[INFO] cloning repository https://github.com/iarpa-felix/simsplice
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/iarpa-felix/simsplice" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fiarpa-felix%2Fsimsplice", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fiarpa-felix%2Fsimsplice'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 8c091af199126d4f3f807d1275c1dc167e0f9efe
[INFO] checking iarpa-felix/simsplice against try#4f260f0f20b3133d20cfb50353c0221943af5796+rustflags=-Dunmustuse_in_always_ok for pr-148577
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fiarpa-felix%2Fsimsplice" "/workspace/builds/worker-3-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-3-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/iarpa-felix/simsplice
[INFO] finished tweaking git repo https://github.com/iarpa-felix/simsplice
[INFO] tweaked toml for git repo https://github.com/iarpa-felix/simsplice written to /workspace/builds/worker-3-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/iarpa-felix/simsplice on toolchain 4f260f0f20b3133d20cfb50353c0221943af5796
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+4f260f0f20b3133d20cfb50353c0221943af5796" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/iarpa-felix/simsplice already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+4f260f0f20b3133d20cfb50353c0221943af5796" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+4f260f0f20b3133d20cfb50353c0221943af5796" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 3364eca0dc86a4c98085a0bfd78e1966edfe0f6199601a2de083114a57c71033
[INFO] running `Command { std: "docker" "start" "-a" "3364eca0dc86a4c98085a0bfd78e1966edfe0f6199601a2de083114a57c71033", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "3364eca0dc86a4c98085a0bfd78e1966edfe0f6199601a2de083114a57c71033", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3364eca0dc86a4c98085a0bfd78e1966edfe0f6199601a2de083114a57c71033", kill_on_drop: false }`
[INFO] [stdout] 3364eca0dc86a4c98085a0bfd78e1966edfe0f6199601a2de083114a57c71033
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid -Dunmustuse_in_always_ok" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+4f260f0f20b3133d20cfb50353c0221943af5796" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 876de11b48aa72c3960eb9f6529c60eb79cf2901a801c0940e805df2c5427b60
[INFO] running `Command { std: "docker" "start" "-a" "876de11b48aa72c3960eb9f6529c60eb79cf2901a801c0940e805df2c5427b60", kill_on_drop: false }`
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[INFO] [stderr]     Checking attohttpc v0.16.0
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[INFO] [stderr]     Checking simsplice v1.0.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `Regex`
[INFO] [stdout]  --> src/liftover.rs:5:13
[INFO] [stdout]   |
[INFO] [stdout] 5 | use regex::{Regex};
[INFO] [stdout]   |             ^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `slog::info`
[INFO] [stdout]  --> src/liftover.rs:9:5
[INFO] [stdout]   |
[INFO] [stdout] 9 | use slog::info;
[INFO] [stdout]   |     ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Regex`
[INFO] [stdout]  --> src/liftover.rs:5:13
[INFO] [stdout]   |
[INFO] [stdout] 5 | use regex::{Regex};
[INFO] [stdout]   |             ^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `slog::info`
[INFO] [stdout]  --> src/liftover.rs:9:5
[INFO] [stdout]   |
[INFO] [stdout] 9 | use slog::info;
[INFO] [stdout]   |     ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Regex`
[INFO] [stdout]  --> src/genvcf.rs:5:13
[INFO] [stdout]   |
[INFO] [stdout] 5 | use regex::{Regex, Captures};
[INFO] [stdout]   |             ^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Regex`
[INFO] [stdout]  --> src/genvcf.rs:5:13
[INFO] [stdout]   |
[INFO] [stdout] 5 | use regex::{Regex, Captures};
[INFO] [stdout]   |             ^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `warn`
