[INFO] cloning repository https://github.com/brassardfelix-ASTAR/MisMatchFinder_revised
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/brassardfelix-ASTAR/MisMatchFinder_revised" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbrassardfelix-ASTAR%2FMisMatchFinder_revised", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbrassardfelix-ASTAR%2FMisMatchFinder_revised'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 6447066f25651b3b9c7f3ada94560d6e794306f2
[INFO] checking brassardfelix-ASTAR/MisMatchFinder_revised against master#642c19bfc3a5c1de985bf5d0cc8207ac9d22708a for pr-148577
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbrassardfelix-ASTAR%2FMisMatchFinder_revised" "/workspace/builds/worker-0-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc1/source'...
[INFO] [stderr] done.
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[INFO] removed /workspace/builds/worker-0-tc1/source/rust-toolchain.toml
[INFO] started tweaking git repo https://github.com/brassardfelix-ASTAR/MisMatchFinder_revised
[INFO] finished tweaking git repo https://github.com/brassardfelix-ASTAR/MisMatchFinder_revised
[INFO] tweaked toml for git repo https://github.com/brassardfelix-ASTAR/MisMatchFinder_revised written to /workspace/builds/worker-0-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/brassardfelix-ASTAR/MisMatchFinder_revised on toolchain 642c19bfc3a5c1de985bf5d0cc8207ac9d22708a
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+642c19bfc3a5c1de985bf5d0cc8207ac9d22708a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/brassardfelix-ASTAR/MisMatchFinder_revised already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+642c19bfc3a5c1de985bf5d0cc8207ac9d22708a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Updating git repository `https://github.com/brentp/echtvar`
[INFO] [stderr]     Updating git repository `https://github.com/sci-rs/zarr`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded simple_logger v2.3.0
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded c2rust-bitfields v0.3.0
[INFO] [stderr]   Downloaded lz4 v1.23.3
[INFO] [stderr]   Downloaded enum-map-derive v0.6.0
[INFO] [stderr]   Downloaded pest_generator v2.2.1
[INFO] [stderr]   Downloaded c2rust-bitfields-derive v0.2.1
[INFO] [stderr]   Downloaded bgzip v0.2.1
[INFO] [stderr]   Downloaded enum-map v1.1.1
[INFO] [stderr]   Downloaded pest_derive v2.2.1
[INFO] [stderr]   Downloaded clap_derive v3.2.15
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded pest_meta v2.2.1
[INFO] [stderr]   Downloaded rust-lapper v1.0.1
[INFO] [stderr]   Downloaded simba v0.5.1
[INFO] [stderr]   Downloaded num-complex v0.4.2
[INFO] [stderr]   Downloaded anyhow v1.0.60
[INFO] [stderr]   Downloaded stream-vbyte v0.4.0
[INFO] [stderr]   Downloaded zip v0.6.2
[INFO] [stderr]   Downloaded bio-types v0.13.0
[INFO] [stderr]   Downloaded rust-htslib v0.39.5
[INFO] [stderr]   Downloaded libm v0.2.3
[INFO] [stderr]   Downloaded statrs v0.15.0
[INFO] [stderr]   Downloaded libdeflate-sys v0.5.0
[INFO] [stderr]   Downloaded bio v0.41.0
[INFO] [stderr]   Downloaded rust-htslib v0.38.2
[INFO] [stderr]   Downloaded clap v2.27.1
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[INFO] [stderr]   Downloaded fasteval v0.2.4
[INFO] [stderr]   Downloaded lz4-sys v1.9.3
[INFO] [stderr]   Downloaded nalgebra v0.27.1
[INFO] [stderr]   Downloaded lzma-sys v0.1.19
