[INFO] fetching crate deepbiop-core 0.1.16... [INFO] checking deepbiop-core-0.1.16 against try#f27166d4c64dc29edc5ea3214357f191edf8b635 for pr-148329 [INFO] extracting crate deepbiop-core 0.1.16 into /workspace/builds/worker-7-tc2/source [INFO] started tweaking crates.io crate deepbiop-core 0.1.16 [INFO] finished tweaking crates.io crate deepbiop-core 0.1.16 [INFO] tweaked toml for crates.io crate deepbiop-core 0.1.16 written to /workspace/builds/worker-7-tc2/source/Cargo.toml [INFO] validating manifest of crates.io crate deepbiop-core 0.1.16 on toolchain f27166d4c64dc29edc5ea3214357f191edf8b635 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+f27166d4c64dc29edc5ea3214357f191edf8b635" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate deepbiop-core 0.1.16 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+f27166d4c64dc29edc5ea3214357f191edf8b635" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+f27166d4c64dc29edc5ea3214357f191edf8b635" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 2428fec7c13b86ba97527d4d571fb2faaa579ba0e8da7f6d2012892df6206a4e [INFO] running `Command { std: "docker" "start" "-a" "2428fec7c13b86ba97527d4d571fb2faaa579ba0e8da7f6d2012892df6206a4e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "2428fec7c13b86ba97527d4d571fb2faaa579ba0e8da7f6d2012892df6206a4e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2428fec7c13b86ba97527d4d571fb2faaa579ba0e8da7f6d2012892df6206a4e", kill_on_drop: false }` [INFO] [stdout] 2428fec7c13b86ba97527d4d571fb2faaa579ba0e8da7f6d2012892df6206a4e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+f27166d4c64dc29edc5ea3214357f191edf8b635" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 5f3de6380c08436dbfdb835f83d2c2d38767b94d5e3355bd0dc0b0b93ba36d1d [INFO] running `Command { std: "docker" "start" "-a" "5f3de6380c08436dbfdb835f83d2c2d38767b94d5e3355bd0dc0b0b93ba36d1d", kill_on_drop: false }` [INFO] [stderr] Compiling serde_core v1.0.228 [INFO] [stderr] Compiling target-lexicon v0.13.3 [INFO] [stderr] Checking regex-automata v0.4.13 [INFO] [stderr] Checking lexical-util v1.0.7 [INFO] [stderr] Checking arrow-schema v57.0.0 [INFO] [stderr] Compiling zerocopy-derive v0.8.27 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking chrono v0.4.42 [INFO] [stderr] Checking bytemuck v1.24.0 [INFO] [stderr] Compiling ahash v0.8.12 [INFO] [stderr] Compiling pulp v0.21.5 [INFO] [stderr] Compiling libm v0.2.15 [INFO] [stderr] Checking reborrow v0.5.5 [INFO] [stderr] Compiling dyn-stack-macros v0.1.3 [INFO] [stderr] Compiling seq-macro v0.3.6 [INFO] [stderr] Compiling itertools v0.11.0 [INFO] [stderr] Compiling phf_codegen v0.11.3 [INFO] [stderr] Checking num-complex v0.4.6 [INFO] [stderr] Compiling hashbrown v0.14.5 [INFO] [stderr] Checking dyn-stack v0.13.2 [INFO] [stderr] Checking raw-cpuid v11.6.0 [INFO] [stderr] Compiling malachite-nz v0.4.22 [INFO] [stderr] Checking lexical-parse-integer v1.0.6 [INFO] [stderr] Checking lexical-write-integer v1.0.6 [INFO] [stderr] Checking num-bigint v0.4.6 [INFO] [stderr] Checking flate2 v1.1.5 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Checking lexical-parse-float v1.0.6 [INFO] [stderr] Compiling tiny-keccak v2.0.2 [INFO] [stderr] Compiling derive_more-impl v1.0.0 [INFO] [stderr] Compiling unicode_names2_generator v1.3.0 [INFO] [stderr] Checking lexical-write-float v1.0.6 [INFO] [stderr] Compiling pyo3-build-config v0.27.1 [INFO] [stderr] Compiling crunchy v0.2.4 [INFO] [stderr] Checking getrandom v0.2.16 [INFO] [stderr] Compiling unic-common v0.9.0 [INFO] [stderr] Compiling unic-char-range v0.9.0 [INFO] [stderr] Compiling darling_core v0.20.11 [INFO] [stderr] Checking lexical-core v1.0.6 [INFO] [stderr] Checking rand_core v0.6.4 [INFO] [stderr] Compiling unic-char-property v0.9.0 [INFO] [stderr] Compiling unic-ucd-version v0.9.0 [INFO] [stderr] Compiling rustpython-parser-vendored v0.4.0 [INFO] [stderr] Checking noodles-bgzf v0.43.0 [INFO] [stderr] Compiling flatbuffers v25.9.23 [INFO] [stderr] Compiling unicode_names2 v1.3.0 [INFO] [stderr] Compiling is-macro v0.3.7 [INFO] [stderr] Checking zerocopy v0.8.27 [INFO] [stderr] Checking atoi v2.0.0 [INFO] [stderr] Compiling rustpython-parser v0.4.0 [INFO] [stderr] Checking safe_arch v0.7.4 [INFO] [stderr] Compiling phf v0.11.3 [INFO] [stderr] Checking num-rational v0.4.2 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling bzip2-sys v0.1.13+1.0.8 [INFO] [stderr] Checking csv-core v0.1.13 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Checking wide v0.7.33 [INFO] [stderr] Checking serde v1.0.228 [INFO] [stderr] Compiling malachite-base v0.4.22 [INFO] [stderr] Checking serde_json v1.0.145 [INFO] [stderr] Compiling rustpython-parser-core v0.4.0 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Checking csv v1.4.0 [INFO] [stderr] Checking zerofrom v0.1.6 [INFO] [stderr] Compiling num_enum_derive v0.7.5 [INFO] [stderr] Compiling pyo3-ffi v0.27.1 [INFO] [stderr] Compiling pyo3-macros-backend v0.27.1 [INFO] [stderr] Checking bstr v1.12.1 [INFO] [stderr] Checking regex v1.12.2 [INFO] [stderr] Compiling pyo3 v0.27.1 [INFO] [stderr] Checking ndarray v0.16.1 [INFO] [stderr] Compiling numpy v0.27.0 [INFO] [stderr] Compiling unic-emoji-char v0.9.0 [INFO] [stderr] Compiling unic-ucd-ident v0.9.0 [INFO] [stderr] Compiling yoke-derive v0.7.5 [INFO] [stderr] Checking num-iter v0.1.45 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Compiling zip v1.1.4 [INFO] [stderr] Compiling lalrpop-util v0.20.2 [INFO] [stderr] Checking noodles-core v0.18.0 [INFO] [stderr] Checking simdutf8 v0.1.5 [INFO] [stderr] Checking ppv-lite86 v0.2.21 [INFO] [stderr] Checking noodles-csi v0.51.0 [INFO] [stderr] Compiling indoc v2.0.7 [INFO] [stderr] Checking unindent v0.2.4 [INFO] [stderr] Compiling snap v1.1.1 [INFO] [stderr] Checking simba v0.9.1 [INFO] [stderr] Compiling derive_more v1.0.0 [INFO] [stderr] Checking num v0.4.3 [INFO] [stderr] Checking safetensors v0.4.5 [INFO] [stderr] Checking num_enum v0.7.5 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking toml_datetime v0.7.3 [INFO] [stderr] Checking serde_spanned v1.0.3 [INFO] [stderr] Checking rand_chacha v0.9.0 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Checking noodles-sam v0.79.0 [INFO] [stderr] Checking memmap2 v0.9.9 [INFO] [stderr] Checking ordered-float v2.10.1 [INFO] [stderr] Checking ordered-float v5.1.0 [INFO] [stderr] Compiling thiserror-impl v2.0.17 [INFO] [stderr] Compiling proc-macro-error-attr2 v2.0.0 [INFO] [stderr] Checking rand v0.9.2 [INFO] [stderr] Checking integer-encoding v3.0.4 [INFO] [stderr] Checking bytecount v0.6.9 [INFO] [stderr] Checking twox-hash v2.1.2 [INFO] [stderr] Checking thrift v0.17.0 [INFO] [stderr] Checking toml v0.9.8 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Checking lz4_flex v0.11.5 [INFO] [stderr] Compiling proc-macro-error2 v2.0.1 [INFO] [stderr] Checking yoke v0.7.5 [INFO] [stderr] Checking hashbrown