[INFO] [stdout]   --> src/simsplice.rs:23:18
[INFO] [stdout]    |
[INFO] [stdout] 23 | use slog::{info, warn};
[INFO] [stdout]    |                  ^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `warn`
[INFO] [stdout]   --> src/simsplice.rs:23:18
[INFO] [stdout]    |
[INFO] [stdout] 23 | use slog::{info, warn};
[INFO] [stdout]    |                  ^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `log`
[INFO] [stdout]   --> src/liftover.rs:58:9
[INFO] [stdout]    |
[INFO] [stdout] 58 |     let log = slog::Logger::root(
[INFO] [stdout]    |         ^^^ help: if this is intentional, prefix it with an underscore: `_log`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `log`
[INFO] [stdout]   --> src/liftover.rs:58:9
[INFO] [stdout]    |
[INFO] [stdout] 58 |     let log = slog::Logger::root(
[INFO] [stdout]    |         ^^^ help: if this is intentional, prefix it with an underscore: `_log`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: this type will no longer be must used: Result<String, Infallible>
[INFO] [stdout]   --> src/liftover.rs:44:5
[INFO] [stdout]    |
[INFO] [stdout] 44 | /     #[structopt(help = "file input (in GFF/GTF format)", name="IN")]
[INFO] [stdout] 45 | |     input: String,
[INFO] [stdout]    | |_________________^
[INFO] [stdout]    |
[INFO] [stdout]    = note: requested on the command line with `-D unmustuse-in-always-ok`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: this type will no longer be must used: Result<String, Infallible>
[INFO] [stdout]   --> src/liftover.rs:44:5
[INFO] [stdout]    |
[INFO] [stdout] 44 | /     #[structopt(help = "file input (in GFF/GTF format)", name="IN")]
[INFO] [stdout] 45 | |     input: String,
[INFO] [stdout]    | |_________________^
[INFO] [stdout]    |
[INFO] [stdout]    = note: requested on the command line with `-D unmustuse-in-always-ok`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: this type will no longer be must used: Result<String, Infallible>
[INFO] [stdout]   --> src/liftover.rs:46:5
[INFO] [stdout]    |
[INFO] [stdout] 46 | /     #[structopt(help = "Liftover file of format: ", name="LIFTOVER")]
[INFO] [stdout] 47 | |     liftover: String,
[INFO] [stdout]    | |____________________^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: this type will no longer be must used: Result<String, Infallible>
[INFO] [stdout]   --> src/liftover.rs:48:5
[INFO] [stdout]    |
[INFO] [stdout] 48 | /     #[structopt(help = "Output file", name="OUT")]
[INFO] [stdout] 49 | |     out: String,
[INFO] [stdout]    | |_______________^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: this type will no longer be must used: Result<String, Infallible>
[INFO] [stdout]   --> src/liftover.rs:46:5
[INFO] [stdout]    |
[INFO] [stdout] 46 | /     #[structopt(help = "Liftover file of format: ", name="LIFTOVER")]
[INFO] [stdout] 47 | |     liftover: String,
[INFO] [stdout]    | |____________________^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: this type will no longer be must used: Result<String, Infallible>
[INFO] [stdout]   --> src/liftover.rs:48:5
[INFO] [stdout]    |
[INFO] [stdout] 48 | /     #[structopt(help = "Output file", name="OUT")]
[INFO] [stdout] 49 | |     out: String,
[INFO] [stdout]    | |_______________^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `simsplice` (bin "liftover") due to 3 previous errors; 3 warnings emitted
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: could not compile `simsplice` (bin "liftover" test) due to 3 previous errors; 3 warnings emitted
[INFO] [stdout] warning: unused variable: `result`
[INFO] [stdout]    --> src/genvcf.rs:199:17
[INFO] [stdout]     |
[INFO] [stdout] 199 |             let result = result?;
[INFO] [stdout]     |                 ^^^^^^ help: if this is intentional, prefix it with an underscore: `_result`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: this type will no longer be must used: Result<std::string::String, Infallible>
