[INFO] cloning repository https://github.com/lorewar2/bio_exp [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/lorewar2/bio_exp" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Florewar2%2Fbio_exp", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Florewar2%2Fbio_exp'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 48bbb4f81b7c08244bcde288ad821f45a4cd1287 [INFO] checking lorewar2/bio_exp against master#90b65889799733f21ebdf59d96411aa531c5900a for pr-148477 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Florewar2%2Fbio_exp" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc1/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/lorewar2/bio_exp [INFO] finished tweaking git repo https://github.com/lorewar2/bio_exp [INFO] tweaked toml for git repo https://github.com/lorewar2/bio_exp written to /workspace/builds/worker-2-tc1/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/lorewar2/bio_exp on toolchain 90b65889799733f21ebdf59d96411aa531c5900a [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+90b65889799733f21ebdf59d96411aa531c5900a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/lorewar2/bio_exp already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+90b65889799733f21ebdf59d96411aa531c5900a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating crates.io index [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Locking 180 packages to latest compatible versions [INFO] [stderr] Adding aho-corasick v1.1.4 [INFO] [stderr] Adding anyhow v1.0.100 [INFO] [stderr] Adding approx v0.5.1 [INFO] [stderr] Adding autocfg v1.5.0 [INFO] [stderr] Adding bindgen v0.69.5 [INFO] [stderr] Adding bio v3.0.0 [INFO] [stderr] Adding bio-types v1.0.4 [INFO] [stderr] Adding bit-set v0.8.0 [INFO] [stderr] Adding bit-vec v0.8.0 [INFO] [stderr] Adding bitflags v2.10.0 [INFO] [stderr] Adding bv v0.11.1 [INFO] [stderr] Adding bytecount v0.6.9 [INFO] [stderr] Adding bytemuck v1.24.0 [INFO] [stderr] Adding byteorder v1.5.0 [INFO] [stderr] Adding bzip2-sys v0.1.13+1.0.8 [INFO] [stderr] Adding cc v1.2.45 [INFO] [stderr] Adding cexpr v0.6.0 [INFO] [stderr] Adding cfg-if v1.0.4 [INFO] [stderr] Adding clang-sys v1.8.1 [INFO] [stderr] Adding cmake v0.1.54 [INFO] [stderr] Adding csv v1.4.0 [INFO] [stderr] Adding csv-core v0.1.13 [INFO] [stderr] Adding curl-sys v0.4.84+curl-8.17.0 [INFO] [stderr] Adding custom_derive v0.1.7 [INFO] [stderr] Adding derefable v0.1.0 [INFO] [stderr] Adding derive-new v0.6.0 [INFO] [stderr] Adding derive-new v0.7.0 [INFO] [stderr] Adding displaydoc v0.2.5 [INFO] [stderr] Adding editdistancek v1.0.2 [INFO] [stderr] Adding either v1.15.0 [INFO] [stderr] Adding enum-map v2.7.3 [INFO] [stderr] Adding enum-map-derive v0.17.0 [INFO] [stderr] Adding equivalent v1.0.2 [INFO] [stderr] Adding feature-probe v0.1.1 [INFO] [stderr] Adding find-msvc-tools v0.1.4 [INFO] [stderr] Adding fixedbitset v0.4.2 [INFO] [stderr] Adding fixedbitset v0.5.7 [INFO] [stderr] Adding foldhash v0.1.5 [INFO] [stderr] Adding form_urlencoded v1.2.2 [INFO] [stderr] Adding fs-utils v1.1.4 [INFO] [stderr] Adding fxhash v0.2.1 [INFO] [stderr] Adding getrandom v0.2.16 [INFO] [stderr] Adding getrandom v0.3.4 [INFO] [stderr] Adding getset v0.1.6 [INFO] [stderr] Adding glob v0.3.3 [INFO] [stderr] Adding hashbrown v0.15.5 [INFO] [stderr] Adding hashbrown v0.16.0 [INFO] [stderr] Adding heck v0.5.0 [INFO] [stderr] Adding hts-sys v2.2.0 [INFO] [stderr] Adding icu_collections v2.1.1 [INFO] [stderr] Adding icu_locale_core v2.1.1 [INFO] [stderr] Adding icu_normalizer v2.1.1 [INFO] [stderr] Adding icu_normalizer_data v2.1.1 [INFO] [stderr] Adding icu_properties