[INFO] cloning repository https://github.com/iarpa-felix/simsplice
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/iarpa-felix/simsplice" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fiarpa-felix%2Fsimsplice", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fiarpa-felix%2Fsimsplice'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 8c091af199126d4f3f807d1275c1dc167e0f9efe
[INFO] checking iarpa-felix/simsplice against master#642c19bfc3a5c1de985bf5d0cc8207ac9d22708a for pr-148577
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fiarpa-felix%2Fsimsplice" "/workspace/builds/worker-3-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-3-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/iarpa-felix/simsplice
[INFO] finished tweaking git repo https://github.com/iarpa-felix/simsplice
[INFO] tweaked toml for git repo https://github.com/iarpa-felix/simsplice written to /workspace/builds/worker-3-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/iarpa-felix/simsplice on toolchain 642c19bfc3a5c1de985bf5d0cc8207ac9d22708a
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+642c19bfc3a5c1de985bf5d0cc8207ac9d22708a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/iarpa-felix/simsplice already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+642c19bfc3a5c1de985bf5d0cc8207ac9d22708a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+642c19bfc3a5c1de985bf5d0cc8207ac9d22708a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 03e8f38bb7d4bde9da3f60eadc8e592ef223de84801efc4a0acd177138a74b15
[INFO] running `Command { std: "docker" "start" "-a" "03e8f38bb7d4bde9da3f60eadc8e592ef223de84801efc4a0acd177138a74b15", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "03e8f38bb7d4bde9da3f60eadc8e592ef223de84801efc4a0acd177138a74b15", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "03e8f38bb7d4bde9da3f60eadc8e592ef223de84801efc4a0acd177138a74b15", kill_on_drop: false }`
[INFO] [stdout] 03e8f38bb7d4bde9da3f60eadc8e592ef223de84801efc4a0acd177138a74b15
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+642c19bfc3a5c1de985bf5d0cc8207ac9d22708a" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 3146d3d107ba46e4e4b4b141678741694b8b10a18461e5a6bd0ac87acb6742cc
[INFO] running `Command { std: "docker" "start" "-a" "3146d3d107ba46e4e4b4b141678741694b8b10a18461e5a6bd0ac87acb6742cc", kill_on_drop: false }`
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[INFO] [stderr]     Checking triple_accel v0.3.4
[INFO] [stderr]     Checking duct v0.13.4
[INFO] [stderr]     Checking slog-term v2.6.0
[INFO] [stderr]     Checking color-eyre v0.5.8
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[INFO] [stderr]     Checking linked-hash-map v0.5.3
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[INFO] [stderr]     Checking clap v3.0.0-beta.2
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[INFO] [stderr]     Checking bincode v1.3.1
[INFO] [stderr]     Checking multimap v0.8.2
[INFO] [stderr]     Checking csv v1.1.4
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[INFO] [stderr]     Checking attohttpc v0.16.0
[INFO] [stderr]     Checking bigtools v0.1.4
[INFO] [stderr]     Checking rust-htslib v0.35.2
[INFO] [stderr]     Checking simsplice v1.0.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `Regex`
[INFO] [stdout]  --> src/liftover.rs:5:13
[INFO] [stdout]   |
[INFO] [stdout] 5 | use regex::{Regex};
[INFO] [stdout]   |             ^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `slog::info`
[INFO] [stdout]  --> src/liftover.rs:9:5
[INFO] [stdout]   |
[INFO] [stdout] 9 | use slog::info;
[INFO] [stdout]   |     ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Regex`
[INFO] [stdout]  --> src/liftover.rs:5:13
[INFO] [stdout]   |
[INFO] [stdout] 5 | use regex::{Regex};
[INFO] [stdout]   |             ^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `slog::info`
[INFO] [stdout]  --> src/liftover.rs:9:5
[INFO] [stdout]   |
[INFO] [stdout] 9 | use slog::info;
[INFO] [stdout]   |     ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Regex`
[INFO] [stdout]  --> src/genvcf.rs:5:13
[INFO] [stdout]   |
[INFO] [stdout] 5 | use regex::{Regex, Captures};
[INFO] [stdout]   |             ^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Regex`
[INFO] [stdout]  --> src/genvcf.rs:5:13
[INFO] [stdout]   |
[INFO] [stdout] 5 | use regex::{Regex, Captures};
[INFO] [stdout]   |             ^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `warn`
[INFO] [stdout]   --> src/simsplice.rs:23:18
[INFO] [stdout]    |
[INFO] [stdout] 23 | use slog::{info, warn};
[INFO] [stdout]    |                  ^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `warn`
[INFO] [stdout]   --> src/simsplice.rs:23:18
[INFO] [stdout]    |
[INFO] [stdout] 23 | use slog::{info, warn};
[INFO] [stdout]    |                  ^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `log`
[INFO] [stdout]   --> src/liftover.rs:58:9
[INFO] [stdout]    |
[INFO] [stdout] 58 |     let log = slog::Logger::root(
[INFO] [stdout]    |         ^^^ help: if this is intentional, prefix it with an underscore: `_log`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `log`
[INFO] [stdout]   --> src/liftover.rs:58:9
[INFO] [stdout]    |
[INFO] [stdout] 58 |     let log = slog::Logger::root(
[INFO] [stdout]    |         ^^^ help: if this is intentional, prefix it with an underscore: `_log`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `result`
[INFO] [stdout]    --> src/genvcf.rs:199:17
[INFO] [stdout]     |
[INFO] [stdout] 199 |             let result = result?;
[INFO] [stdout]     |                 ^^^^^^ help: if this is intentional, prefix it with an underscore: `_result`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `origpos` is never read
[INFO] [stdout]    --> src/simsplice.rs:399:21
[INFO] [stdout]     |
[INFO] [stdout] 399 |                     origpos = splice.start;
[INFO] [stdout]     |                     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = help: maybe it is overwritten before being read?
[INFO] [stdout]     = note: `#[warn(unused_assignments)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `result`
[INFO] [stdout]    --> src/genvcf.rs:199:17
[INFO] [stdout]     |
[INFO] [stdout] 199 |             let result = result?;
[INFO] [stdout]     |                 ^^^^^^ help: if this is intentional, prefix it with an underscore: `_result`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `origpos` is never read
[INFO] [stdout]    --> src/simsplice.rs:399:21
[INFO] [stdout]     |
[INFO] [stdout] 399 |                     origpos = splice.start;
[INFO] [stdout]     |                     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = help: maybe it is overwritten before being read?
[INFO] [stdout]     = note: `#[warn(unused_assignments)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [optimized + debuginfo] target(s) in 4m 04s
[INFO] running `Command { std: "docker" "inspect" "3146d3d107ba46e4e4b4b141678741694b8b10a18461e5a6bd0ac87acb6742cc", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3146d3d107ba46e4e4b4b141678741694b8b10a18461e5a6bd0ac87acb6742cc", kill_on_drop: false }`
[INFO] [stdout] 3146d3d107ba46e4e4b4b141678741694b8b10a18461e5a6bd0ac87acb6742cc