[INFO] [stderr]   Downloaded curl-sys v0.4.56+curl-7.83.1
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[INFO] [stderr]   Downloaded openssl-src v111.22.0+1.1.1q
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+642c19bfc3a5c1de985bf5d0cc8207ac9d22708a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] c0b5aa9fb722c0ed957c23ee7d249cbbfbd5b85b349a073cdc7e36c4e1f865e2
[INFO] running `Command { std: "docker" "start" "-a" "c0b5aa9fb722c0ed957c23ee7d249cbbfbd5b85b349a073cdc7e36c4e1f865e2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "c0b5aa9fb722c0ed957c23ee7d249cbbfbd5b85b349a073cdc7e36c4e1f865e2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c0b5aa9fb722c0ed957c23ee7d249cbbfbd5b85b349a073cdc7e36c4e1f865e2", kill_on_drop: false }`
[INFO] [stdout] c0b5aa9fb722c0ed957c23ee7d249cbbfbd5b85b349a073cdc7e36c4e1f865e2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+642c19bfc3a5c1de985bf5d0cc8207ac9d22708a" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 6fbbbdd3eb6e32a491d6e0be666d387ae685478397e2a687e4f7c0845d3df6a3
[INFO] running `Command { std: "docker" "start" "-a" "6fbbbdd3eb6e32a491d6e0be666d387ae685478397e2a687e4f7c0845d3df6a3", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.42
[INFO] [stderr]    Compiling unicode-ident v1.0.2
[INFO] [stderr]    Compiling quote v1.0.20
[INFO] [stderr]    Compiling syn v1.0.98
[INFO] [stderr]    Compiling libm v0.2.3
[INFO] [stderr]    Compiling rustversion v1.0.8
[INFO] [stderr]    Compiling num-traits v0.2.15
[INFO] [stderr]    Compiling num-integer v0.1.45
[INFO] [stderr]    Compiling heck v0.4.0
[INFO] [stderr]     Checking getrandom v0.2.7
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]    Compiling cmake v0.1.48
[INFO] [stderr]    Compiling openssl-src v111.22.0+1.1.1q
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.19
[INFO] [stderr]    Compiling libdeflate-sys v0.5.0
[INFO] [stderr]    Compiling curl-sys v0.4.56+curl-7.83.1
[INFO] [stderr]     Checking rand_core v0.6.3
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling ucd-trie v0.1.4
[INFO] [stderr]    Compiling glob v0.3.0
[INFO] [stderr]     Checking regex v1.6.0
[INFO] [stderr]     Checking miniz_oxide v0.5.3
[INFO] [stderr]    Compiling openssl-sys v0.9.75
[INFO] [stderr]    Compiling libz-sys v1.1.8
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]    Compiling once_cell v1.13.0
[INFO] [stderr]    Compiling lz4-sys v1.9.3
[INFO] [stderr]     Checking either v1.7.0
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]    Compiling paste v1.0.8
[INFO] [stderr]    Compiling ndarray v0.13.1
[INFO] [stderr]     Checking indexmap v1.9.1
[INFO] [stderr]     Checking url v2.2.2
[INFO] [stderr]    Compiling hts-sys v2.0.2
[INFO] [stderr]     Checking matrixmultiply v0.3.2
[INFO] [stderr]     Checking matrixmultiply v0.2.4
[INFO] [stderr]    Compiling unicode-segmentation v1.9.0
[INFO] [stderr]    Compiling anyhow v1.0.60
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking textwrap v0.9.0
[INFO] [stderr]     Checking csv-core v0.1.10
[INFO] [stderr]     Checking bitflags v0.9.1
[INFO] [stderr]     Checking num_threads v0.1.6
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking num-complex v0.4.2
[INFO] [stderr]     Checking ansi_term v0.9.0
[INFO] [stderr]     Checking os_str_bytes v6.2.0
[INFO] [stderr]     Checking petgraph v0.6.2
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking time v0.3.13