v2.1.1 [INFO] [stderr] Adding icu_properties_data v2.1.1 [INFO] [stderr] Adding icu_provider v2.1.1 [INFO] [stderr] Adding idna v1.1.0 [INFO] [stderr] Adding idna_adapter v1.2.1 [INFO] [stderr] Adding ieee754 v0.2.6 [INFO] [stderr] Adding indexmap v2.12.0 [INFO] [stderr] Adding itertools v0.12.1 [INFO] [stderr] Adding itertools v0.14.0 [INFO] [stderr] Adding itertools-num v0.1.3 [INFO] [stderr] Adding itoa v1.0.15 [INFO] [stderr] Adding jobserver v0.1.34 [INFO] [stderr] Adding lazy_static v1.5.0 [INFO] [stderr] Adding lazycell v1.3.0 [INFO] [stderr] Adding libc v0.2.177 [INFO] [stderr] Adding libloading v0.8.9 [INFO] [stderr] Adding libm v0.1.4 (available: v0.2.15) [INFO] [stderr] Adding libm v0.2.15 [INFO] [stderr] Adding libz-sys v1.1.22 [INFO] [stderr] Adding linear-map v1.2.0 [INFO] [stderr] Adding litemap v0.8.1 [INFO] [stderr] Adding logaddexp v0.1.3 [INFO] [stderr] Adding lzma-sys v0.1.20 [INFO] [stderr] Adding matrixmultiply v0.3.10 [INFO] [stderr] Adding memchr v2.7.6 [INFO] [stderr] Adding minimal-lexical v0.2.1 [INFO] [stderr] Adding multimap v0.10.1 [INFO] [stderr] Adding nalgebra v0.29.0 [INFO] [stderr] Adding nalgebra v0.33.2 [INFO] [stderr] Adding nalgebra-macros v0.1.0 [INFO] [stderr] Adding ndarray v0.16.1 [INFO] [stderr] Adding newtype_derive v0.1.6 [INFO] [stderr] Adding nom v7.1.3 [INFO] [stderr] Adding num-bigint v0.4.6 [INFO] [stderr] Adding num-complex v0.4.6 [INFO] [stderr] Adding num-integer v0.1.46 [INFO] [stderr] Adding num-rational v0.4.2 [INFO] [stderr] Adding num-traits v0.2.19 [INFO] [stderr] Adding openssl-src v300.5.4+3.5.4 [INFO] [stderr] Adding openssl-sys v0.9.110 [INFO] [stderr] Adding ordered-float v5.1.0 [INFO] [stderr] Adding paste v1.0.15 [INFO] [stderr] Adding percent-encoding v2.3.2 [INFO] [stderr] Adding petgraph v0.6.5 (available: v0.8.3) [INFO] [stderr] Adding petgraph v0.8.3 [INFO] [stderr] Adding pkg-config v0.3.32 [INFO] [stderr] Adding portable-atomic v1.11.1 [INFO] [stderr] Adding portable-atomic-util v0.2.4 [INFO] [stderr] Adding potential_utf v0.1.4 [INFO] [stderr] Adding ppv-lite86 v0.2.21 [INFO] [stderr] Adding proc-macro-error-attr2 v2.0.0 [INFO] [stderr] Adding proc-macro-error2 v2.0.1 [INFO] [stderr] Adding proc-macro2 v0.4.30 [INFO] [stderr] Adding proc-macro2 v1.0.103 [INFO] [stderr] Adding quick-error v1.2.3 [INFO] [stderr] Adding quote v0.6.13 [INFO] [stderr] Adding quote v1.0.42 [INFO] [stderr] Adding r-efi v5.3.0 [INFO] [stderr] Adding rand v0.8.5 (available: v0.9.2) [INFO] [stderr] Adding rand_chacha v0.3.1 [INFO] [stderr] Adding rand_core v0.6.4 [INFO] [stderr] Adding rand_distr v0.4.3 [INFO] [stderr] Adding rawpointer v0.2.1 [INFO] [stderr] Adding regex v1.12.2 [INFO] [stderr] Adding regex-automata v0.4.13 [INFO] [stderr] Adding regex-syntax v0.8.8 [INFO] [stderr] Adding rust-htslib v0.51.0 [INFO] [stderr] Adding rustc-hash v1.1.0 [INFO] [stderr] Adding rustc_version v0.1.7 [INFO] [stderr] Adding rustversion v1.0.22 [INFO] [stderr] Adding ryu v1.0.20 [INFO] [stderr] Adding safe_arch v0.7.4 [INFO] [stderr] Adding semver v0.1.20 [INFO] [stderr] Adding serde v1.0.228 [INFO] [stderr] Adding serde_core v1.0.228 [INFO] [stderr] Adding serde_derive v1.0.228 [INFO] [stderr] Adding shlex v1.3.0 [INFO] [stderr] Adding simba v0.6.0 [INFO] [stderr] Adding simba v0.9.1 [INFO] [stderr] Adding smallvec v1.15.1 [INFO] [stderr] Adding stable_deref_trait v1.2.1 [INFO] [stderr] Adding statrs v0.16.1 (available: v0.18.0) [INFO] [stderr] Adding statrs v0.18.0 [INFO] [stderr] Adding strum v0.26.3 [INFO] [stderr] Adding strum_macros v0.26.4 [INFO] [stderr] Adding syn v0.15.44 [INFO] [stderr] Adding syn