VDJmodeler.rs:289:22
[INFO] [stdout]     |
[INFO] [stdout] 289 |                     let mut hmm_model = HMMmodel::new(seq_mod.clone(), data.iter().sum());
[INFO] [stdout]     |                         ----^^^^^^^^^
[INFO] [stdout]     |                         |
[INFO] [stdout]     |                         help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: module `HMM` should have a snake case name
[INFO] [stdout]  --> src/lib.rs:1:9
[INFO] [stdout]   |
[INFO] [stdout] 1 | pub mod HMM;
[INFO] [stdout]   |         ^^^ help: convert the identifier to snake case: `hmm`
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: module `VDJmodeler` should have a snake case name
[INFO] [stdout]  --> src/lib.rs:3:9
[INFO] [stdout]   |
[INFO] [stdout] 3 | pub mod VDJmodeler;
[INFO] [stdout]   |         ^^^^^^^^^^ help: convert the identifier to snake case: `vdjmodeler`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `needletail::parser::SequenceRecord`
[INFO] [stdout]  --> src/main.rs:6:5
[INFO] [stdout]   |
[INFO] [stdout] 6 | use needletail::parser::SequenceRecord;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io::BufReader`
[INFO] [stdout]  --> src/main.rs:8:5
[INFO] [stdout]   |
[INFO] [stdout] 8 | use std::io::BufReader;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `needletail::parser::SequenceRecord`
[INFO] [stdout]  --> src/main.rs:6:5
[INFO] [stdout]   |
[INFO] [stdout] 6 | use needletail::parser::SequenceRecord;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io::BufReader`
[INFO] [stdout]  --> src/main.rs:8:5
[INFO] [stdout]   |
[INFO] [stdout] 8 | use std::io::BufReader;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `record_count` is assigned to, but never used
[INFO] [stdout]   --> src/main.rs:82:9
[INFO] [stdout]    |
[INFO] [stdout] 82 |     let mut record_count = 0;
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: consider using `_record_count` instead
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `record_count` is never read
[INFO] [stdout]   --> src/main.rs:88:17
[INFO] [stdout]    |
[INFO] [stdout] 88 |                 record_count += 1;
[INFO] [stdout]    |                 ^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = help: maybe it is overwritten before being read?
[INFO] [stdout]    = note: `#[warn(unused_assignments)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `record_count` is assigned to, but never used
[INFO] [stdout]   --> src/main.rs:82:9
[INFO] [stdout]    |
[INFO] [stdout] 82 |     let mut record_count = 0;
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: consider using `_record_count` instead
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `record_count` is never read
[INFO] [stdout]   --> src/main.rs:88:17
[INFO] [stdout]    |
[INFO] [stdout] 88 |                 record_count += 1;
[INFO] [stdout]    |                 ^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = help: maybe it is overwritten before being read?
[INFO] [stdout]    = note: `#[warn(unused_assignments)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 17.64s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: buf_redux v0.8.4
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] running `Command { std: "docker" "inspect" "37c6c374d318123f796c03f85c1d663ca511691bc9207428da4089ec4f10e2f6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "37c6c374d318123f796c03f85c1d663ca511691bc9207428da4089ec4f10e2f6", kill_on_drop: false }`
[INFO] [stdout] 37c6c374d318123f796c03f85c1d663ca511691bc9207428da4089ec4f10e2f6