[INFO] [stderr]     Checking ordered-float v1.1.1
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]    Compiling heck v0.3.3
[INFO] [stderr]     Checking itertools v0.10.3
[INFO] [stderr]     Checking itertools v0.8.2
[INFO] [stderr]     Checking num-rational v0.4.1
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[INFO] [stderr]     Checking clap_lex v0.2.4
[INFO] [stderr]     Checking bytecount v0.6.3
[INFO] [stderr]     Checking termcolor v1.1.3
[INFO] [stderr]     Checking strum v0.23.0
[INFO] [stderr]     Checking stream-vbyte v0.4.0
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]     Checking fasteval v0.2.4
[INFO] [stderr]     Checking textwrap v0.15.0
[INFO] [stderr]     Checking simba v0.5.1
[INFO] [stderr]     Checking simple_logger v2.3.0
[INFO] [stderr]     Checking bzip2 v0.4.3
[INFO] [stderr]     Checking xz2 v0.1.7
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling serde_derive v1.0.143
[INFO] [stderr]    Compiling thiserror-impl v1.0.31
[INFO] [stderr]    Compiling strum_macros v0.24.2
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling c2rust-bitfields-derive v0.2.1
[INFO] [stderr]    Compiling enum-map-derive v0.6.0
[INFO] [stderr]    Compiling getset v0.1.2
[INFO] [stderr]    Compiling strum_macros v0.23.1
[INFO] [stderr]    Compiling clap_derive v3.2.15
[INFO] [stderr]     Checking nalgebra v0.27.1
[INFO] [stderr]     Checking enum-map v1.1.1
[INFO] [stderr]     Checking c2rust-bitfields v0.3.0
[INFO] [stderr]     Checking thiserror v1.0.31
[INFO] [stderr]     Checking pest v2.2.1
[INFO] [stderr]     Checking bio-types v0.13.0
[INFO] [stderr]    Compiling pest_meta v2.2.1
[INFO] [stderr]     Checking serde v1.0.143
[INFO] [stderr]    Compiling pest_generator v2.2.1
[INFO] [stderr]     Checking clap v3.2.15
[INFO] [stderr]    Compiling pest_derive v2.2.1
[INFO] [stderr]     Checking flate2 v1.0.24
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking serde_json v1.0.83
[INFO] [stderr]     Checking bstr v0.2.17
[INFO] [stderr]     Checking half v1.8.2
[INFO] [stderr]     Checking smallvec v1.9.0
[INFO] [stderr]     Checking bincode v1.3.3
[INFO] [stderr]     Checking multimap v0.8.3
[INFO] [stderr]     Checking clap v2.27.1
[INFO] [stderr]     Checking lz4 v1.23.3
[INFO] [stderr]     Checking json5 v0.4.1
[INFO] [stderr]     Checking bv v0.11.1
[INFO] [stderr]     Checking rust-lapper v1.0.1
[INFO] [stderr]     Checking zip v0.6.2
[INFO] [stderr]     Checking csv v1.1.6
[INFO] [stderr]     Checking bgzip v0.2.1
[INFO] [stderr]     Checking zarr v0.0.1 (https://github.com/sci-rs/zarr#32f69523)
[INFO] [stderr]     Checking statrs v0.15.0
[INFO] [stderr]     Checking bio v0.41.0
[INFO] [stderr]     Checking rust-htslib v0.38.2
[INFO] [stderr]     Checking rust-htslib v0.39.5
[INFO] [stderr]     Checking echtvar v0.1.7 (https://github.com/brentp/echtvar#87ea9deb)
[INFO] [stderr]     Checking mismatchfinder v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 06s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nalgebra v0.27.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 9`
[INFO] running `Command { std: "docker" "inspect" "6fbbbdd3eb6e32a491d6e0be666d387ae685478397e2a687e4f7c0845d3df6a3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6fbbbdd3eb6e32a491d6e0be666d387ae685478397e2a687e4f7c0845d3df6a3", kill_on_drop: false }`
[INFO] [stdout] 6fbbbdd3eb6e32a491d6e0be666d387ae685478397e2a687e4f7c0845d3df6a3