v1.0.109 [INFO] [stderr] Adding syn v2.0.109 [INFO] [stderr] Adding synstructure v0.13.2 [INFO] [stderr] Adding thiserror v1.0.69 [INFO] [stderr] Adding thiserror v2.0.17 [INFO] [stderr] Adding thiserror-impl v1.0.69 [INFO] [stderr] Adding thiserror-impl v2.0.17 [INFO] [stderr] Adding tinystr v0.8.2 [INFO] [stderr] Adding triple_accel v0.4.0 [INFO] [stderr] Adding typenum v1.19.0 [INFO] [stderr] Adding unicode-ident v1.0.22 [INFO] [stderr] Adding unicode-xid v0.1.0 [INFO] [stderr] Adding url v2.5.7 [INFO] [stderr] Adding utf8_iter v1.0.4 [INFO] [stderr] Adding vcpkg v0.2.15 [INFO] [stderr] Adding vec_map v0.8.2 [INFO] [stderr] Adding wasi v0.11.1+wasi-snapshot-preview1 [INFO] [stderr] Adding wasip2 v1.0.1+wasi-0.2.4 [INFO] [stderr] Adding wide v0.7.33 [INFO] [stderr] Adding windows-link v0.2.1 [INFO] [stderr] Adding windows-sys v0.59.0 [INFO] [stderr] Adding windows-targets v0.52.6 [INFO] [stderr] Adding windows_aarch64_gnullvm v0.52.6 [INFO] [stderr] Adding windows_aarch64_msvc v0.52.6 [INFO] [stderr] Adding windows_i686_gnu v0.52.6 [INFO] [stderr] Adding windows_i686_gnullvm v0.52.6 [INFO] [stderr] Adding windows_i686_msvc v0.52.6 [INFO] [stderr] Adding windows_x86_64_gnu v0.52.6 [INFO] [stderr] Adding windows_x86_64_gnullvm v0.52.6 [INFO] [stderr] Adding windows_x86_64_msvc v0.52.6 [INFO] [stderr] Adding wit-bindgen v0.46.0 [INFO] [stderr] Adding writeable v0.6.2 [INFO] [stderr] Adding yoke v0.8.1 [INFO] [stderr] Adding yoke-derive v0.8.1 [INFO] [stderr] Adding zerocopy v0.8.27 [INFO] [stderr] Adding zerocopy-derive v0.8.27 [INFO] [stderr] Adding zerofrom v0.1.6 [INFO] [stderr] Adding zerofrom-derive v0.1.6 [INFO] [stderr] Adding zerotrie v0.2.3 [INFO] [stderr] Adding zerovec v0.11.5 [INFO] [stderr] Adding zerovec-derive v0.11.2 [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded logaddexp v0.1.3 [INFO] [stderr] Downloaded csv-core v0.1.13 [INFO] [stderr] Downloaded rust-htslib v0.51.0 [INFO] [stderr] Downloaded statrs v0.16.1 [INFO] [stderr] Downloaded curl-sys v0.4.84+curl-8.17.0 [INFO] [stderr] Downloaded openssl-src v300.5.4+3.5.4 [INFO] [stderr] Downloaded bio v3.0.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+90b65889799733f21ebdf59d96411aa531c5900a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 3556a4a64b8a0cd752373a258380aa0e5d245567f69bb5a2e834e12f71798d81 [INFO] running `Command { std: "docker" "start" "-a" "3556a4a64b8a0cd752373a258380aa0e5d245567f69bb5a2e834e12f71798d81", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "3556a4a64b8a0cd752373a258380aa0e5d245567f69bb5a2e834e12f71798d81", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3556a4a64b8a0cd752373a258380aa0e5d245567f69bb5a2e834e12f71798d81", kill_on_drop: false }` [INFO] [stdout] 3556a4a64b8a0cd752373a258380aa0e5d245567f69bb5a2e834e12f71798d81 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+90b65889799733f21ebdf59d96411aa531c5900a" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] c96464ada4d54e3b073a8d849bf87aeac8ed01e42148aa044d268908ed15615e [INFO] running `Command { std: "docker" "start" "-a" "c96464ada4d54e3b073a8d849bf87aeac8ed01e42148aa044d268908ed15615e", kill_on_drop: false }` [INFO] [stderr] Compiling unicode-ident v1.0.22 [INFO] [stderr] Compiling quote v1.0.42 [INFO] [stderr] Checking stable_deref_trait v1.2.1 [INFO] [stderr] Compiling serde_core v1.0.228 [INFO] [stderr] Checking bytemuck v1.24.0 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Compiling clang-sys v1.8.1 [INFO] [stderr] Checking writeable v0.6.2 [INFO] [stderr] Checking litemap v0.8.1 [INFO] [stderr] Compiling libc v0.2.177 [INFO] [stderr] Checking getrandom