[INFO] [stdout]   --> src/genvcf.rs:55:5
[INFO] [stdout]    |
[INFO] [stdout] 55 | /     #[structopt(short="r", long="genome", help = "Input reference genome FASTA file", name="FASTAFILE")]
[INFO] [stdout] 56 | |     reference: String,
[INFO] [stdout]    | |_____________________^
[INFO] [stdout]    |
[INFO] [stdout]    = note: requested on the command line with `-D unmustuse-in-always-ok`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: this type will no longer be must used: Result<std::string::String, Infallible>
[INFO] [stdout]   --> src/genvcf.rs:57:5
[INFO] [stdout]    |
[INFO] [stdout] 57 | /     #[structopt(short="v", long="vcf", help = "Output VCF file with mutations", name="VCFFILE")]
[INFO] [stdout] 58 | |     vcffile: String,
[INFO] [stdout]    | |___________________^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: this type will no longer be must used: Result<std::string::String, Infallible>
[INFO] [stdout]   --> src/genvcf.rs:65:5
[INFO] [stdout]    |
[INFO] [stdout] 65 | /     #[structopt(short="D", long="delete-range", help = "Range in bp for deletions", name="DELETE_RANGE", default_value="10-100")]
[INFO] [stdout] 66 | |     delete_range: String,
[INFO] [stdout]    | |________________________^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: this type will no longer be must used: Result<std::string::String, Infallible>
[INFO] [stdout]   --> src/genvcf.rs:67:5
[INFO] [stdout]    |
[INFO] [stdout] 67 | /     #[structopt(short="I", long="insert-range", help = "Range in bp for insertions", name="INSERT_RANGE", default_value="10-100")]
[INFO] [stdout] 68 | |     insert_range: String,
[INFO] [stdout]    | |________________________^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: this type will no longer be must used: Result<std::string::String, Infallible>
[INFO] [stdout]   --> src/genvcf.rs:71:5
[INFO] [stdout]    |
[INFO] [stdout] 71 | /     #[structopt(short="m", long="modifications", help = "Specify modifications. A series of chromosome choordinate/ranges:lengths. Exampl...
[INFO] [stdout] 72 | |     modifications: Vec<String>,
[INFO] [stdout]    | |______________________________^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: this type will no longer be must used: Result<std::string::String, Infallible>
[INFO] [stdout]   --> src/genvcf.rs:73:5
[INFO] [stdout]    |
[INFO] [stdout] 73 | /     #[structopt(short="g", long="gff-include", help = "GFF file where any modifications must overlap one of its features to be included",...
[INFO] [stdout] 74 | |     gff_include: Vec<String>,
[INFO] [stdout]    | |____________________________^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: this type will no longer be must used: Result<std::string::String, Infallible>
[INFO] [stdout]   --> src/genvcf.rs:75:5
[INFO] [stdout]    |
[INFO] [stdout] 75 | /     #[structopt(short="G", long="gff-exclude", help = "GFF file where any modifications must *NOT* overlap one of its features to be incl...
[INFO] [stdout] 76 | |     gff_exclude: Vec<String>,
[INFO] [stdout]    | |____________________________^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: this type will no longer be must used: Result<std::string::String, Infallible>
[INFO] [stdout]   --> src/genvcf.rs:77:5
[INFO] [stdout]    |
[INFO] [stdout] 77 | /     #[structopt(short="b", long="bed-include", help = "BED file where any modifications must overlap one of its features to be included",...
[INFO] [stdout] 78 | |     bed_include: Vec<String>,
[INFO] [stdout]    | |____________________________^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: this type will no longer be must used: Result<std::string::String, Infallible>
[INFO] [stdout]   --> src/genvcf.rs:79:5
[INFO] [stdout]    |
[INFO] [stdout] 79 | /     #[structopt(short="B", long="bed-exclude", help = "BED file where any modifications must *NOT* overlap one of its features to be incl...