v0.15.5 [INFO] [stderr] Checking xz2 v0.1.7 [INFO] [stderr] Checking brotli v8.0.2 [INFO] [stderr] Checking rand_distr v0.5.1 [INFO] [stderr] Compiling syn v0.15.44 [INFO] [stderr] Checking bzip2 v0.4.4 [INFO] [stderr] Checking noodles-fasta v0.56.0 [INFO] [stderr] Checking noodles-fastq v0.21.0 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Checking buffer-redux v1.0.2 [INFO] [stderr] Compiling darling_macro v0.20.11 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Checking fixedbitset v0.5.7 [INFO] [stderr] Checking noodles-bam v0.83.0 [INFO] [stderr] Checking enum-map v2.7.3 [INFO] [stderr] Checking petgraph v0.8.3 [INFO] [stderr] Checking half v2.7.1 [INFO] [stderr] Checking bv v0.11.1 [INFO] [stderr] Checking needletail v0.5.1 [INFO] [stderr] Compiling darling v0.20.11 [INFO] [stderr] Checking thiserror v2.0.17 [INFO] [stderr] Compiling getset v0.1.6 [INFO] [stderr] Compiling derive_builder_core v0.20.2 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking multimap v0.10.1 [INFO] [stderr] Checking lexical v7.0.5 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking arrow-buffer v57.0.0 [INFO] [stderr] Checking gemm-common v0.18.2 [INFO] [stderr] Checking float8 v0.4.2 [INFO] [stderr] Checking noodles v0.101.0 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking triple_accel v0.4.0 [INFO] [stderr] Checking editdistancek v1.0.2 [INFO] [stderr] Checking strum v0.26.3 [INFO] [stderr] Checking tempfile v3.23.0 [INFO] [stderr] Checking gemm-f32 v0.18.2 [INFO] [stderr] Checking gemm-c32 v0.18.2 [INFO] [stderr] Checking gemm-f64 v0.18.2 [INFO] [stderr] Checking gemm-c64 v0.18.2 [INFO] [stderr] Checking bio-types v1.0.4 [INFO] [stderr] Compiling derive_builder_macro v0.20.2 [INFO] [stderr] Compiling derefable v0.1.0 [INFO] [stderr] Compiling pyo3-macros v0.27.1 [INFO] [stderr] Checking arrow-data v57.0.0 [INFO] [stderr] Checking derive_builder v0.20.2 [INFO] [stderr] Checking gemm-f16 v0.18.2 [INFO] [stderr] Checking gemm v0.18.2 [INFO] [stderr] Checking ug v0.5.0 [INFO] [stderr] Checking arrow-array v57.0.0 [INFO] [stderr] Checking nalgebra v0.33.2 [INFO] [stderr] Checking candle-core v0.9.2-alpha.1 [INFO] [stderr] Checking arrow-select v57.0.0 [INFO] [stderr] Checking arrow-row v57.0.0 [INFO] [stderr] Checking arrow-arith v57.0.0 [INFO] [stderr] Checking arrow-cast v57.0.0 [INFO] [stderr] Checking arrow-ipc v57.0.0 [INFO] [stderr] Checking arrow-ord v57.0.0 [INFO] [stderr] Checking arrow-string v57.0.0 [INFO] [stderr] Checking arrow-csv v57.0.0 [INFO] [stderr] Checking arrow-json v57.0.0 [INFO] [stderr] Checking parquet v57.0.0 [INFO] [stderr] Checking arrow v57.0.0 [INFO] [stderr] Compiling malachite-q v0.4.22 [INFO] [stderr] Compiling malachite v0.4.22 [INFO] [stderr] Compiling malachite-bigint v0.2.3 [INFO] [stderr] Checking statrs v0.18.0 [INFO] [stderr] Checking bio v3.0.0 [INFO] [stderr] Compiling rustpython-ast v0.4.0 [INFO] [stderr] Compiling pyo3-stub-gen-derive v0.17.0 [INFO] [stderr] Checking pyo3-stub-gen v0.17.0 [INFO] [stderr] Checking deepbiop-core v0.1.16 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 00s [INFO] running `Command { std: "docker" "inspect" "5f3de6380c08436dbfdb835f83d2c2d38767b94d5e3355bd0dc0b0b93ba36d1d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5f3de6380c08436dbfdb835f83d2c2d38767b94d5e3355bd0dc0b0b93ba36d1d", kill_on_drop: false }` [INFO] [stdout] 5f3de6380c08436dbfdb835f83d2c2d38767b94d5e3355bd0dc0b0b93ba36d1d