v0.2.16 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Compiling icu_normalizer_data v2.1.1 [INFO] [stderr] Compiling icu_properties_data v2.1.1 [INFO] [stderr] Compiling regex-syntax v0.8.8 [INFO] [stderr] Compiling libloading v0.8.9 [INFO] [stderr] Compiling proc-macro2 v1.0.103 [INFO] [stderr] Compiling nom v7.1.3 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Checking rand_core v0.6.4 [INFO] [stderr] Compiling either v1.15.0 [INFO] [stderr] Checking safe_arch v0.7.4 [INFO] [stderr] Compiling bindgen v0.69.5 [INFO] [stderr] Checking aho-corasick v1.1.4 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling itertools v0.12.1 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Compiling bitflags v2.10.0 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling syn v0.15.44 [INFO] [stderr] Checking wide v0.7.33 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking num-rational v0.4.2 [INFO] [stderr] Checking hashbrown v0.15.5 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Checking csv-core v0.1.13 [INFO] [stderr] Compiling libm v0.1.4 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking fixedbitset v0.5.7 [INFO] [stderr] Compiling jobserver v0.1.34 [INFO] [stderr] Compiling syn v2.0.109 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Checking bit-vec v0.8.0 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Compiling proc-macro-error-attr2 v2.0.0 [INFO] [stderr] Compiling cc v1.2.45 [INFO] [stderr] Checking bit-set v0.8.0 [INFO] [stderr] Checking ndarray v0.16.1 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Checking ordered-float v5.1.0 [INFO] [stderr] Checking petgraph v0.8.3 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking triple_accel v0.4.0 [INFO] [stderr] Checking linear-map v1.2.0 [INFO] [stderr] Compiling regex-automata v0.4.13 [INFO] [stderr] Checking editdistancek v1.0.2 [INFO] [stderr] Checking strum v0.26.3 [INFO] [stderr] Checking bytecount v0.6.9 [INFO] [stderr] Checking ieee754 v0.2.6 [INFO] [stderr] Checking simba v0.9.1 [INFO] [stderr] Checking simba v0.6.0 [INFO] [stderr] Checking petgraph v0.6.5 [INFO] [stderr] error: could not compile `regex-syntax` (lib) [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/90b65889799733f21ebdf59d96411aa531c5900a/bin/rustc --crate-name regex_syntax --edition=2021 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/regex-syntax-0.8.8/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata -C embed-bitcode=no -C debuginfo=2 --allow=unexpected_cfgs --check-cfg 'cfg(docsrs_regex)' --cfg 'feature="default"' --cfg 'feature="std"' --cfg 'feature="unicode"' --cfg 'feature="unicode-age"' --cfg 'feature="unicode-bool"' --cfg 'feature="unicode-case"' --cfg 'feature="unicode-gencat"' --cfg 'feature="unicode-perl"' --cfg 'feature="unicode-script"' --cfg 'feature="unicode-segment"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("arbitrary", "default", "std", "unicode", "unicode-age", "unicode-bool", "unicode-case", "unicode-gencat", "unicode-perl", "unicode-script", "unicode-segment"))' -C metadata=913a5d51337a2c9b -C extra-filename=-02f2daf0cc200caa --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --cap-lints allow --cap-lints=forbid` (signal: 9, SIGKILL: kill) [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] running `Command { std: "docker" "inspect" "c96464ada4d54e3b073a8d849bf87aeac8ed01e42148aa044d268908ed15615e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c96464ada4d54e3b073a8d849bf87aeac8ed01e42148aa044d268908ed15615e", kill_on_drop: false }` [INFO] [stdout] c96464ada4d54e3b073a8d849bf87aeac8ed01e42148aa044d268908ed15615e