[INFO] [stdout] 80 | |     bed_exclude: Vec<String>,
[INFO] [stdout]    | |____________________________^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `simsplice` (bin "genvcf" test) due to 9 previous errors; 2 warnings emitted
[INFO] [stdout] warning: unused variable: `result`
[INFO] [stdout]    --> src/genvcf.rs:199:17
[INFO] [stdout]     |
[INFO] [stdout] 199 |             let result = result?;
[INFO] [stdout]     |                 ^^^^^^ help: if this is intentional, prefix it with an underscore: `_result`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: this type will no longer be must used: Result<std::string::String, Infallible>
[INFO] [stdout]   --> src/genvcf.rs:55:5
[INFO] [stdout]    |
[INFO] [stdout] 55 | /     #[structopt(short="r", long="genome", help = "Input reference genome FASTA file", name="FASTAFILE")]
[INFO] [stdout] 56 | |     reference: String,
[INFO] [stdout]    | |_____________________^
[INFO] [stdout]    |
[INFO] [stdout]    = note: requested on the command line with `-D unmustuse-in-always-ok`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: this type will no longer be must used: Result<std::string::String, Infallible>
[INFO] [stdout]   --> src/genvcf.rs:57:5
[INFO] [stdout]    |
[INFO] [stdout] 57 | /     #[structopt(short="v", long="vcf", help = "Output VCF file with mutations", name="VCFFILE")]
[INFO] [stdout] 58 | |     vcffile: String,
[INFO] [stdout]    | |___________________^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: this type will no longer be must used: Result<std::string::String, Infallible>
[INFO] [stdout]   --> src/genvcf.rs:65:5
[INFO] [stdout]    |
[INFO] [stdout] 65 | /     #[structopt(short="D", long="delete-range", help = "Range in bp for deletions", name="DELETE_RANGE", default_value="10-100")]
[INFO] [stdout] 66 | |     delete_range: String,
[INFO] [stdout]    | |________________________^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: this type will no longer be must used: Result<std::string::String, Infallible>
[INFO] [stdout]   --> src/genvcf.rs:67:5
[INFO] [stdout]    |
[INFO] [stdout] 67 | /     #[structopt(short="I", long="insert-range", help = "Range in bp for insertions", name="INSERT_RANGE", default_value="10-100")]
[INFO] [stdout] 68 | |     insert_range: String,
[INFO] [stdout]    | |________________________^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `origpos` is never read
[INFO] [stdout]    --> src/simsplice.rs:399:21
[INFO] [stdout]     |
[INFO] [stdout] 399 |                     origpos = splice.start;
[INFO] [stdout]     |                     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = help: maybe it is overwritten before being read?
[INFO] [stdout]     = note: `#[warn(unused_assignments)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: this type will no longer be must used: Result<std::string::String, Infallible>
[INFO] [stdout]   --> src/genvcf.rs:71:5
[INFO] [stdout]    |
[INFO] [stdout] 71 | /     #[structopt(short="m", long="modifications", help = "Specify modifications. A series of chromosome choordinate/ranges:lengths. Exampl...
[INFO] [stdout] 72 | |     modifications: Vec<String>,
[INFO] [stdout]    | |______________________________^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: this type will no longer be must used: Result<std::string::String, Infallible>
[INFO] [stdout]   --> src/genvcf.rs:73:5
[INFO] [stdout]    |
[INFO] [stdout] 73 | /     #[structopt(short="g", long="gff-include", help = "GFF file where any modifications must overlap one of its features to be included",...
[INFO] [stdout] 74 | |     gff_include: Vec<String>,
[INFO] [stdout]    | |____________________________^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: this type will no longer be must used: Result<std::string::String, Infallible>
[INFO] [stdout]   --> src/genvcf.rs:75:5
[INFO] [stdout]    |
[INFO] [stdout] 75 | /     #[structopt(short="G", long="gff-exclude", help = "GFF file where any modifications must *NOT* overlap one of its features to be incl...
[INFO] [stdout] 76 | |     gff_exclude: Vec<String>,
[INFO] [stdout]    | |____________________________^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: this type will no longer be must used: Result<std::string::String, Infallible>
[INFO] [stdout]   --> src/genvcf.rs:77:5
[INFO] [stdout]    |
[INFO] [stdout] 77 | /     #[structopt(short="b", long="bed-include", help = "BED file where any modifications must overlap one of its features to be included",...
[INFO] [stdout] 78 | |     bed_include: Vec<String>,
[INFO] [stdout]    | |____________________________^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: this type will no longer be must used: Result<std::string::String, Infallible>
[INFO] [stdout]   --> src/genvcf.rs:79:5
[INFO] [stdout]    |
[INFO] [stdout] 79 | /     #[structopt(short="B", long="bed-exclude", help = "BED file where any modifications must *NOT* overlap one of its features to be incl...
[INFO] [stdout] 80 | |     bed_exclude: Vec<String>,
[INFO] [stdout]    | |____________________________^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: this type will no longer be must used: Result<std::string::String, Infallible>
[INFO] [stdout]   --> src/simsplice.rs:73:5
[INFO] [stdout]    |
[INFO] [stdout] 73 | /     #[structopt(short="g", long="genome", help = "Input reference genome FASTA file", name="FASTAFILE")]
[INFO] [stdout] 74 | |     reference: String,
[INFO] [stdout]    | |_____________________^
[INFO] [stdout]    |
[INFO] [stdout]    = note: requested on the command line with `-D unmustuse-in-always-ok`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: this type will no longer be must used: Result<std::string::String, Infallible>
[INFO] [stdout]   --> src/simsplice.rs:75:5
[INFO] [stdout]    |
[INFO] [stdout] 75 | /     #[structopt(short="v", long="vcf", help = "Input VCF file with mutations", name="VCFFILE")]
[INFO] [stdout] 76 | |     vcffile: String,
[INFO] [stdout]    | |___________________^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: this type will no longer be must used: Result<std::string::String, Infallible>
[INFO] [stdout]   --> src/simsplice.rs:77:5
[INFO] [stdout]    |
[INFO] [stdout] 77 | /     #[structopt(short="b", long="collated-bam", help = "Input BAM file of reads, *INCLUDING* unaligned reads, collated using samtools col...
[INFO] [stdout] 78 | |     collated_bamfile: String,
[INFO] [stdout]    | |____________________________^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: this type will no longer be must used: Result<std::string::String, Infallible>
[INFO] [stdout]   --> src/simsplice.rs:79:5
[INFO] [stdout]    |
[INFO] [stdout] 79 | /     #[structopt(short="w", long="start-bigwig", help = "bigWig file of read start sites, e.g. min genomic position, NOT strand specific. ...
[INFO] [stdout] 80 | |     start_bigwig: String,
[INFO] [stdout]    | |________________________^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: this type will no longer be must used: Result<std::string::String, Infallible>
[INFO] [stdout]   --> src/simsplice.rs:81:5
[INFO] [stdout]    |
[INFO] [stdout] 81 | /     #[structopt(short="o", long = "outgenome", help = "Output modified reference FASTA file", name="OUTFASTAFILE")]
[INFO] [stdout] 82 | |     outfastafile: String,
[INFO] [stdout]    | |________________________^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: this type will no longer be must used: Result<std::string::String, Infallible>
[INFO] [stdout]   --> src/simsplice.rs:83:5
[INFO] [stdout]    |
[INFO] [stdout] 83 | /     #[structopt(short="r", long = "outreads", help = "Output modified FASTQ reads file", name="OUTFASTQFILE")]
[INFO] [stdout] 84 | |     outfastqfile: String,
[INFO] [stdout]    | |________________________^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: this type will no longer be must used: Result<std::string::String, Infallible>
[INFO] [stdout]   --> src/simsplice.rs:85:5
[INFO] [stdout]    |
[INFO] [stdout] 85 | /     #[structopt(short="R", long = "outreads2", help = "Output modified FASTQ reads file 2, for paired-end reads", name="OUTFASTQFILE2", d...
[INFO] [stdout] 86 | |     outfastqfile2: String,
[INFO] [stdout]    | |_________________________^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `origpos` is never read
[INFO] [stdout]    --> src/simsplice.rs:399:21
[INFO] [stdout]     |
[INFO] [stdout] 399 |                     origpos = splice.start;
[INFO] [stdout]     |                     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = help: maybe it is overwritten before being read?
[INFO] [stdout]     = note: `#[warn(unused_assignments)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: this type will no longer be must used: Result<std::string::String, Infallible>
[INFO] [stdout]   --> src/simsplice.rs:73:5
[INFO] [stdout]    |
[INFO] [stdout] 73 | /     #[structopt(short="g", long="genome", help = "Input reference genome FASTA file", name="FASTAFILE")]
[INFO] [stdout] 74 | |     reference: String,
[INFO] [stdout]    | |_____________________^
[INFO] [stdout]    |
[INFO] [stdout]    = note: requested on the command line with `-D unmustuse-in-always-ok`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: this type will no longer be must used: Result<std::string::String, Infallible>
[INFO] [stdout]   --> src/simsplice.rs:75:5
[INFO] [stdout]    |
[INFO] [stdout] 75 | /     #[structopt(short="v", long="vcf", help = "Input VCF file with mutations", name="VCFFILE")]
[INFO] [stdout] 76 | |     vcffile: String,
[INFO] [stdout]    | |___________________^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: this type will no longer be must used: Result<std::string::String, Infallible>
[INFO] [stdout]   --> src/simsplice.rs:77:5
[INFO] [stdout]    |
[INFO] [stdout] 77 | /     #[structopt(short="b", long="collated-bam", help = "Input BAM file of reads, *INCLUDING* unaligned reads, collated using samtools col...
[INFO] [stdout] 78 | |     collated_bamfile: String,
[INFO] [stdout]    | |____________________________^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: this type will no longer be must used: Result<std::string::String, Infallible>
[INFO] [stdout]   --> src/simsplice.rs:79:5
[INFO] [stdout]    |
[INFO] [stdout] 79 | /     #[structopt(short="w", long="start-bigwig", help = "bigWig file of read start sites, e.g. min genomic position, NOT strand specific. ...
[INFO] [stdout] 80 | |     start_bigwig: String,
[INFO] [stdout]    | |________________________^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: this type will no longer be must used: Result<std::string::String, Infallible>
[INFO] [stdout]   --> src/simsplice.rs:81:5
[INFO] [stdout]    |
[INFO] [stdout] 81 | /     #[structopt(short="o", long = "outgenome", help = "Output modified reference FASTA file", name="OUTFASTAFILE")]
[INFO] [stdout] 82 | |     outfastafile: String,
[INFO] [stdout]    | |________________________^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: this type will no longer be must used: Result<std::string::String, Infallible>
[INFO] [stdout]   --> src/simsplice.rs:83:5
[INFO] [stdout]    |
[INFO] [stdout] 83 | /     #[structopt(short="r", long = "outreads", help = "Output modified FASTQ reads file", name="OUTFASTQFILE")]
[INFO] [stdout] 84 | |     outfastqfile: String,
[INFO] [stdout]    | |________________________^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: this type will no longer be must used: Result<std::string::String, Infallible>
[INFO] [stdout]   --> src/simsplice.rs:85:5
[INFO] [stdout]    |
[INFO] [stdout] 85 | /     #[structopt(short="R", long = "outreads2", help = "Output modified FASTQ reads file 2, for paired-end reads", name="OUTFASTQFILE2", d...
[INFO] [stdout] 86 | |     outfastqfile2: String,
[INFO] [stdout]    | |_________________________^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `simsplice` (bin "genvcf") due to 9 previous errors; 2 warnings emitted
[INFO] [stderr] error: could not compile `simsplice` (bin "simsplice") due to 7 previous errors; 2 warnings emitted
[INFO] [stderr] error: could not compile `simsplice` (bin "simsplice" test) due to 7 previous errors; 2 warnings emitted
[INFO] running `Command { std: "docker" "inspect" "876de11b48aa72c3960eb9f6529c60eb79cf2901a801c0940e805df2c5427b60", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "876de11b48aa72c3960eb9f6529c60eb79cf2901a801c0940e805df2c5427b60", kill_on_drop: false }`
[INFO] [stdout] 876de11b48aa72c3960eb9f6529c60eb79cf2901a801c0940e805df2c5427b60
